RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 RASSF8Q8NHQ8 419 aa17.19■□□□□ 0.34
TRIM28-209ENST00000597423 CYP2W1Q8TAV3 490 aa17.19■□□□□ 0.34
TRIM28-209ENST00000597423 ETNPPLQ8TBG4 499 aa17.19■□□□□ 0.34
TRIM28-209ENST00000597423 SYMPKQ92797 1274 aaKnown RBP17.19■□□□□ 0.34
TRIM28-209ENST00000597423 LENG9Q96B70 501 aa17.19■□□□□ 0.34
TRIM28-209ENST00000597423 TIGD1Q96MW7 591 aa17.19■□□□□ 0.34
TRIM28-209ENST00000597423 RIT2Q99578 217 aa17.19■□□□□ 0.34
TRIM28-209ENST00000597423 SDF4Q9BRK5 362 aa17.19■□□□□ 0.34
TRIM28-209ENST00000597423 CCSER1Q9C0I3 900 aa17.19■□□□□ 0.34
TRIM28-209ENST00000597423 TBC1D22BQ9NU19 505 aa17.19■□□□□ 0.34
TRIM28-209ENST00000597423 HPSEQ9Y251 543 aa17.19■□□□□ 0.34
TRIM28-209ENST00000597423 DIS3Q9Y2L1 958 aaKnown RBP17.19■□□□□ 0.34
TRIM28-209ENST00000597423 SOWAHBA6NEL2 793 aa17.18■□□□□ 0.34
TRIM28-209ENST00000597423 IPO5O00410 1097 aaKnown RBP17.18■□□□□ 0.34
TRIM28-209ENST00000597423 GAS7O60861 476 aa17.18■□□□□ 0.34
TRIM28-209ENST00000597423 AOC2O75106 756 aa17.18■□□□□ 0.34
TRIM28-209ENST00000597423 NR1I2O75469 434 aa17.18■□□□□ 0.34
TRIM28-209ENST00000597423 ZNF202O95125 648 aa17.18■□□□□ 0.34
TRIM28-209ENST00000597423 ITGB5P18084 799 aa17.18■□□□□ 0.34
TRIM28-209ENST00000597423 ADORA2AP29274 412 aa17.18■□□□□ 0.34
TRIM28-209ENST00000597423 GRIN1Q05586 938 aa17.18■□□□□ 0.34
TRIM28-209ENST00000597423 SPECC1Q5M775 1068 aa17.18■□□□□ 0.34
TRIM28-209ENST00000597423 LRCH2Q5VUJ6 765 aa17.18■□□□□ 0.34
TRIM28-209ENST00000597423 KCNV1Q6PIU1 500 aa17.18■□□□□ 0.34
TRIM28-209ENST00000597423 ZNF467Q7Z7K2 595 aaPredicted RBP17.18■□□□□ 0.34
TRIM28-209ENST00000597423 IGSF22Q8N9C0 903 aa17.18■□□□□ 0.34
TRIM28-209ENST00000597423 IQUBQ8NA54 791 aa17.18■□□□□ 0.34
TRIM28-209ENST00000597423 ENGASEQ8NFI3 743 aa17.18■□□□□ 0.34
TRIM28-209ENST00000597423 SLC5A5Q92911 643 aa17.18■□□□□ 0.34
TRIM28-209ENST00000597423 CALML4Q96GE6 196 aa17.18■□□□□ 0.34
TRIM28-209ENST00000597423 PURBQ96QR8 312 aaKnown RBP17.18■□□□□ 0.34
TRIM28-209ENST00000597423 KCNH7Q9NS40 1196 aa17.18■□□□□ 0.34
TRIM28-209ENST00000597423 COL11A1P12107 1806 aaPredicted RBP17.17■□□□□ 0.34
TRIM28-209ENST00000597423 PGK2P07205 417 aa17.17■□□□□ 0.34
TRIM28-209ENST00000597423 SNW1Q13573 536 aaKnown RBP17.17■□□□□ 0.34
TRIM28-209ENST00000597423 GRB14Q14449 540 aa17.17■□□□□ 0.34
TRIM28-209ENST00000597423 CABP7Q86V35 215 aa17.17■□□□□ 0.34
TRIM28-209ENST00000597423 IL31RAQ8NI17 732 aa17.17■□□□□ 0.34
TRIM28-209ENST00000597423 EPSTI1Q96J88 318 aa17.17■□□□□ 0.34
TRIM28-209ENST00000597423 ZIC5Q96T25 663 aa17.17■□□□□ 0.34
TRIM28-209ENST00000597423 TEKT3Q9BXF9 490 aa17.17■□□□□ 0.34
TRIM28-209ENST00000597423 NUP62CLQ9H1M0 184 aa17.17■□□□□ 0.34
TRIM28-209ENST00000597423 GOLPH3LQ9H4A5 285 aa17.17■□□□□ 0.34
TRIM28-209ENST00000597423 AGO4Q9HCK5 861 aaKnown RBP17.17■□□□□ 0.34
TRIM28-209ENST00000597423 POLR2DO15514 142 aaKnown RBP17.16■□□□□ 0.34
TRIM28-209ENST00000597423 ARP10275 920 aa17.16■□□□□ 0.34
TRIM28-209ENST00000597423 TGFB3P10600 412 aa17.16■□□□□ 0.34
TRIM28-209ENST00000597423 EDNRBP24530 442 aa17.16■□□□□ 0.34
TRIM28-209ENST00000597423 VEGFBP49765 207 aa17.16■□□□□ 0.34
TRIM28-209ENST00000597423 KIF22Q14807 665 aa17.16■□□□□ 0.34
TRIM28-209ENST00000597423 ZNF792Q3KQV3 632 aa17.16■□□□□ 0.34
TRIM28-209ENST00000597423 RRAGBQ5VZM2 374 aa17.16■□□□□ 0.34
TRIM28-209ENST00000597423 HAUS3Q68CZ6 603 aa17.16■□□□□ 0.34
TRIM28-209ENST00000597423 ELOA2Q8IYF1 753 aaPredicted RBP17.16■□□□□ 0.34
TRIM28-209ENST00000597423 CEP57L1Q8IYX8 460 aa17.16■□□□□ 0.34
TRIM28-209ENST00000597423 MSL3Q8N5Y2 521 aaKnown RBP17.16■□□□□ 0.34
TRIM28-209ENST00000597423 KCTD17Q8N5Z5 321 aa17.16■□□□□ 0.34
TRIM28-209ENST00000597423 GIMAP8Q8ND71 665 aaPredicted RBP17.16■□□□□ 0.34
TRIM28-209ENST00000597423 CNNM3Q8NE01 707 aa17.16■□□□□ 0.34
TRIM28-209ENST00000597423 CDK5RAP3Q96JB5 506 aa17.16■□□□□ 0.34
TRIM28-209ENST00000597423 INPP4AQ96PE3 977 aaPredicted RBP17.16■□□□□ 0.34
TRIM28-209ENST00000597423 TNMDQ9H2S6 317 aa17.16■□□□□ 0.34
TRIM28-209ENST00000597423 CLSTN2Q9H4D0 955 aa17.16■□□□□ 0.34
TRIM28-209ENST00000597423 SMCHD1A6NHR9 2005 aa17.16■□□□□ 0.34
TRIM28-209ENST00000597423 SPATA31C2B4DYI2 1134 aa17.15■□□□□ 0.34
TRIM28-209ENST00000597423 ICAM3P32942 547 aa17.15■□□□□ 0.34
TRIM28-209ENST00000597423 FCGRTP55899 365 aa17.15■□□□□ 0.34
TRIM28-209ENST00000597423 OTOP1Q7RTM1 612 aa17.15■□□□□ 0.34
TRIM28-209ENST00000597423 MORC4Q8TE76 937 aa17.15■□□□□ 0.34
TRIM28-209ENST00000597423 SOCS4Q8WXH5 440 aa17.15■□□□□ 0.34
TRIM28-209ENST00000597423 NUDT12Q9BQG2 462 aa17.15■□□□□ 0.34
TRIM28-209ENST00000597423 CFHR5Q9BXR6 569 aa17.15■□□□□ 0.34
TRIM28-209ENST00000597423 PANK2Q9BZ23 570 aa17.15■□□□□ 0.34
TRIM28-209ENST00000597423 NT5C3AQ9H0P0 336 aa17.15■□□□□ 0.34
TRIM28-209ENST00000597423 CUEDC2Q9H467 287 aa17.15■□□□□ 0.34
TRIM28-209ENST00000597423 TNPO2O14787 897 aaKnown RBP17.14■□□□□ 0.33
TRIM28-209ENST00000597423 PSMD10O75832 226 aa17.14■□□□□ 0.33
TRIM28-209ENST00000597423 PPP2R5CQ13362 524 aa17.14■□□□□ 0.33
TRIM28-209ENST00000597423 ZFP91Q96JP5 570 aaPredicted RBP17.14■□□□□ 0.33
TRIM28-209ENST00000597423 R3HDMLQ9H3Y0 253 aa17.14■□□□□ 0.33
TRIM28-209ENST00000597423 KDM3AQ9Y4C1 1321 aa17.14■□□□□ 0.33
TRIM28-209ENST00000597423 COBLO75128 1261 aa17.13■□□□□ 0.33
TRIM28-209ENST00000597423 SLFN14P0C7P3 912 aa17.13■□□□□ 0.33
TRIM28-209ENST00000597423 RGS2P41220 211 aa17.13■□□□□ 0.33
TRIM28-209ENST00000597423 STAT6P42226 847 aa17.13■□□□□ 0.33
TRIM28-209ENST00000597423 KRT76Q01546 638 aa17.13■□□□□ 0.33
TRIM28-209ENST00000597423 MAP2K5Q13163 448 aa17.13■□□□□ 0.33
TRIM28-209ENST00000597423 ARHGEF6Q15052 776 aa17.13■□□□□ 0.33
TRIM28-209ENST00000597423 ZRSR1Q15695 479 aaKnown RBP17.13■□□□□ 0.33
TRIM28-209ENST00000597423 MORN1Q5T089 497 aa17.13■□□□□ 0.33
TRIM28-209ENST00000597423 NCAPH2Q6IBW4 605 aa17.13■□□□□ 0.33
TRIM28-209ENST00000597423 KRBA2Q6ZNG9 492 aa17.13■□□□□ 0.33
TRIM28-209ENST00000597423 SEPT14Q6ZU15 432 aa17.13■□□□□ 0.33
TRIM28-209ENST00000597423 USP49Q70CQ1 688 aa17.13■□□□□ 0.33
TRIM28-209ENST00000597423 PDILTQ8N807 584 aa17.13■□□□□ 0.33
TRIM28-209ENST00000597423 SNX29Q8TEQ0 813 aa17.13■□□□□ 0.33
TRIM28-209ENST00000597423 DHX58Q96C10 678 aa17.13■□□□□ 0.33
TRIM28-209ENST00000597423 SENP7Q9BQF6 1050 aa17.13■□□□□ 0.33
TRIM28-209ENST00000597423 LRRC27Q9C0I9 530 aa17.13■□□□□ 0.33
TRIM28-209ENST00000597423 GZF1Q9H116 711 aaPredicted RBP17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms