RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 TBC1D32Q96NH3 1257 aa17.18■□□□□ 0.34
UPF1-202ENST00000594243 SEZ6LQ9BYH1 1024 aa17.18■□□□□ 0.34
UPF1-202ENST00000594243 ANO3Q9BYT9 981 aa17.18■□□□□ 0.34
UPF1-202ENST00000594243 TMEM260Q9NX78 707 aa17.18■□□□□ 0.34
UPF1-202ENST00000594243 CTDNEP1O95476 244 aa17.17■□□□□ 0.34
UPF1-202ENST00000594243 RTP1P59025 263 aa17.17■□□□□ 0.34
UPF1-202ENST00000594243 ARHGAP1Q07960 439 aa17.17■□□□□ 0.34
UPF1-202ENST00000594243 NEDD9Q14511 834 aa17.17■□□□□ 0.34
UPF1-202ENST00000594243 CELF3Q5SZQ8 465 aaKnown RBP17.17■□□□□ 0.34
UPF1-202ENST00000594243 MYSM1Q5VVJ2 828 aa17.17■□□□□ 0.34
UPF1-202ENST00000594243 CXCL17Q6UXB2 119 aa17.17■□□□□ 0.34
UPF1-202ENST00000594243 GIMAP8Q8ND71 665 aaPredicted RBP17.17■□□□□ 0.34
UPF1-202ENST00000594243 GPRASP2Q96D09 838 aa17.17■□□□□ 0.34
UPF1-202ENST00000594243 PGBD1Q96JS3 809 aa17.17■□□□□ 0.34
UPF1-202ENST00000594243 MLXIPQ9HAP2 919 aa17.17■□□□□ 0.34
UPF1-202ENST00000594243 SH2B1Q9NRF2 756 aaPredicted RBP17.17■□□□□ 0.34
UPF1-202ENST00000594243 ORC3Q9UBD5 711 aaPredicted RBP17.17■□□□□ 0.34
UPF1-202ENST00000594243 ATP11BQ9Y2G3 1177 aa17.17■□□□□ 0.34
UPF1-202ENST00000594243 UBIAD1Q9Y5Z9 338 aa17.17■□□□□ 0.34
UPF1-202ENST00000594243 CEP290O15078 2479 aa17.16■□□□□ 0.34
UPF1-202ENST00000594243 KIAA1217Q5T5P2 1943 aa17.16■□□□□ 0.34
UPF1-202ENST00000594243 A0A0U1RQG5 324 aaPredicted RBP17.16■□□□□ 0.34
UPF1-202ENST00000594243 GGPS1O95749 300 aa17.16■□□□□ 0.34
UPF1-202ENST00000594243 MYL3P08590 195 aa17.16■□□□□ 0.34
UPF1-202ENST00000594243 ZNF76P36508 570 aa17.16■□□□□ 0.34
UPF1-202ENST00000594243 SREBF1P36956 1147 aa17.16■□□□□ 0.34
UPF1-202ENST00000594243 PURAQ00577 322 aaKnown RBP17.16■□□□□ 0.34
UPF1-202ENST00000594243 SP2Q02086 613 aa17.16■□□□□ 0.34
UPF1-202ENST00000594243 AFG1LQ8WV93 481 aa17.16■□□□□ 0.34
UPF1-202ENST00000594243 SENP7Q9BQF6 1050 aa17.16■□□□□ 0.34
UPF1-202ENST00000594243 MXRA8Q9BRK3 442 aa17.16■□□□□ 0.34
UPF1-202ENST00000594243 MTG1Q9BT17 334 aaPredicted RBP17.16■□□□□ 0.34
UPF1-202ENST00000594243 JADE2Q9NQC1 790 aa17.16■□□□□ 0.34
UPF1-202ENST00000594243 PCDHA4Q9UN74 947 aa17.16■□□□□ 0.34
UPF1-202ENST00000594243 MROH7Q68CQ1 1323 aa17.16■□□□□ 0.34
UPF1-202ENST00000594243 ARVCFO00192 962 aa17.15■□□□□ 0.34
UPF1-202ENST00000594243 MMP3P08254 477 aa17.15■□□□□ 0.34
UPF1-202ENST00000594243 ITGB5P18084 799 aa17.15■□□□□ 0.34
UPF1-202ENST00000594243 UBA1P22314 1058 aaKnown RBP17.15■□□□□ 0.34
UPF1-202ENST00000594243 ARHGAP4P98171 946 aa17.15■□□□□ 0.34
UPF1-202ENST00000594243 MTMR1Q13613 665 aa17.15■□□□□ 0.34
UPF1-202ENST00000594243 DGKDQ16760 1214 aa17.15■□□□□ 0.34
UPF1-202ENST00000594243 TRIM60Q495X7 471 aa17.15■□□□□ 0.34
UPF1-202ENST00000594243 BLIDQ8IZY5 108 aa17.15■□□□□ 0.34
UPF1-202ENST00000594243 NSUN7Q8NE18 718 aaKnown RBP17.15■□□□□ 0.34
UPF1-202ENST00000594243 PPTC7Q8NI37 304 aa17.15■□□□□ 0.34
UPF1-202ENST00000594243 SPATA33Q96N06 139 aa17.15■□□□□ 0.34
UPF1-202ENST00000594243 TOX2Q96NM4 488 aa17.15■□□□□ 0.34
UPF1-202ENST00000594243 AIFM3Q96NN9 605 aa17.15■□□□□ 0.34
UPF1-202ENST00000594243 LLPHQ9BRT6 129 aaKnown RBP17.15■□□□□ 0.34
UPF1-202ENST00000594243 PRKAG2Q9UGJ0 569 aa17.15■□□□□ 0.34
UPF1-202ENST00000594243 DCDC2CA8MYV0 355 aa17.14■□□□□ 0.33
UPF1-202ENST00000594243 H0YGN5 161 aa17.14■□□□□ 0.33
UPF1-202ENST00000594243 PPFIA4O75335 1185 aa17.14■□□□□ 0.33
UPF1-202ENST00000594243 CYP3A4P08684 503 aa17.14■□□□□ 0.33
UPF1-202ENST00000594243 CDK7P50613 346 aa17.14■□□□□ 0.33
UPF1-202ENST00000594243 ITGA7Q13683 1181 aa17.14■□□□□ 0.33
UPF1-202ENST00000594243 CEP55Q53EZ4 464 aa17.14■□□□□ 0.33
UPF1-202ENST00000594243 ANKRD33Q7Z3H0 272 aa17.14■□□□□ 0.33
UPF1-202ENST00000594243 DAGLBQ8NCG7 672 aa17.14■□□□□ 0.33
UPF1-202ENST00000594243 ALG1Q9BT22 464 aa17.14■□□□□ 0.33
UPF1-202ENST00000594243 PHF20Q9BVI0 1012 aa17.14■□□□□ 0.33
UPF1-202ENST00000594243 FDPSP14324 419 aaKnown RBP17.13■□□□□ 0.33
UPF1-202ENST00000594243 MCM2P49736 904 aa17.13■□□□□ 0.33
UPF1-202ENST00000594243 TLE2Q04725 743 aa17.13■□□□□ 0.33
UPF1-202ENST00000594243 SEMA3FQ13275 785 aa17.13■□□□□ 0.33
UPF1-202ENST00000594243 HSDL1Q3SXM5 330 aa17.13■□□□□ 0.33
UPF1-202ENST00000594243 METTL7BQ6UX53 244 aa17.13■□□□□ 0.33
UPF1-202ENST00000594243 CYFIP1Q7L576 1253 aa17.13■□□□□ 0.33
UPF1-202ENST00000594243 NIPA1Q7RTP0 329 aa17.13■□□□□ 0.33
UPF1-202ENST00000594243 CCDC83Q8IWF9 413 aa17.13■□□□□ 0.33
UPF1-202ENST00000594243 SLC43A3Q8NBI5 491 aa17.13■□□□□ 0.33
UPF1-202ENST00000594243 CRYGNQ8WXF5 182 aa17.13■□□□□ 0.33
UPF1-202ENST00000594243 MEIS1O00470 390 aa17.12■□□□□ 0.33
UPF1-202ENST00000594243 NOP56O00567 594 aaKnown RBP17.12■□□□□ 0.33
UPF1-202ENST00000594243 ADAMTS3O15072 1205 aa17.12■□□□□ 0.33
UPF1-202ENST00000594243 TLR3O15455 904 aaKnown RBP17.12■□□□□ 0.33
UPF1-202ENST00000594243 PQBP1O60828 265 aaKnown RBP17.12■□□□□ 0.33
UPF1-202ENST00000594243 USP11P51784 963 aa17.12■□□□□ 0.33
UPF1-202ENST00000594243 RASGRP4Q8TDF6 673 aa17.12■□□□□ 0.33
UPF1-202ENST00000594243 KCNH7Q9NS40 1196 aa17.12■□□□□ 0.33
UPF1-202ENST00000594243 KCNJ14Q9UNX9 436 aa17.12■□□□□ 0.33
UPF1-202ENST00000594243 M0R2N6 131 aa17.11■□□□□ 0.33
UPF1-202ENST00000594243 SORBS3O60504 671 aa17.11■□□□□ 0.33
UPF1-202ENST00000594243 DTNBO60941 627 aa17.11■□□□□ 0.33
UPF1-202ENST00000594243 ATP9AO75110 1047 aa17.11■□□□□ 0.33
UPF1-202ENST00000594243 CLTBP09497 229 aa17.11■□□□□ 0.33
UPF1-202ENST00000594243 SYN1P17600 705 aa17.11■□□□□ 0.33
UPF1-202ENST00000594243 PSMC6P62333 389 aa17.11■□□□□ 0.33
UPF1-202ENST00000594243 HMGN5P82970 282 aaKnown RBP17.11■□□□□ 0.33
UPF1-202ENST00000594243 ST3GAL1Q11201 340 aa17.11■□□□□ 0.33
UPF1-202ENST00000594243 TRIM29Q14134 588 aa17.11■□□□□ 0.33
UPF1-202ENST00000594243 CYP2W1Q8TAV3 490 aa17.11■□□□□ 0.33
UPF1-202ENST00000594243 KATNAL1Q9BW62 490 aa17.11■□□□□ 0.33
UPF1-202ENST00000594243 BRMS1Q9HCU9 246 aa17.11■□□□□ 0.33
UPF1-202ENST00000594243 ZMYND8Q9ULU4 1186 aaPredicted RBP17.11■□□□□ 0.33
UPF1-202ENST00000594243 JAK2O60674 1132 aa17.1■□□□□ 0.33
UPF1-202ENST00000594243 ARP10275 920 aa17.1■□□□□ 0.33
UPF1-202ENST00000594243 HOXD8P13378 290 aaPredicted RBP17.1■□□□□ 0.33
UPF1-202ENST00000594243 KCNA2P16389 499 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms