RNA–Protein interactions for RNA: ENST00000592244.1

LIG3-214, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 440 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-214ENST00000592244 PARNO95453 639 aaKnown RBP12.61□□□□□ -0.39
LIG3-214ENST00000592244 FOSP01100 380 aaPredicted RBP12.61□□□□□ -0.39
LIG3-214ENST00000592244 FGBP02675 491 aa12.61□□□□□ -0.39
LIG3-214ENST00000592244 ACTN1P12814 892 aa12.61□□□□□ -0.39
LIG3-214ENST00000592244 ICAM3P32942 547 aa12.61□□□□□ -0.39
LIG3-214ENST00000592244 NAPAP54920 295 aa12.61□□□□□ -0.39
LIG3-214ENST00000592244 CCL23P55773 120 aa12.61□□□□□ -0.39
LIG3-214ENST00000592244 PTGISQ16647 500 aa12.61□□□□□ -0.39
LIG3-214ENST00000592244 MYSM1Q5VVJ2 828 aa12.61□□□□□ -0.39
LIG3-214ENST00000592244 MCTP2Q6DN12 878 aa12.61□□□□□ -0.39
LIG3-214ENST00000592244 USP17L6PQ6QN14 398 aa12.61□□□□□ -0.39
LIG3-214ENST00000592244 IL31RAQ8NI17 732 aa12.61□□□□□ -0.39
LIG3-214ENST00000592244 CAGE1Q8TC20 777 aa12.61□□□□□ -0.39
LIG3-214ENST00000592244 CCDC12Q8WUD4 166 aaPredicted RBP12.61□□□□□ -0.39
LIG3-214ENST00000592244 TCEANC2Q96MN5 208 aa12.61□□□□□ -0.39
LIG3-214ENST00000592244 SENP7Q9BQF6 1050 aa12.61□□□□□ -0.39
LIG3-214ENST00000592244 TRMT13Q9NUP7 481 aaKnown RBP12.61□□□□□ -0.39
LIG3-214ENST00000592244 SNX14Q9Y5W7 946 aa12.61□□□□□ -0.39
LIG3-214ENST00000592244 SPATA31C2B4DYI2 1134 aa12.6□□□□□ -0.39
LIG3-214ENST00000592244 MAFGO15525 162 aa12.6□□□□□ -0.39
LIG3-214ENST00000592244 RGS20O76081 388 aa12.6□□□□□ -0.39
LIG3-214ENST00000592244 F2P00734 622 aa12.6□□□□□ -0.39
LIG3-214ENST00000592244 UBA1P22314 1058 aaKnown RBP12.6□□□□□ -0.39
LIG3-214ENST00000592244 RPS6KB1P23443 525 aa12.6□□□□□ -0.39
LIG3-214ENST00000592244 PSEN2P49810 448 aa12.6□□□□□ -0.39
LIG3-214ENST00000592244 EPHB4P54760 987 aa12.6□□□□□ -0.39
LIG3-214ENST00000592244 MFSD10Q14728 455 aa12.6□□□□□ -0.39
LIG3-214ENST00000592244 TMEM240Q5SV17 173 aa12.6□□□□□ -0.39
LIG3-214ENST00000592244 METTL7BQ6UX53 244 aa12.6□□□□□ -0.39
LIG3-214ENST00000592244 Q6ZUG5 572 aa12.6□□□□□ -0.39
LIG3-214ENST00000592244 FBXL16Q8N461 479 aa12.6□□□□□ -0.39
LIG3-214ENST00000592244 BRF1Q92994 677 aa12.6□□□□□ -0.39
LIG3-214ENST00000592244 GPRASP2Q96D09 838 aa12.6□□□□□ -0.39
LIG3-214ENST00000592244 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.6□□□□□ -0.39
LIG3-214ENST00000592244 USP26Q9BXU7 913 aa12.6□□□□□ -0.39
LIG3-214ENST00000592244 RTEL1Q9NZ71 1219 aa12.6□□□□□ -0.39
LIG3-214ENST00000592244 ZNF215Q9UL58 517 aaPredicted RBP12.6□□□□□ -0.39
LIG3-214ENST00000592244 BRPF3Q9ULD4 1205 aa12.6□□□□□ -0.39
LIG3-214ENST00000592244 V9GY48 417 aaPredicted RBP12.6□□□□□ -0.39
LIG3-214ENST00000592244 LCTP09848 1927 aa12.6□□□□□ -0.39
LIG3-214ENST00000592244 hCG_1642624A0A1W2PR95 340 aa12.59□□□□□ -0.39
LIG3-214ENST00000592244 GNAT1P11488 350 aa12.59□□□□□ -0.39
LIG3-214ENST00000592244 CYP2C9P11712 490 aa12.59□□□□□ -0.39
LIG3-214ENST00000592244 HOXD8P13378 290 aaPredicted RBP12.59□□□□□ -0.39
LIG3-214ENST00000592244 ADCY7P51828 1080 aa12.59□□□□□ -0.39
LIG3-214ENST00000592244 MRPS9P82933 396 aaKnown RBP12.59□□□□□ -0.39
LIG3-214ENST00000592244 KIAA0753Q2KHM9 967 aa12.59□□□□□ -0.39
LIG3-214ENST00000592244 ZNF365Q70YC5 407 aa12.59□□□□□ -0.39
LIG3-214ENST00000592244 HERVK_113Q902F9 699 aa12.59□□□□□ -0.39
LIG3-214ENST00000592244 RIC8AQ9NPQ8 531 aa12.59□□□□□ -0.39
LIG3-214ENST00000592244 MTMR10Q9NXD2 777 aa12.59□□□□□ -0.39
LIG3-214ENST00000592244 BARHL2Q9NY43 387 aa12.59□□□□□ -0.39
LIG3-214ENST00000592244 MSRAQ9UJ68 235 aa12.59□□□□□ -0.39
LIG3-214ENST00000592244 PCDHA6Q9UN73 950 aa12.59□□□□□ -0.39
LIG3-214ENST00000592244 STXBP5LQ9Y2K9 1186 aa12.59□□□□□ -0.39
LIG3-214ENST00000592244 PCDHA8Q9Y5H6 950 aa12.59□□□□□ -0.39
LIG3-214ENST00000592244 CYP46A1Q9Y6A2 500 aa12.59□□□□□ -0.39
LIG3-214ENST00000592244 CNTNAP5Q8WYK1 1306 aa12.59□□□□□ -0.39
LIG3-214ENST00000592244 MYH6P13533 1939 aa12.58□□□□□ -0.39
LIG3-214ENST00000592244 LTBP2Q14767 1821 aa12.58□□□□□ -0.4
LIG3-214ENST00000592244 LAMA3Q16787 3333 aa12.58□□□□□ -0.4
LIG3-214ENST00000592244 ZNF286BP0CG31 522 aa12.58□□□□□ -0.4
LIG3-214ENST00000592244 ACRP10323 421 aa12.58□□□□□ -0.4
LIG3-214ENST00000592244 APOBRQ0VD83 1088 aa12.58□□□□□ -0.4
LIG3-214ENST00000592244 AP3B2Q13367 1082 aa12.58□□□□□ -0.4
LIG3-214ENST00000592244 MTMR1Q13613 665 aa12.58□□□□□ -0.4
LIG3-214ENST00000592244 RAB30Q15771 203 aa12.58□□□□□ -0.4
LIG3-214ENST00000592244 HSDL1Q3SXM5 330 aa12.58□□□□□ -0.4
LIG3-214ENST00000592244 WWC2Q6AWC2 1192 aa12.58□□□□□ -0.4
LIG3-214ENST00000592244 CPLX2Q6PUV4 134 aaKnown RBP12.58□□□□□ -0.4
LIG3-214ENST00000592244 Q7L0L9 218 aa12.58□□□□□ -0.4
LIG3-214ENST00000592244 CYFIP1Q7L576 1253 aa12.58□□□□□ -0.4
LIG3-214ENST00000592244 AFAP1L1Q8TED9 768 aa12.58□□□□□ -0.4
LIG3-214ENST00000592244 KAT2BQ92831 832 aa12.58□□□□□ -0.4
LIG3-214ENST00000592244 GPKOWQ92917 476 aaPredicted RBP eCLIP12.58□□□□□ -0.4
LIG3-214ENST00000592244 ALG1Q9BT22 464 aa12.58□□□□□ -0.4
LIG3-214ENST00000592244 GTF2IRD1Q9UHL9 959 aa12.58□□□□□ -0.4
LIG3-214ENST00000592244 SLC4A7Q9Y6M7 1214 aa12.58□□□□□ -0.4
LIG3-214ENST00000592244 SMCO2A6NFE2 343 aa12.57□□□□□ -0.4
LIG3-214ENST00000592244 ZBBXA8MT70 800 aa12.57□□□□□ -0.4
LIG3-214ENST00000592244 H3BRB1 525 aa12.57□□□□□ -0.4
LIG3-214ENST00000592244 SORBS3O60504 671 aa12.57□□□□□ -0.4
LIG3-214ENST00000592244 IQCF3P0C7M6 154 aa12.57□□□□□ -0.4
LIG3-214ENST00000592244 SCG2P13521 617 aa12.57□□□□□ -0.4
LIG3-214ENST00000592244 GNA11P29992 359 aa12.57□□□□□ -0.4
LIG3-214ENST00000592244 SP2Q02086 613 aa12.57□□□□□ -0.4
LIG3-214ENST00000592244 PTK7Q13308 1070 aa12.57□□□□□ -0.4
LIG3-214ENST00000592244 COL9A3Q14050 684 aaPredicted RBP12.57□□□□□ -0.4
LIG3-214ENST00000592244 UBE2SQ16763 222 aa12.57□□□□□ -0.4
LIG3-214ENST00000592244 RUFY3Q7L099 469 aa12.57□□□□□ -0.4
LIG3-214ENST00000592244 TRIM22Q8IYM9 498 aa12.57□□□□□ -0.4
LIG3-214ENST00000592244 BICD2Q8TD16 824 aa12.57□□□□□ -0.4
LIG3-214ENST00000592244 TNPO1Q92973 898 aaKnown RBP12.57□□□□□ -0.4
LIG3-214ENST00000592244 TM6SF1Q9BZW5 370 aa12.57□□□□□ -0.4
LIG3-214ENST00000592244 FTOQ9C0B1 505 aaKnown RBP eCLIP12.57□□□□□ -0.4
LIG3-214ENST00000592244 WNT8AQ9H1J5 351 aa12.57□□□□□ -0.4
LIG3-214ENST00000592244 TUT1Q9H6E5 874 aaKnown RBP12.57□□□□□ -0.4
LIG3-214ENST00000592244 C6orf50Q9HD87 102 aa12.57□□□□□ -0.4
LIG3-214ENST00000592244 HDAC6Q9UBN7 1215 aa12.57□□□□□ -0.4
LIG3-214ENST00000592244 BAZ2BQ9UIF8 2168 aaKnown RBP12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms