RNA–Protein interactions for RNA: ENST00000587470.1

VMP1-205, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 995 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-205ENST00000587470 TTLL7Q6ZT98 887 aa6.66□□□□□ -1.34
VMP1-205ENST00000587470 ZC3H18Q86VM9 953 aaKnown RBP6.66□□□□□ -1.34
VMP1-205ENST00000587470 CARFQ8N187 725 aa6.66□□□□□ -1.34
VMP1-205ENST00000587470 KCTD13Q8WZ19 329 aa6.66□□□□□ -1.34
VMP1-205ENST00000587470 SGSM3Q96HU1 749 aa6.66□□□□□ -1.34
VMP1-205ENST00000587470 CHAMP1Q96JM3 812 aa6.66□□□□□ -1.34
VMP1-205ENST00000587470 SPATA25Q9BR10 227 aa6.66□□□□□ -1.34
VMP1-205ENST00000587470 NGRNQ9NPE2 291 aaKnown RBP6.66□□□□□ -1.34
VMP1-205ENST00000587470 SPATA6Q9NWH7 488 aaPredicted RBP6.66□□□□□ -1.34
VMP1-205ENST00000587470 NTMQ9P121 344 aa6.66□□□□□ -1.34
VMP1-205ENST00000587470 NPFFR2Q9Y5X5 522 aa6.66□□□□□ -1.34
VMP1-205ENST00000587470 ARAP1Q96P48 1450 aa6.66□□□□□ -1.34
VMP1-205ENST00000587470 SMARCA5O60264 1052 aaPredicted RBP6.65□□□□□ -1.34
VMP1-205ENST00000587470 LCP1P13796 627 aa6.65□□□□□ -1.34
VMP1-205ENST00000587470 MAP4K2Q12851 820 aa6.65□□□□□ -1.34
VMP1-205ENST00000587470 HSP90AA2PQ14568 343 aaPredicted RBP6.65□□□□□ -1.34
VMP1-205ENST00000587470 CHRNA2Q15822 529 aa6.65□□□□□ -1.34
VMP1-205ENST00000587470 CD300LDQ6UXZ3 194 aa6.65□□□□□ -1.34
VMP1-205ENST00000587470 GORASP1Q9BQQ3 440 aa6.65□□□□□ -1.34
VMP1-205ENST00000587470 C11orf84Q9BUA3 381 aaPredicted RBP6.65□□□□□ -1.34
VMP1-205ENST00000587470 ADAM7Q9H2U9 754 aa6.65□□□□□ -1.34
VMP1-205ENST00000587470 FBXL7Q9UJT9 491 aa6.65□□□□□ -1.34
VMP1-205ENST00000587470 RSF1Q96T23 1441 aaPredicted RBP6.65□□□□□ -1.35
VMP1-205ENST00000587470 PEG3Q9GZU2 1588 aa6.65□□□□□ -1.35
VMP1-205ENST00000587470 IQCA1LA6NCM1 817 aa6.64□□□□□ -1.35
VMP1-205ENST00000587470 HGSO14964 777 aaPredicted RBP6.64□□□□□ -1.35
VMP1-205ENST00000587470 SARSP49591 514 aaKnown RBP6.64□□□□□ -1.35
VMP1-205ENST00000587470 SMAD4Q13485 552 aaKnown RBP6.64□□□□□ -1.35
VMP1-205ENST00000587470 ZFYVE27Q5T4F4 411 aa6.64□□□□□ -1.35
VMP1-205ENST00000587470 NT5DC1Q5TFE4 455 aa6.64□□□□□ -1.35
VMP1-205ENST00000587470 FAM126BQ8IXS8 530 aa6.64□□□□□ -1.35
VMP1-205ENST00000587470 FAM26EQ8N5C1 309 aa6.64□□□□□ -1.35
VMP1-205ENST00000587470 IER2Q9BTL4 223 aa6.64□□□□□ -1.35
VMP1-205ENST00000587470 USP40Q9NVE5 1235 aa6.64□□□□□ -1.35
VMP1-205ENST00000587470 CLDND1Q9NY35 253 aa6.64□□□□□ -1.35
VMP1-205ENST00000587470 ZNF652Q9Y2D9 606 aa6.64□□□□□ -1.35
VMP1-205ENST00000587470 RAB33AQ14088 237 aa6.63□□□□□ -1.35
VMP1-205ENST00000587470 KYQ8NBH2 561 aa6.63□□□□□ -1.35
VMP1-205ENST00000587470 YIPF4Q9BSR8 244 aa6.63□□□□□ -1.35
VMP1-205ENST00000587470 GPR27Q9NS67 375 aa6.63□□□□□ -1.35
VMP1-205ENST00000587470 CEP164Q9UPV0 1460 aa6.63□□□□□ -1.35
VMP1-205ENST00000587470 NOBOXO60393 691 aa6.62□□□□□ -1.35
VMP1-205ENST00000587470 DLX3O60479 287 aa6.62□□□□□ -1.35
VMP1-205ENST00000587470 TADA3O75528 432 aa6.62□□□□□ -1.35
VMP1-205ENST00000587470 DGKIO75912 1065 aa6.62□□□□□ -1.35
VMP1-205ENST00000587470 CELA3BP08861 270 aa6.62□□□□□ -1.35
VMP1-205ENST00000587470 NKX3-2P78367 333 aa6.62□□□□□ -1.35
VMP1-205ENST00000587470 EMC4Q5J8M3 183 aa6.62□□□□□ -1.35
VMP1-205ENST00000587470 STEAP3Q658P3 488 aa6.62□□□□□ -1.35
VMP1-205ENST00000587470 TTLL6Q8N841 843 aa6.62□□□□□ -1.35
VMP1-205ENST00000587470 ST13P5Q8NFI4 369 aaPredicted RBP6.62□□□□□ -1.35
VMP1-205ENST00000587470 EPB41L1Q9H4G0 881 aa6.62□□□□□ -1.35
VMP1-205ENST00000587470 RPL13P26373 211 aaKnown RBP6.61□□□□□ -1.35
VMP1-205ENST00000587470 THBS2P35442 1172 aa6.61□□□□□ -1.35
VMP1-205ENST00000587470 GJA9P57773 515 aa6.61□□□□□ -1.35
VMP1-205ENST00000587470 ZC3H6P61129 1189 aaKnown RBP6.61□□□□□ -1.35
VMP1-205ENST00000587470 RSPO2Q6UXX9 243 aaPredicted RBP6.61□□□□□ -1.35
VMP1-205ENST00000587470 ZNF761Q86XN6 746 aaPredicted RBP6.61□□□□□ -1.35
VMP1-205ENST00000587470 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.61□□□□□ -1.35
VMP1-205ENST00000587470 SYT3Q9BQG1 590 aa6.61□□□□□ -1.35
VMP1-205ENST00000587470 AARSD1Q9BTE6 412 aaKnown RBP6.61□□□□□ -1.35
VMP1-205ENST00000587470 TRIM55Q9BYV6 548 aa6.61□□□□□ -1.35
VMP1-205ENST00000587470 PRICKLE3O43900 615 aaPredicted RBP6.6□□□□□ -1.35
VMP1-205ENST00000587470 MAFKO60675 156 aa6.6□□□□□ -1.35
VMP1-205ENST00000587470 FGFR1P11362 822 aa6.6□□□□□ -1.35
VMP1-205ENST00000587470 STAT5AP42229 794 aa6.6□□□□□ -1.35
VMP1-205ENST00000587470 ITGA1P56199 1179 aa6.6□□□□□ -1.35
VMP1-205ENST00000587470 RTP5Q14D33 572 aa6.6□□□□□ -1.35
VMP1-205ENST00000587470 CR1LQ2VPA4 569 aa6.6□□□□□ -1.35
VMP1-205ENST00000587470 UBXN11Q5T124 520 aa6.6□□□□□ -1.35
VMP1-205ENST00000587470 USP53Q70EK8 1073 aa6.6□□□□□ -1.35
VMP1-205ENST00000587470 ADAMTS17Q8TE56 1095 aa6.6□□□□□ -1.35
VMP1-205ENST00000587470 ZNF669Q96BR6 464 aaPredicted RBP6.6□□□□□ -1.35
VMP1-205ENST00000587470 TOE1Q96GM8 510 aaKnown RBP6.6□□□□□ -1.35
VMP1-205ENST00000587470 CDIP1Q9H305 208 aa6.6□□□□□ -1.35
VMP1-205ENST00000587470 PCDHB4Q9Y5E5 795 aa6.6□□□□□ -1.35
VMP1-205ENST00000587470 TCRBV5S2A0A599 114 aa6.59□□□□□ -1.35
VMP1-205ENST00000587470 KRIT1O00522 736 aa6.59□□□□□ -1.35
VMP1-205ENST00000587470 STK10O94804 968 aaKnown RBP6.59□□□□□ -1.35
VMP1-205ENST00000587470 PLP2Q04941 152 aa6.59□□□□□ -1.35
VMP1-205ENST00000587470 NAALADL2Q58DX5 795 aa6.59□□□□□ -1.35
VMP1-205ENST00000587470 STK32CQ86UX6 486 aa6.59□□□□□ -1.35
VMP1-205ENST00000587470 CKAP2LQ8IYA6 745 aa6.59□□□□□ -1.35
VMP1-205ENST00000587470 LRRC47Q8N1G4 583 aaKnown RBP6.59□□□□□ -1.35
VMP1-205ENST00000587470 ARRDC4Q8NCT1 418 aa6.59□□□□□ -1.35
VMP1-205ENST00000587470 PHOSPHO1Q8TCT1 267 aa6.59□□□□□ -1.35
VMP1-205ENST00000587470 DCAF4Q8WV16 495 aa6.59□□□□□ -1.35
VMP1-205ENST00000587470 PHF20Q9BVI0 1012 aa6.59□□□□□ -1.35
VMP1-205ENST00000587470 LNPKQ9C0E8 428 aa6.59□□□□□ -1.35
VMP1-205ENST00000587470 SMOC1Q9H4F8 434 aa6.59□□□□□ -1.35
VMP1-205ENST00000587470 ARHGEF4Q9NR80 690 aa6.59□□□□□ -1.35
VMP1-205ENST00000587470 DTLQ9NZJ0 730 aa6.59□□□□□ -1.35
VMP1-205ENST00000587470 WIZO95785 1651 aa6.58□□□□□ -1.36
VMP1-205ENST00000587470 PRODHO43272 600 aa6.58□□□□□ -1.36
VMP1-205ENST00000587470 MSCO60682 206 aa6.58□□□□□ -1.36
VMP1-205ENST00000587470 PABPC1P11940 636 aaKnown RBP6.58□□□□□ -1.36
VMP1-205ENST00000587470 KIAA2012Q0VF49 1180 aa6.58□□□□□ -1.36
VMP1-205ENST00000587470 CYP4F22Q6NT55 531 aa6.58□□□□□ -1.36
VMP1-205ENST00000587470 NSMFQ6X4W1 530 aa6.58□□□□□ -1.36
VMP1-205ENST00000587470 GGNQ86UU5 652 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms