RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 HOXD8P13378 290 aaPredicted RBP11.87□□□□□ -0.51
TRIM28-210ENST00000597618 IRS1P35568 1242 aa11.87□□□□□ -0.51
TRIM28-210ENST00000597618 THPOP40225 353 aa11.87□□□□□ -0.51
TRIM28-210ENST00000597618 SMAD2Q15796 467 aaKnown RBP11.87□□□□□ -0.51
TRIM28-210ENST00000597618 PLEKHG4Q58EX7 1191 aa11.87□□□□□ -0.51
TRIM28-210ENST00000597618 HERC4Q5GLZ8 1057 aaPredicted RBP11.87□□□□□ -0.51
TRIM28-210ENST00000597618 RRP12Q5JTH9 1297 aaKnown RBP11.87□□□□□ -0.51
TRIM28-210ENST00000597618 GPATCH4Q5T3I0 446 aaKnown RBP11.87□□□□□ -0.51
TRIM28-210ENST00000597618 RPAINQ86UA6 219 aa11.87□□□□□ -0.51
TRIM28-210ENST00000597618 SERINC5Q86VE9 423 aa11.87□□□□□ -0.51
TRIM28-210ENST00000597618 MCF2L2Q86YR7 1114 aa11.87□□□□□ -0.51
TRIM28-210ENST00000597618 PI4K2BQ8TCG2 481 aa11.87□□□□□ -0.51
TRIM28-210ENST00000597618 SEPT8Q92599 483 aa11.87□□□□□ -0.51
TRIM28-210ENST00000597618 RMDN3Q96TC7 470 aa11.87□□□□□ -0.51
TRIM28-210ENST00000597618 DCTPP1Q9H773 170 aa11.87□□□□□ -0.51
TRIM28-210ENST00000597618 MUTYHQ9UIF7 546 aa11.87□□□□□ -0.51
TRIM28-210ENST00000597618 MRVI1Q9Y6F6 885 aa11.87□□□□□ -0.51
TRIM28-210ENST00000597618 EIF3JO75822 258 aaKnown RBP11.86□□□□□ -0.51
TRIM28-210ENST00000597618 PTPN5P54829 565 aa11.86□□□□□ -0.51
TRIM28-210ENST00000597618 ZNF200P98182 395 aaPredicted RBP11.86□□□□□ -0.51
TRIM28-210ENST00000597618 ALX1Q15699 326 aa11.86□□□□□ -0.51
TRIM28-210ENST00000597618 CDC37Q16543 378 aaPredicted RBP11.86□□□□□ -0.51
TRIM28-210ENST00000597618 ARHGEF16Q5VV41 709 aa11.86□□□□□ -0.51
TRIM28-210ENST00000597618 TOP1MTQ969P6 601 aa11.86□□□□□ -0.51
TRIM28-210ENST00000597618 TTC14Q96N46 770 aa11.86□□□□□ -0.51
TRIM28-210ENST00000597618 TAAR1Q96RJ0 339 aa11.86□□□□□ -0.51
TRIM28-210ENST00000597618 PRRX2Q99811 253 aa11.86□□□□□ -0.51
TRIM28-210ENST00000597618 COL20A1Q9P218 1284 aa11.86□□□□□ -0.51
TRIM28-210ENST00000597618 MICAL3Q7RTP6 2002 aa11.86□□□□□ -0.51
TRIM28-210ENST00000597618 ST18O60284 1047 aa11.85□□□□□ -0.51
TRIM28-210ENST00000597618 CAND2O75155 1236 aa11.85□□□□□ -0.51
TRIM28-210ENST00000597618 PPFIA4O75335 1185 aa11.85□□□□□ -0.51
TRIM28-210ENST00000597618 EIF2AK2P19525 551 aaKnown RBP11.85□□□□□ -0.51
TRIM28-210ENST00000597618 LTBRP36941 435 aa11.85□□□□□ -0.51
TRIM28-210ENST00000597618 SMAD4Q13485 552 aaKnown RBP11.85□□□□□ -0.51
TRIM28-210ENST00000597618 PKN1Q16512 942 aa11.85□□□□□ -0.51
TRIM28-210ENST00000597618 CTC1Q2NKJ3 1217 aa11.85□□□□□ -0.51
TRIM28-210ENST00000597618 VPS53Q5VIR6 699 aa11.85□□□□□ -0.51
TRIM28-210ENST00000597618 RNF135Q8IUD6 432 aa11.85□□□□□ -0.51
TRIM28-210ENST00000597618 C11orf84Q9BUA3 381 aaPredicted RBP11.85□□□□□ -0.51
TRIM28-210ENST00000597618 IFIH1Q9BYX4 1025 aaKnown RBP11.85□□□□□ -0.51
TRIM28-210ENST00000597618 LMAN2LQ9H0V9 348 aa11.85□□□□□ -0.51
TRIM28-210ENST00000597618 CACNA1HO95180 2353 aa11.85□□□□□ -0.51
TRIM28-210ENST00000597618 ZDBF2Q9HCK1 2354 aa11.84□□□□□ -0.51
TRIM28-210ENST00000597618 C17orf102A2RUQ5 167 aa11.84□□□□□ -0.51
TRIM28-210ENST00000597618 C5orf67F2Z3F1 127 aa11.84□□□□□ -0.51
TRIM28-210ENST00000597618 MBTPS2O43462 519 aa11.84□□□□□ -0.51
TRIM28-210ENST00000597618 UPP2O95045 317 aa11.84□□□□□ -0.51
TRIM28-210ENST00000597618 RB1P06400 928 aa11.84□□□□□ -0.51
TRIM28-210ENST00000597618 NR3C2P08235 984 aa11.84□□□□□ -0.51
TRIM28-210ENST00000597618 GOLGA8HP0CJ92 632 aa11.84□□□□□ -0.51
TRIM28-210ENST00000597618 PCP11498 1178 aaKnown RBP11.84□□□□□ -0.51
TRIM28-210ENST00000597618 CTNNB1P35222 781 aa11.84□□□□□ -0.51
TRIM28-210ENST00000597618 HIC1Q14526 733 aa11.84□□□□□ -0.51
TRIM28-210ENST00000597618 CLUL1Q15846 466 aa11.84□□□□□ -0.51
TRIM28-210ENST00000597618 KCNV1Q6PIU1 500 aa11.84□□□□□ -0.51
TRIM28-210ENST00000597618 BMP8AQ7Z5Y6 402 aa11.84□□□□□ -0.51
TRIM28-210ENST00000597618 MIER1Q8N108 512 aa11.84□□□□□ -0.51
TRIM28-210ENST00000597618 PRSS33Q8NF86 280 aa11.84□□□□□ -0.51
TRIM28-210ENST00000597618 TBC1D5Q92609 795 aa11.84□□□□□ -0.51
TRIM28-210ENST00000597618 ANKS1AQ92625 1134 aa11.84□□□□□ -0.51
TRIM28-210ENST00000597618 EDAQ92838 391 aa11.84□□□□□ -0.51
TRIM28-210ENST00000597618 APBB2Q92870 758 aa11.84□□□□□ -0.51
TRIM28-210ENST00000597618 ATP6V0A1Q93050 837 aa11.84□□□□□ -0.51
TRIM28-210ENST00000597618 SPATA33Q96N06 139 aa11.84□□□□□ -0.51
TRIM28-210ENST00000597618 PXMP2Q9NR77 195 aa11.84□□□□□ -0.51
TRIM28-210ENST00000597618 MRPL11Q9Y3B7 192 aaKnown RBP11.84□□□□□ -0.51
TRIM28-210ENST00000597618 RWDD3Q9Y3V2 267 aa11.84□□□□□ -0.51
TRIM28-210ENST00000597618 ZFHX2Q9C0A1 2572 aaPredicted RBP11.84□□□□□ -0.51
TRIM28-210ENST00000597618 ZMYM6O95789 1325 aa11.84□□□□□ -0.51
TRIM28-210ENST00000597618 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.83□□□□□ -0.52
TRIM28-210ENST00000597618 HSPD1P10809 573 aaKnown RBP11.83□□□□□ -0.52
TRIM28-210ENST00000597618 MX1P20591 662 aa11.83□□□□□ -0.52
TRIM28-210ENST00000597618 HOXC8P31273 242 aa11.83□□□□□ -0.52
TRIM28-210ENST00000597618 HYAL1Q12794 435 aa11.83□□□□□ -0.52
TRIM28-210ENST00000597618 CELF3Q5SZQ8 465 aaKnown RBP11.83□□□□□ -0.52
TRIM28-210ENST00000597618 MYSM1Q5VVJ2 828 aa11.83□□□□□ -0.52
TRIM28-210ENST00000597618 FIBCD1Q8N539 461 aa11.83□□□□□ -0.52
TRIM28-210ENST00000597618 IL17RAQ96F46 866 aa11.83□□□□□ -0.52
TRIM28-210ENST00000597618 PHOX2BQ99453 314 aa11.83□□□□□ -0.52
TRIM28-210ENST00000597618 UBA5Q9GZZ9 404 aa11.83□□□□□ -0.52
TRIM28-210ENST00000597618 HELLSQ9NRZ9 838 aa11.83□□□□□ -0.52
TRIM28-210ENST00000597618 TECTAO75443 2155 aa11.83□□□□□ -0.52
TRIM28-210ENST00000597618 MYO7AQ13402 2215 aa11.83□□□□□ -0.52
TRIM28-210ENST00000597618 TMEM221A6NGB7 291 aa11.82□□□□□ -0.52
TRIM28-210ENST00000597618 RBAK-RBAKDNI3L0D1 243 aa11.82□□□□□ -0.52
TRIM28-210ENST00000597618 M0R296 226 aa11.82□□□□□ -0.52
TRIM28-210ENST00000597618 STXBP3O00186 592 aa11.82□□□□□ -0.52
TRIM28-210ENST00000597618 GGPS1O95749 300 aa11.82□□□□□ -0.52
TRIM28-210ENST00000597618 FGAP02671 866 aa11.82□□□□□ -0.52
TRIM28-210ENST00000597618 CTSHP09668 335 aa11.82□□□□□ -0.52
TRIM28-210ENST00000597618 DLX2Q07687 328 aaPredicted RBP11.82□□□□□ -0.52
TRIM28-210ENST00000597618 HSDL1Q3SXM5 330 aa11.82□□□□□ -0.52
TRIM28-210ENST00000597618 MFSD6Q6ZSS7 791 aa11.82□□□□□ -0.52
TRIM28-210ENST00000597618 TRIM67Q6ZTA4 783 aa11.82□□□□□ -0.52
TRIM28-210ENST00000597618 SUGP1Q8IWZ8 645 aaKnown RBP11.82□□□□□ -0.52
TRIM28-210ENST00000597618 ADGRF4Q8IZF3 695 aa11.82□□□□□ -0.52
TRIM28-210ENST00000597618 PBXIP1Q96AQ6 731 aa11.82□□□□□ -0.52
TRIM28-210ENST00000597618 C16orf70Q9BSU1 422 aa11.82□□□□□ -0.52
TRIM28-210ENST00000597618 CPVLQ9H3G5 476 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms