RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 SPATA31C2B4DYI2 1134 aa13.6□□□□□ -0.23
LIG3-213ENST00000590630 ST18O60284 1047 aa13.6□□□□□ -0.23
LIG3-213ENST00000590630 CTDNEP1O95476 244 aa13.6□□□□□ -0.23
LIG3-213ENST00000590630 XBP1P17861 261 aa13.6□□□□□ -0.23
LIG3-213ENST00000590630 UBA1P22314 1058 aaKnown RBP13.6□□□□□ -0.23
LIG3-213ENST00000590630 NLRP5P59047 1200 aa13.6□□□□□ -0.23
LIG3-213ENST00000590630 CELF3Q5SZQ8 465 aaKnown RBP13.6□□□□□ -0.23
LIG3-213ENST00000590630 GALNT17Q6IS24 598 aa13.6□□□□□ -0.23
LIG3-213ENST00000590630 CXCL17Q6UXB2 119 aa13.6□□□□□ -0.23
LIG3-213ENST00000590630 DHX37Q8IY37 1157 aaKnown RBP13.6□□□□□ -0.23
LIG3-213ENST00000590630 PPTC7Q8NI37 304 aa13.6□□□□□ -0.23
LIG3-213ENST00000590630 VTI1AQ96AJ9 217 aa13.6□□□□□ -0.23
LIG3-213ENST00000590630 GPRASP2Q96D09 838 aa13.6□□□□□ -0.23
LIG3-213ENST00000590630 ZFP91Q96JP5 570 aaPredicted RBP13.6□□□□□ -0.23
LIG3-213ENST00000590630 ZSCAN31Q96LW9 406 aaPredicted RBP13.6□□□□□ -0.23
LIG3-213ENST00000590630 SEZ6LQ9BYH1 1024 aa13.6□□□□□ -0.23
LIG3-213ENST00000590630 SH2B1Q9NRF2 756 aaPredicted RBP13.6□□□□□ -0.23
LIG3-213ENST00000590630 TMEM260Q9NX78 707 aa13.6□□□□□ -0.23
LIG3-213ENST00000590630 RTEL1Q9NZ71 1219 aa13.6□□□□□ -0.23
LIG3-213ENST00000590630 ORC3Q9UBD5 711 aaPredicted RBP13.6□□□□□ -0.23
LIG3-213ENST00000590630 MROH7Q68CQ1 1323 aa13.6□□□□□ -0.23
LIG3-213ENST00000590630 A0A0U1RQG5 324 aaPredicted RBP13.59□□□□□ -0.23
LIG3-213ENST00000590630 H0YGN5 161 aa13.59□□□□□ -0.23
LIG3-213ENST00000590630 MAFGO15525 162 aa13.59□□□□□ -0.23
LIG3-213ENST00000590630 GGPS1O95749 300 aa13.59□□□□□ -0.23
LIG3-213ENST00000590630 MMP3P08254 477 aa13.59□□□□□ -0.23
LIG3-213ENST00000590630 ITGB5P18084 799 aa13.59□□□□□ -0.23
LIG3-213ENST00000590630 ARHGAP4P98171 946 aa13.59□□□□□ -0.23
LIG3-213ENST00000590630 PURAQ00577 322 aaKnown RBP13.59□□□□□ -0.23
LIG3-213ENST00000590630 SP2Q02086 613 aa13.59□□□□□ -0.23
LIG3-213ENST00000590630 SEMA3FQ13275 785 aa13.59□□□□□ -0.23
LIG3-213ENST00000590630 MTMR1Q13613 665 aa13.59□□□□□ -0.23
LIG3-213ENST00000590630 NEDD9Q14511 834 aa13.59□□□□□ -0.23
LIG3-213ENST00000590630 TRIM60Q495X7 471 aa13.59□□□□□ -0.23
LIG3-213ENST00000590630 MYSM1Q5VVJ2 828 aa13.59□□□□□ -0.23
LIG3-213ENST00000590630 JAKMIP3Q5VZ66 844 aa13.59□□□□□ -0.23
LIG3-213ENST00000590630 ANKRD33Q7Z3H0 272 aa13.59□□□□□ -0.23
LIG3-213ENST00000590630 GIMAP8Q8ND71 665 aaPredicted RBP13.59□□□□□ -0.23
LIG3-213ENST00000590630 AFG1LQ8WV93 481 aa13.59□□□□□ -0.23
LIG3-213ENST00000590630 PGBD1Q96JS3 809 aa13.59□□□□□ -0.23
LIG3-213ENST00000590630 TOX2Q96NM4 488 aa13.59□□□□□ -0.23
LIG3-213ENST00000590630 AIFM3Q96NN9 605 aa13.59□□□□□ -0.23
LIG3-213ENST00000590630 SENP7Q9BQF6 1050 aa13.59□□□□□ -0.23
LIG3-213ENST00000590630 PCDHA4Q9UN74 947 aa13.59□□□□□ -0.23
LIG3-213ENST00000590630 ATP11BQ9Y2G3 1177 aa13.59□□□□□ -0.23
LIG3-213ENST00000590630 UBIAD1Q9Y5Z9 338 aa13.59□□□□□ -0.23
LIG3-213ENST00000590630 ARVCFO00192 962 aa13.58□□□□□ -0.24
LIG3-213ENST00000590630 MYL3P08590 195 aa13.58□□□□□ -0.24
LIG3-213ENST00000590630 DGKDQ16760 1214 aa13.58□□□□□ -0.24
LIG3-213ENST00000590630 CEP55Q53EZ4 464 aa13.58□□□□□ -0.24
LIG3-213ENST00000590630 METTL7BQ6UX53 244 aa13.58□□□□□ -0.24
LIG3-213ENST00000590630 DAGLBQ8NCG7 672 aa13.58□□□□□ -0.24
LIG3-213ENST00000590630 NSUN7Q8NE18 718 aaKnown RBP13.58□□□□□ -0.24
LIG3-213ENST00000590630 CRYGNQ8WXF5 182 aa13.58□□□□□ -0.24
LIG3-213ENST00000590630 SPATA33Q96N06 139 aa13.58□□□□□ -0.24
LIG3-213ENST00000590630 LLPHQ9BRT6 129 aaKnown RBP13.58□□□□□ -0.24
LIG3-213ENST00000590630 MTG1Q9BT17 334 aaPredicted RBP13.58□□□□□ -0.24
LIG3-213ENST00000590630 MLXIPQ9HAP2 919 aa13.58□□□□□ -0.24
LIG3-213ENST00000590630 JADE2Q9NQC1 790 aa13.58□□□□□ -0.24
LIG3-213ENST00000590630 LAMA2P24043 3122 aaKnown RBP13.58□□□□□ -0.24
LIG3-213ENST00000590630 LTBP2Q14767 1821 aa13.57□□□□□ -0.24
LIG3-213ENST00000590630 DCDC2CA8MYV0 355 aa13.57□□□□□ -0.24
LIG3-213ENST00000590630 PQBP1O60828 265 aaKnown RBP13.57□□□□□ -0.24
LIG3-213ENST00000590630 PPFIA4O75335 1185 aa13.57□□□□□ -0.24
LIG3-213ENST00000590630 CYP3A4P08684 503 aa13.57□□□□□ -0.24
LIG3-213ENST00000590630 HOXD8P13378 290 aaPredicted RBP13.57□□□□□ -0.24
LIG3-213ENST00000590630 CDK7P50613 346 aa13.57□□□□□ -0.24
LIG3-213ENST00000590630 TLE2Q04725 743 aa13.57□□□□□ -0.24
LIG3-213ENST00000590630 ST3GAL1Q11201 340 aa13.57□□□□□ -0.24
LIG3-213ENST00000590630 ITGA7Q13683 1181 aa13.57□□□□□ -0.24
LIG3-213ENST00000590630 NIPA1Q7RTP0 329 aa13.57□□□□□ -0.24
LIG3-213ENST00000590630 BLIDQ8IZY5 108 aa13.57□□□□□ -0.24
LIG3-213ENST00000590630 SLC43A3Q8NBI5 491 aa13.57□□□□□ -0.24
LIG3-213ENST00000590630 MXRA8Q9BRK3 442 aa13.57□□□□□ -0.24
LIG3-213ENST00000590630 PHF20Q9BVI0 1012 aa13.57□□□□□ -0.24
LIG3-213ENST00000590630 PRKAG2Q9UGJ0 569 aa13.57□□□□□ -0.24
LIG3-213ENST00000590630 M0R2N6 131 aa13.56□□□□□ -0.24
LIG3-213ENST00000590630 MEIS1O00470 390 aa13.56□□□□□ -0.24
LIG3-213ENST00000590630 NOP56O00567 594 aaKnown RBP13.56□□□□□ -0.24
LIG3-213ENST00000590630 ADAMTS3O15072 1205 aa13.56□□□□□ -0.24
LIG3-213ENST00000590630 CLTBP09497 229 aa13.56□□□□□ -0.24
LIG3-213ENST00000590630 FDPSP14324 419 aaKnown RBP13.56□□□□□ -0.24
LIG3-213ENST00000590630 KCNA2P16389 499 aa13.56□□□□□ -0.24
LIG3-213ENST00000590630 ZNF76P36508 570 aa13.56□□□□□ -0.24
LIG3-213ENST00000590630 MCM2P49736 904 aa13.56□□□□□ -0.24
LIG3-213ENST00000590630 NPY5RQ15761 445 aa13.56□□□□□ -0.24
LIG3-213ENST00000590630 HSDL1Q3SXM5 330 aa13.56□□□□□ -0.24
LIG3-213ENST00000590630 CYFIP1Q7L576 1253 aa13.56□□□□□ -0.24
LIG3-213ENST00000590630 CCDC83Q8IWF9 413 aa13.56□□□□□ -0.24
LIG3-213ENST00000590630 RASGRP4Q8TDF6 673 aa13.56□□□□□ -0.24
LIG3-213ENST00000590630 ALG1Q9BT22 464 aa13.56□□□□□ -0.24
LIG3-213ENST00000590630 KCNH7Q9NS40 1196 aa13.56□□□□□ -0.24
LIG3-213ENST00000590630 GRIN2DO15399 1336 aa13.56□□□□□ -0.24
LIG3-213ENST00000590630 TLR3O15455 904 aaKnown RBP13.55□□□□□ -0.24
LIG3-213ENST00000590630 JAK2O60674 1132 aa13.55□□□□□ -0.24
LIG3-213ENST00000590630 USP11P51784 963 aa13.55□□□□□ -0.24
LIG3-213ENST00000590630 PSMC6P62333 389 aa13.55□□□□□ -0.24
LIG3-213ENST00000590630 SETQ01105 290 aaPredicted RBP13.55□□□□□ -0.24
LIG3-213ENST00000590630 NFRKBQ6P4R8 1299 aa13.55□□□□□ -0.24
LIG3-213ENST00000590630 FAM126BQ8IXS8 530 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms