RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 MTMR4Q9NYA4 1195 aa16.28■□□□□ 0.2
SHKBP1-218ENST00000598907 CD207Q9UJ71 328 aa16.28■□□□□ 0.2
SHKBP1-218ENST00000598907 MTMR7Q9Y216 660 aa16.28■□□□□ 0.2
SHKBP1-218ENST00000598907 PTPRZ1P23471 2315 aaPredicted RBP16.28■□□□□ 0.2
SHKBP1-218ENST00000598907 MYO7AQ13402 2215 aa16.27■□□□□ 0.2
SHKBP1-218ENST00000598907 RALGAPA2Q2PPJ7 1873 aa16.27■□□□□ 0.2
SHKBP1-218ENST00000598907 M0R2C6 588 aa16.27■□□□□ 0.2
SHKBP1-218ENST00000598907 NFIBO00712 420 aa16.27■□□□□ 0.2
SHKBP1-218ENST00000598907 NKRFO15226 690 aaKnown RBP eCLIP16.27■□□□□ 0.2
SHKBP1-218ENST00000598907 TXNP10599 105 aaKnown RBP16.27■□□□□ 0.2
SHKBP1-218ENST00000598907 MCCP23508 829 aa16.27■□□□□ 0.2
SHKBP1-218ENST00000598907 CALML3P27482 149 aa16.27■□□□□ 0.2
SHKBP1-218ENST00000598907 AVPR2P30518 371 aa16.27■□□□□ 0.2
SHKBP1-218ENST00000598907 RBL2Q08999 1139 aa16.27■□□□□ 0.2
SHKBP1-218ENST00000598907 CTC1Q2NKJ3 1217 aa16.27■□□□□ 0.2
SHKBP1-218ENST00000598907 SCFD2Q8WU76 684 aa16.27■□□□□ 0.2
SHKBP1-218ENST00000598907 AFG1LQ8WV93 481 aa16.27■□□□□ 0.2
SHKBP1-218ENST00000598907 STAG1Q8WVM7 1258 aa16.27■□□□□ 0.2
SHKBP1-218ENST00000598907 WNT8BQ93098 351 aa16.27■□□□□ 0.2
SHKBP1-218ENST00000598907 MKL1Q969V6 931 aa16.27■□□□□ 0.2
SHKBP1-218ENST00000598907 BACH2Q9BYV9 841 aa16.27■□□□□ 0.2
SHKBP1-218ENST00000598907 TRPC6Q9Y210 931 aa16.27■□□□□ 0.2
SHKBP1-218ENST00000598907 NCK2O43639 380 aa16.26■□□□□ 0.19
SHKBP1-218ENST00000598907 NDUFV1P49821 464 aa16.26■□□□□ 0.19
SHKBP1-218ENST00000598907 TRAF7Q6Q0C0 670 aa16.26■□□□□ 0.19
SHKBP1-218ENST00000598907 CHST3Q7LGC8 479 aa16.26■□□□□ 0.19
SHKBP1-218ENST00000598907 ZNF589Q86UQ0 364 aaPredicted RBP16.26■□□□□ 0.19
SHKBP1-218ENST00000598907 ZNF444Q8N0Y2 327 aaPredicted RBP16.26■□□□□ 0.19
SHKBP1-218ENST00000598907 DBF4BQ8NFT6 615 aa16.26■□□□□ 0.19
SHKBP1-218ENST00000598907 STRBPQ96SI9 672 aaKnown RBP16.26■□□□□ 0.19
SHKBP1-218ENST00000598907 ALG1Q9BT22 464 aa16.26■□□□□ 0.19
SHKBP1-218ENST00000598907 HDAC6Q9UBN7 1215 aa16.26■□□□□ 0.19
SHKBP1-218ENST00000598907 GTF2IRD1Q9UHL9 959 aa16.26■□□□□ 0.19
SHKBP1-218ENST00000598907 PRR12Q9ULL5 1215 aa16.26■□□□□ 0.19
SHKBP1-218ENST00000598907 GRM6O15303 877 aa16.25■□□□□ 0.19
SHKBP1-218ENST00000598907 ARIH2O95376 493 aa16.25■□□□□ 0.19
SHKBP1-218ENST00000598907 MMP3P08254 477 aa16.25■□□□□ 0.19
SHKBP1-218ENST00000598907 SIGLEC14Q08ET2 396 aa16.25■□□□□ 0.19
SHKBP1-218ENST00000598907 SESTD1Q86VW0 696 aa16.25■□□□□ 0.19
SHKBP1-218ENST00000598907 C7orf31Q8N865 590 aa16.25■□□□□ 0.19
SHKBP1-218ENST00000598907 INCENPQ9NQS7 918 aa16.25■□□□□ 0.19
SHKBP1-218ENST00000598907 CCDC171Q6TFL3 1326 aa16.24■□□□□ 0.19
SHKBP1-218ENST00000598907 DCHS1Q96JQ0 3298 aa16.24■□□□□ 0.19
SHKBP1-218ENST00000598907 GPAA1O43292 621 aa16.24■□□□□ 0.19
SHKBP1-218ENST00000598907 KRT37O76014 449 aa16.24■□□□□ 0.19
SHKBP1-218ENST00000598907 SEC24BO95487 1268 aa16.24■□□□□ 0.19
SHKBP1-218ENST00000598907 PDGFBP01127 241 aaPredicted RBP16.24■□□□□ 0.19
SHKBP1-218ENST00000598907 KAT2BQ92831 832 aa16.24■□□□□ 0.19
SHKBP1-218ENST00000598907 GMCL1Q96IK5 515 aa16.24■□□□□ 0.19
SHKBP1-218ENST00000598907 SYNPO2Q9UMS6 1093 aa16.24■□□□□ 0.19
SHKBP1-218ENST00000598907 PROB1E7EW31 1015 aa16.23■□□□□ 0.19
SHKBP1-218ENST00000598907 FOXP2O15409 715 aa16.23■□□□□ 0.19
SHKBP1-218ENST00000598907 ICAM1P05362 532 aa16.23■□□□□ 0.19
SHKBP1-218ENST00000598907 TSPY3P0CV98 308 aa16.23■□□□□ 0.19
SHKBP1-218ENST00000598907 TSPY8P0CW00 308 aa16.23■□□□□ 0.19
SHKBP1-218ENST00000598907 MFAP1P55081 439 aaKnown RBP16.23■□□□□ 0.19
SHKBP1-218ENST00000598907 ZNF200P98182 395 aaPredicted RBP16.23■□□□□ 0.19
SHKBP1-218ENST00000598907 PTK7Q13308 1070 aa16.23■□□□□ 0.19
SHKBP1-218ENST00000598907 TRIM71Q2Q1W2 868 aaKnown RBP16.23■□□□□ 0.19
SHKBP1-218ENST00000598907 SBK1Q52WX2 424 aa16.23■□□□□ 0.19
SHKBP1-218ENST00000598907 ASIC4Q96FT7 647 aa16.23■□□□□ 0.19
SHKBP1-218ENST00000598907 RPGRIP1Q96KN7 1286 aa16.23■□□□□ 0.19
SHKBP1-218ENST00000598907 IFIH1Q9BYX4 1025 aaKnown RBP16.23■□□□□ 0.19
SHKBP1-218ENST00000598907 LSG1Q9H089 658 aaKnown RBP16.23■□□□□ 0.19
SHKBP1-218ENST00000598907 EMSYQ7Z589 1322 aa16.22■□□□□ 0.19
SHKBP1-218ENST00000598907 MED19A0JLT2 244 aaPredicted RBP16.22■□□□□ 0.19
SHKBP1-218ENST00000598907 LOC730098B7Z3J9 87 aa16.22■□□□□ 0.19
SHKBP1-218ENST00000598907 EPB41L2O43491 1005 aaKnown RBP16.22■□□□□ 0.19
SHKBP1-218ENST00000598907 EIF5BO60841 1220 aaKnown RBP16.22■□□□□ 0.19
SHKBP1-218ENST00000598907 ZNF286BP0CG31 522 aa16.22■□□□□ 0.19
SHKBP1-218ENST00000598907 TDO2P48775 406 aa16.22■□□□□ 0.19
SHKBP1-218ENST00000598907 PSEN2P49810 448 aa16.22■□□□□ 0.19
SHKBP1-218ENST00000598907 CCDC96Q2M329 555 aa16.22■□□□□ 0.19
SHKBP1-218ENST00000598907 MPHOSPH6Q99547 160 aaKnown RBP16.22■□□□□ 0.19
SHKBP1-218ENST00000598907 C11orf84Q9BUA3 381 aaPredicted RBP16.22■□□□□ 0.19
SHKBP1-218ENST00000598907 RIF1Q5UIP0 2472 aaKnown RBP16.22■□□□□ 0.19
SHKBP1-218ENST00000598907 CACNA1BQ00975 2339 aa16.22■□□□□ 0.19
SHKBP1-218ENST00000598907 FAM186AA6NE01 2351 aa16.21■□□□□ 0.19
SHKBP1-218ENST00000598907 GSG1L2A8MUP6 293 aa16.21■□□□□ 0.19
SHKBP1-218ENST00000598907 GALR2O43603 387 aaPredicted RBP16.21■□□□□ 0.19
SHKBP1-218ENST00000598907 HSPD1P10809 573 aaKnown RBP16.21■□□□□ 0.19
SHKBP1-218ENST00000598907 GNAT2P19087 354 aa16.21■□□□□ 0.19
SHKBP1-218ENST00000598907 THPOP40225 353 aa16.21■□□□□ 0.19
SHKBP1-218ENST00000598907 PTH1RQ03431 593 aa16.21■□□□□ 0.19
SHKBP1-218ENST00000598907 VPS53Q5VIR6 699 aa16.21■□□□□ 0.19
SHKBP1-218ENST00000598907 RNF207Q6ZRF8 634 aa16.21■□□□□ 0.19
SHKBP1-218ENST00000598907 FIBCD1Q8N539 461 aa16.21■□□□□ 0.19
SHKBP1-218ENST00000598907 MAP4K1Q92918 833 aa16.21■□□□□ 0.19
SHKBP1-218ENST00000598907 DSCC1Q9BVC3 393 aa16.21■□□□□ 0.19
SHKBP1-218ENST00000598907 EPB41L4AQ9HCS5 686 aaPredicted RBP16.21■□□□□ 0.19
SHKBP1-218ENST00000598907 PLIN4Q96Q06 1357 aa16.21■□□□□ 0.19
SHKBP1-218ENST00000598907 DMDP11532 3685 aa16.2■□□□□ 0.18
SHKBP1-218ENST00000598907 LOC102724159A0A0B4J2E5 919 aa16.2■□□□□ 0.18
SHKBP1-218ENST00000598907 RSPH10B2B2RC85 870 aa16.2■□□□□ 0.18
SHKBP1-218ENST00000598907 PATL2C9JE40 543 aaKnown RBP16.2■□□□□ 0.18
SHKBP1-218ENST00000598907 REC8O95072 547 aa16.2■□□□□ 0.18
SHKBP1-218ENST00000598907 GH1P01241 217 aa16.2■□□□□ 0.18
SHKBP1-218ENST00000598907 RSPH10BP0C881 870 aa16.2■□□□□ 0.18
SHKBP1-218ENST00000598907 CASTP20810 708 aaKnown RBP16.2■□□□□ 0.18
SHKBP1-218ENST00000598907 SLC16A2P36021 539 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 93.8 ms