RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 SLKQ9H2G2 1235 aaPredicted RBP12.46□□□□□ -0.41
CLIP3-203ENST00000586457 UPF2Q9HAU5 1272 aaKnown RBP12.46□□□□□ -0.41
CLIP3-203ENST00000586457 CEP290O15078 2479 aa12.45□□□□□ -0.42
CLIP3-203ENST00000586457 TRIM43BA6NCK2 446 aa12.45□□□□□ -0.42
CLIP3-203ENST00000586457 STXBP3O00186 592 aa12.45□□□□□ -0.42
CLIP3-203ENST00000586457 MMP3P08254 477 aa12.45□□□□□ -0.42
CLIP3-203ENST00000586457 XBP1P17861 261 aa12.45□□□□□ -0.42
CLIP3-203ENST00000586457 NLRP5P59047 1200 aa12.45□□□□□ -0.42
CLIP3-203ENST00000586457 PTPN11Q06124 597 aaPredicted RBP12.45□□□□□ -0.42
CLIP3-203ENST00000586457 ARHGAP1Q07960 439 aa12.45□□□□□ -0.42
CLIP3-203ENST00000586457 MTMR1Q13613 665 aa12.45□□□□□ -0.42
CLIP3-203ENST00000586457 NBPF20Q3BBV1 942 aa12.45□□□□□ -0.42
CLIP3-203ENST00000586457 MYSM1Q5VVJ2 828 aa12.45□□□□□ -0.42
CLIP3-203ENST00000586457 NFRKBQ6P4R8 1299 aa12.45□□□□□ -0.42
CLIP3-203ENST00000586457 FAM126BQ8IXS8 530 aa12.45□□□□□ -0.42
CLIP3-203ENST00000586457 RETREG2Q8NC44 543 aa12.45□□□□□ -0.42
CLIP3-203ENST00000586457 PPTC7Q8NI37 304 aa12.45□□□□□ -0.42
CLIP3-203ENST00000586457 EMID1Q96A84 441 aaPredicted RBP12.45□□□□□ -0.42
CLIP3-203ENST00000586457 TRIM43Q96BQ3 446 aaPredicted RBP12.45□□□□□ -0.42
CLIP3-203ENST00000586457 RNF26Q9BY78 433 aaPredicted RBP12.45□□□□□ -0.42
CLIP3-203ENST00000586457 AGXT2Q9BYV1 514 aa12.45□□□□□ -0.42
CLIP3-203ENST00000586457 PPP1R12CQ9BZL4 782 aa12.45□□□□□ -0.42
CLIP3-203ENST00000586457 TRPV6Q9H1D0 765 aa12.45□□□□□ -0.42
CLIP3-203ENST00000586457 NCOA5Q9HCD5 579 aaKnown RBP12.45□□□□□ -0.42
CLIP3-203ENST00000586457 FAM217BQ9NTX9 383 aaPredicted RBP12.45□□□□□ -0.42
CLIP3-203ENST00000586457 SPATA31C2B4DYI2 1134 aa12.44□□□□□ -0.42
CLIP3-203ENST00000586457 MAFGO15525 162 aa12.44□□□□□ -0.42
CLIP3-203ENST00000586457 PPFIA3O75145 1194 aa12.44□□□□□ -0.42
CLIP3-203ENST00000586457 IFNAR1P17181 557 aa12.44□□□□□ -0.42
CLIP3-203ENST00000586457 NEK4P51957 841 aa12.44□□□□□ -0.42
CLIP3-203ENST00000586457 EVCP57679 992 aa12.44□□□□□ -0.42
CLIP3-203ENST00000586457 MRPS9P82933 396 aaKnown RBP12.44□□□□□ -0.42
CLIP3-203ENST00000586457 AP3B2Q13367 1082 aa12.44□□□□□ -0.42
CLIP3-203ENST00000586457 TOB2Q14106 344 aaPredicted RBP12.44□□□□□ -0.42
CLIP3-203ENST00000586457 CYFIP1Q7L576 1253 aa12.44□□□□□ -0.42
CLIP3-203ENST00000586457 REXO1Q8N1G1 1221 aaKnown RBP12.44□□□□□ -0.42
CLIP3-203ENST00000586457 CCDC155Q8N6L0 562 aa12.44□□□□□ -0.42
CLIP3-203ENST00000586457 GPRASP2Q96D09 838 aa12.44□□□□□ -0.42
CLIP3-203ENST00000586457 INPP4AQ96PE3 977 aaPredicted RBP12.44□□□□□ -0.42
CLIP3-203ENST00000586457 ALG1Q9BT22 464 aa12.44□□□□□ -0.42
CLIP3-203ENST00000586457 ALDH8A1Q9H2A2 487 aaPredicted RBP12.44□□□□□ -0.42
CLIP3-203ENST00000586457 HIPK3Q9H422 1215 aa12.44□□□□□ -0.42
CLIP3-203ENST00000586457 TCEAL9Q9UHQ7 104 aa12.44□□□□□ -0.42
CLIP3-203ENST00000586457 LCTP09848 1927 aa12.44□□□□□ -0.42
CLIP3-203ENST00000586457 ALPK3Q96L96 1907 aa12.44□□□□□ -0.42
CLIP3-203ENST00000586457 B4GALT4O60513 344 aa12.43□□□□□ -0.42
CLIP3-203ENST00000586457 UBA1P22314 1058 aaKnown RBP12.43□□□□□ -0.42
CLIP3-203ENST00000586457 ICAM3P32942 547 aa12.43□□□□□ -0.42
CLIP3-203ENST00000586457 SP4Q02446 784 aa12.43□□□□□ -0.42
CLIP3-203ENST00000586457 FUT2Q10981 343 aa12.43□□□□□ -0.42
CLIP3-203ENST00000586457 PPIGQ13427 754 aaKnown RBP eCLIP12.43□□□□□ -0.42
CLIP3-203ENST00000586457 JAKMIP3Q5VZ66 844 aa12.43□□□□□ -0.42
CLIP3-203ENST00000586457 MFSD5Q6N075 450 aa12.43□□□□□ -0.42
CLIP3-203ENST00000586457 METTL7BQ6UX53 244 aa12.43□□□□□ -0.42
CLIP3-203ENST00000586457 RPUSD2Q8IZ73 545 aaKnown RBP12.43□□□□□ -0.42
CLIP3-203ENST00000586457 SLC43A3Q8NBI5 491 aa12.43□□□□□ -0.42
CLIP3-203ENST00000586457 SENP7Q9BQF6 1050 aa12.43□□□□□ -0.42
CLIP3-203ENST00000586457 SDF4Q9BRK5 362 aa12.43□□□□□ -0.42
CLIP3-203ENST00000586457 PKD2L1Q9P0L9 805 aa12.43□□□□□ -0.42
CLIP3-203ENST00000586457 ZNF215Q9UL58 517 aaPredicted RBP12.43□□□□□ -0.42
CLIP3-203ENST00000586457 DNAH12Q6ZR08 3092 aa12.43□□□□□ -0.42
CLIP3-203ENST00000586457 FRMPD4Q14CM0 1322 aa12.42□□□□□ -0.42
CLIP3-203ENST00000586457 RGS20O76081 388 aa12.42□□□□□ -0.42
CLIP3-203ENST00000586457 DEXIO95424 95 aa12.42□□□□□ -0.42
CLIP3-203ENST00000586457 CD4P01730 458 aa12.42□□□□□ -0.42
CLIP3-203ENST00000586457 CYP2C18P33260 490 aa12.42□□□□□ -0.42
CLIP3-203ENST00000586457 PSEN2P49810 448 aa12.42□□□□□ -0.42
CLIP3-203ENST00000586457 SP2Q02086 613 aa12.42□□□□□ -0.42
CLIP3-203ENST00000586457 BFSP2Q13515 415 aa12.42□□□□□ -0.42
CLIP3-203ENST00000586457 MFSD10Q14728 455 aa12.42□□□□□ -0.42
CLIP3-203ENST00000586457 PTGISQ16647 500 aa12.42□□□□□ -0.42
CLIP3-203ENST00000586457 KIAA0753Q2KHM9 967 aa12.42□□□□□ -0.42
CLIP3-203ENST00000586457 HSDL1Q3SXM5 330 aa12.42□□□□□ -0.42
CLIP3-203ENST00000586457 WASF1Q92558 559 aa12.42□□□□□ -0.42
CLIP3-203ENST00000586457 ANO3Q9BYT9 981 aa12.42□□□□□ -0.42
CLIP3-203ENST00000586457 ZMYND12Q9H0C1 365 aa12.42□□□□□ -0.42
CLIP3-203ENST00000586457 MTIF3Q9H2K0 278 aaKnown RBP12.42□□□□□ -0.42
CLIP3-203ENST00000586457 SH3GLB2Q9NR46 395 aa12.42□□□□□ -0.42
CLIP3-203ENST00000586457 TRMT13Q9NUP7 481 aaKnown RBP12.42□□□□□ -0.42
CLIP3-203ENST00000586457 TBX21Q9UL17 535 aa12.42□□□□□ -0.42
CLIP3-203ENST00000586457 LRRC37A2A6NM11 1700 aa12.42□□□□□ -0.42
CLIP3-203ENST00000586457 GRIN2DO15399 1336 aa12.41□□□□□ -0.42
CLIP3-203ENST00000586457 ESYT2A0FGR8 921 aa12.41□□□□□ -0.42
CLIP3-203ENST00000586457 H3BRB1 525 aa12.41□□□□□ -0.42
CLIP3-203ENST00000586457 ZNF286BP0CG31 522 aa12.41□□□□□ -0.42
CLIP3-203ENST00000586457 GNAT1P11488 350 aa12.41□□□□□ -0.42
CLIP3-203ENST00000586457 CCL23P55773 120 aa12.41□□□□□ -0.42
CLIP3-203ENST00000586457 CEP55Q53EZ4 464 aa12.41□□□□□ -0.42
CLIP3-203ENST00000586457 UTP14CQ5TAP6 766 aaKnown RBP12.41□□□□□ -0.42
CLIP3-203ENST00000586457 GLG1Q92896 1179 aa12.41□□□□□ -0.42
CLIP3-203ENST00000586457 TNPO1Q92973 898 aaKnown RBP12.41□□□□□ -0.42
CLIP3-203ENST00000586457 PGBD1Q96JS3 809 aa12.41□□□□□ -0.42
CLIP3-203ENST00000586457 RNPC3Q96LT9 517 aaKnown RBP12.41□□□□□ -0.42
CLIP3-203ENST00000586457 MXRA8Q9BRK3 442 aa12.41□□□□□ -0.42
CLIP3-203ENST00000586457 C22orf23Q9BZE7 217 aa12.41□□□□□ -0.42
CLIP3-203ENST00000586457 PRO3102Q9H379 93 aa12.41□□□□□ -0.42
CLIP3-203ENST00000586457 TUT1Q9H6E5 874 aaKnown RBP12.41□□□□□ -0.42
CLIP3-203ENST00000586457 AZI2Q9H6S1 392 aa12.41□□□□□ -0.42
CLIP3-203ENST00000586457 JADE2Q9NQC1 790 aa12.41□□□□□ -0.42
CLIP3-203ENST00000586457 TMEM260Q9NX78 707 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms