RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 BRF1Q92994 677 aa17.55■□□□□ 0.4
TRIM28-203ENST00000593582 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.55■□□□□ 0.45e-9■■□□□ 11.8
TRIM28-203ENST00000593582 IL23AQ9NPF7 189 aa17.55■□□□□ 0.4
TRIM28-203ENST00000593582 RTEL1Q9NZ71 1219 aa17.55■□□□□ 0.4
TRIM28-203ENST00000593582 NOD1Q9Y239 953 aa17.55■□□□□ 0.4
TRIM28-203ENST00000593582 V9GY48 417 aaPredicted RBP17.55■□□□□ 0.4
TRIM28-203ENST00000593582 UMODL1Q5DID0 1318 aa17.54■□□□□ 0.4
TRIM28-203ENST00000593582 SCN10AQ9Y5Y9 1956 aa17.54■□□□□ 0.4
TRIM28-203ENST00000593582 SPATA31C2B4DYI2 1134 aa17.54■□□□□ 0.4
TRIM28-203ENST00000593582 FIBPO43427 364 aa17.54■□□□□ 0.4
TRIM28-203ENST00000593582 SORBS3O60504 671 aa17.54■□□□□ 0.4
TRIM28-203ENST00000593582 ACRP10323 421 aa17.54■□□□□ 0.4
TRIM28-203ENST00000593582 ICAM3P32942 547 aa17.54■□□□□ 0.4
TRIM28-203ENST00000593582 NAPAP54920 295 aa17.54■□□□□ 0.4
TRIM28-203ENST00000593582 APOBRQ0VD83 1088 aa17.54■□□□□ 0.4
TRIM28-203ENST00000593582 NEDD9Q14511 834 aa17.54■□□□□ 0.4
TRIM28-203ENST00000593582 TMEM240Q5SV17 173 aa17.54■□□□□ 0.4
TRIM28-203ENST00000593582 WWC2Q6AWC2 1192 aa17.54■□□□□ 0.4
TRIM28-203ENST00000593582 FAM109BQ6ICB4 259 aaPredicted RBP17.54■□□□□ 0.4
TRIM28-203ENST00000593582 C16orf59Q7L2K0 433 aa17.54■□□□□ 0.4
TRIM28-203ENST00000593582 PPP1R13LQ8WUF5 828 aa17.54■□□□□ 0.4
TRIM28-203ENST00000593582 KAT2BQ92831 832 aa17.54■□□□□ 0.4
TRIM28-203ENST00000593582 hCG_1984214I3L0E3 225 aa17.53■□□□□ 0.4
TRIM28-203ENST00000593582 NOP56O00567 594 aaKnown RBP17.53■□□□□ 0.4
TRIM28-203ENST00000593582 F2P00734 622 aa17.53■□□□□ 0.4
TRIM28-203ENST00000593582 ZNF286BP0CG31 522 aa17.53■□□□□ 0.4
TRIM28-203ENST00000593582 HOXD8P13378 290 aaPredicted RBP17.53■□□□□ 0.4
TRIM28-203ENST00000593582 CDC27P30260 824 aa17.53■□□□□ 0.4
TRIM28-203ENST00000593582 PSEN2P49810 448 aa17.53■□□□□ 0.4
TRIM28-203ENST00000593582 PTGISQ16647 500 aa17.53■□□□□ 0.4
TRIM28-203ENST00000593582 UBE2SQ16763 222 aa17.53■□□□□ 0.4
TRIM28-203ENST00000593582 HSDL1Q3SXM5 330 aa17.53■□□□□ 0.4
TRIM28-203ENST00000593582 PPP1R18Q6NYC8 613 aa17.53■□□□□ 0.4
TRIM28-203ENST00000593582 ZNF365Q70YC5 407 aa17.53■□□□□ 0.4
TRIM28-203ENST00000593582 NLRX1Q86UT6 975 aa17.53■□□□□ 0.4
TRIM28-203ENST00000593582 SESTD1Q86VW0 696 aa17.53■□□□□ 0.4
TRIM28-203ENST00000593582 TEX2Q8IWB9 1127 aa17.53■□□□□ 0.4
TRIM28-203ENST00000593582 ZNF713Q8N859 430 aaPredicted RBP17.53■□□□□ 0.4
TRIM28-203ENST00000593582 C7orf31Q8N865 590 aa17.53■□□□□ 0.4
TRIM28-203ENST00000593582 WNT8AQ9H1J5 351 aa17.53■□□□□ 0.4
TRIM28-203ENST00000593582 EHMT1Q9H9B1 1298 aa17.53■□□□□ 0.4
TRIM28-203ENST00000593582 FAM217BQ9NTX9 383 aaPredicted RBP17.53■□□□□ 0.4
TRIM28-203ENST00000593582 COL6A3P12111 3177 aa17.53■□□□□ 0.4
TRIM28-203ENST00000593582 ADD1P35611 737 aaKnown RBP17.52■□□□□ 0.4
TRIM28-203ENST00000593582 MFSD10Q14728 455 aa17.52■□□□□ 0.4
TRIM28-203ENST00000593582 ZNF697Q5TEC3 545 aa17.52■□□□□ 0.4
TRIM28-203ENST00000593582 METTL7BQ6UX53 244 aa17.52■□□□□ 0.4
TRIM28-203ENST00000593582 RPUSD2Q8IZ73 545 aaKnown RBP17.52■□□□□ 0.4
TRIM28-203ENST00000593582 CDHR1Q96JP9 859 aa17.52■□□□□ 0.4
TRIM28-203ENST00000593582 USP26Q9BXU7 913 aa17.52■□□□□ 0.4
TRIM28-203ENST00000593582 MTIF3Q9H2K0 278 aaKnown RBP17.52■□□□□ 0.4
TRIM28-203ENST00000593582 RIC8AQ9NPQ8 531 aa17.52■□□□□ 0.4
TRIM28-203ENST00000593582 PCDHA6Q9UN73 950 aa17.52■□□□□ 0.4
TRIM28-203ENST00000593582 PCDHA8Q9Y5H6 950 aa17.52■□□□□ 0.4
TRIM28-203ENST00000593582 PITPNM1O00562 1244 aa17.51■□□□□ 0.39
TRIM28-203ENST00000593582 FGBP02675 491 aa17.51■□□□□ 0.39
TRIM28-203ENST00000593582 BFSP2Q13515 415 aa17.51■□□□□ 0.39
TRIM28-203ENST00000593582 KIAA0753Q2KHM9 967 aa17.51■□□□□ 0.39
TRIM28-203ENST00000593582 RUFY3Q7L099 469 aa17.51■□□□□ 0.39
TRIM28-203ENST00000593582 CYFIP1Q7L576 1253 aa17.51■□□□□ 0.39
TRIM28-203ENST00000593582 RETREG2Q8NC44 543 aa17.51■□□□□ 0.39
TRIM28-203ENST00000593582 GIMAP8Q8ND71 665 aaPredicted RBP17.51■□□□□ 0.39
TRIM28-203ENST00000593582 SCLYQ96I15 445 aa17.51■□□□□ 0.39
TRIM28-203ENST00000593582 SENP7Q9BQF6 1050 aa17.51■□□□□ 0.39
TRIM28-203ENST00000593582 ALG1Q9BT22 464 aa17.51■□□□□ 0.39
TRIM28-203ENST00000593582 AGXT2Q9BYV1 514 aa17.51■□□□□ 0.39
TRIM28-203ENST00000593582 GLT8D2Q9H1C3 349 aa17.51■□□□□ 0.39
TRIM28-203ENST00000593582 MTMR10Q9NXD2 777 aa17.51■□□□□ 0.39
TRIM28-203ENST00000593582 BARHL2Q9NY43 387 aa17.51■□□□□ 0.39
TRIM28-203ENST00000593582 GTF2IRD1Q9UHL9 959 aa17.51■□□□□ 0.39
TRIM28-203ENST00000593582 CDH23Q9H251 3354 aa17.5■□□□□ 0.39
TRIM28-203ENST00000593582 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.5■□□□□ 0.39
TRIM28-203ENST00000593582 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.5■□□□□ 0.39
TRIM28-203ENST00000593582 SMCO2A6NFE2 343 aa17.5■□□□□ 0.39
TRIM28-203ENST00000593582 STXBP3O00186 592 aa17.5■□□□□ 0.39
TRIM28-203ENST00000593582 HAS3O00219 553 aa17.5■□□□□ 0.39
TRIM28-203ENST00000593582 ADCY7P51828 1080 aa17.5■□□□□ 0.39
TRIM28-203ENST00000593582 SEMA3FQ13275 785 aa17.5■□□□□ 0.39
TRIM28-203ENST00000593582 GDF6Q6KF10 455 aaPredicted RBP17.5■□□□□ 0.39
TRIM28-203ENST00000593582 TYW1BQ6NUM6 668 aa17.5■□□□□ 0.39
TRIM28-203ENST00000593582 CCDC155Q8N6L0 562 aa17.5■□□□□ 0.39
TRIM28-203ENST00000593582 HERVK_113Q902F9 699 aa17.5■□□□□ 0.39
TRIM28-203ENST00000593582 GPRASP2Q96D09 838 aa17.5■□□□□ 0.39
TRIM28-203ENST00000593582 BCAS3Q9H6U6 928 aa17.5■□□□□ 0.39
TRIM28-203ENST00000593582 ZSWIM6Q9HCJ5 1215 aa17.5■□□□□ 0.39
TRIM28-203ENST00000593582 HDAC6Q9UBN7 1215 aa17.5■□□□□ 0.39
TRIM28-203ENST00000593582 CYP46A1Q9Y6A2 500 aa17.5■□□□□ 0.39
TRIM28-203ENST00000593582 FOSP01100 380 aaPredicted RBP17.49■□□□□ 0.39
TRIM28-203ENST00000593582 PFKMP08237 780 aa17.49■□□□□ 0.39
TRIM28-203ENST00000593582 RFC2P35250 354 aa17.49■□□□□ 0.39
TRIM28-203ENST00000593582 PFKFB3Q16875 520 aaPredicted RBP17.49■□□□□ 0.39
TRIM28-203ENST00000593582 RASIP1Q5U651 963 aa17.49■□□□□ 0.39
TRIM28-203ENST00000593582 OTOP2Q7RTS6 562 aa17.49■□□□□ 0.39
TRIM28-203ENST00000593582 CAGE1Q8TC20 777 aa17.49■□□□□ 0.39
TRIM28-203ENST00000593582 C16orf70Q9BSU1 422 aa17.49■□□□□ 0.39
TRIM28-203ENST00000593582 NID2Q14112 1375 aa17.49■□□□□ 0.39
TRIM28-203ENST00000593582 H3BRB1 525 aa17.48■□□□□ 0.39
TRIM28-203ENST00000593582 MAFGO15525 162 aa17.48■□□□□ 0.39
TRIM28-203ENST00000593582 IQCF3P0C7M6 154 aa17.48■□□□□ 0.39
TRIM28-203ENST00000593582 SCG2P13521 617 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms