RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 PRR16Q569H4 304 aa12.56□□□□□ -0.4
LIG3-204ENST00000585740 KIAA1755Q5JYT7 1200 aa12.56□□□□□ -0.4
LIG3-204ENST00000585740 E4F1Q66K89 784 aaPredicted RBP12.56□□□□□ -0.4
LIG3-204ENST00000585740 CENPPQ6IPU0 288 aa12.56□□□□□ -0.4
LIG3-204ENST00000585740 CHADLQ6NUI6 762 aa12.56□□□□□ -0.4
LIG3-204ENST00000585740 APOBEC3FQ8IUX4 373 aaKnown RBP12.56□□□□□ -0.4
LIG3-204ENST00000585740 CCDC65Q8IXS2 484 aa12.56□□□□□ -0.4
LIG3-204ENST00000585740 MICALL2Q8IY33 904 aa12.56□□□□□ -0.4
LIG3-204ENST00000585740 CSGALNACT2Q8N6G5 542 aa12.56□□□□□ -0.4
LIG3-204ENST00000585740 TC2NQ8N9U0 490 aa12.56□□□□□ -0.4
LIG3-204ENST00000585740 DDX12PQ92771 950 aa12.56□□□□□ -0.4
LIG3-204ENST00000585740 KIFC2Q96AC6 838 aa12.56□□□□□ -0.4
LIG3-204ENST00000585740 IQCDQ96DY2 449 aa12.56□□□□□ -0.4
LIG3-204ENST00000585740 TEPSINQ96N21 525 aa12.56□□□□□ -0.4
LIG3-204ENST00000585740 TSG101Q99816 390 aa12.56□□□□□ -0.4
LIG3-204ENST00000585740 SRRTQ9BXP5 876 aaKnown RBP12.56□□□□□ -0.4
LIG3-204ENST00000585740 KIAA1683Q9H0B3 1180 aa12.56□□□□□ -0.4
LIG3-204ENST00000585740 TAB2Q9NYJ8 693 aa12.56□□□□□ -0.4
LIG3-204ENST00000585740 CNOT7Q9UIV1 285 aaKnown RBP12.56□□□□□ -0.4
LIG3-204ENST00000585740 PITPNM2Q9BZ72 1349 aa12.56□□□□□ -0.4
LIG3-204ENST00000585740 LGALS16A8MUM7 142 aa12.55□□□□□ -0.4
LIG3-204ENST00000585740 OPLAHO14841 1288 aa12.55□□□□□ -0.4
LIG3-204ENST00000585740 CFBP00751 764 aa12.55□□□□□ -0.4
LIG3-204ENST00000585740 PLA2G4BP0C869 781 aa12.55□□□□□ -0.4
LIG3-204ENST00000585740 MUTP22033 750 aa12.55□□□□□ -0.4
LIG3-204ENST00000585740 RPA1P27694 616 aa12.55□□□□□ -0.4
LIG3-204ENST00000585740 DNM2P50570 870 aa12.55□□□□□ -0.4
LIG3-204ENST00000585740 SETQ01105 290 aaPredicted RBP12.55□□□□□ -0.4
LIG3-204ENST00000585740 LRRC63Q05C16 580 aa12.55□□□□□ -0.4
LIG3-204ENST00000585740 EHHADHQ08426 723 aa12.55□□□□□ -0.4
LIG3-204ENST00000585740 STK4Q13043 487 aa12.55□□□□□ -0.4
LIG3-204ENST00000585740 KIF4BQ2VIQ3 1234 aa12.55□□□□□ -0.4
LIG3-204ENST00000585740 CCDC174Q6PII3 467 aa12.55□□□□□ -0.4
LIG3-204ENST00000585740 MCF2L2Q86YR7 1114 aa12.55□□□□□ -0.4
LIG3-204ENST00000585740 PRPF38AQ8NAV1 312 aaKnown RBP12.55□□□□□ -0.4
LIG3-204ENST00000585740 KIF18AQ8NI77 898 aa12.55□□□□□ -0.4
LIG3-204ENST00000585740 PPP1R13BQ96KQ4 1090 aa12.55□□□□□ -0.4
LIG3-204ENST00000585740 DUSP9Q99956 384 aaKnown RBP12.55□□□□□ -0.4
LIG3-204ENST00000585740 NUDT12Q9BQG2 462 aa12.55□□□□□ -0.4
LIG3-204ENST00000585740 SLF1Q9BQI6 1058 aa12.55□□□□□ -0.4
LIG3-204ENST00000585740 POLR3CQ9BUI4 534 aaPredicted RBP12.55□□□□□ -0.4
LIG3-204ENST00000585740 ZNF341Q9BYN7 854 aa12.55□□□□□ -0.4
LIG3-204ENST00000585740 VPS16Q9H269 839 aa12.55□□□□□ -0.4
LIG3-204ENST00000585740 AS3MTQ9HBK9 375 aa12.55□□□□□ -0.4
LIG3-204ENST00000585740 MAP3K20Q9NYL2 800 aaKnown RBP12.55□□□□□ -0.4
LIG3-204ENST00000585740 KIAA1024Q9UPX6 916 aa12.55□□□□□ -0.4
LIG3-204ENST00000585740 MAPK8IP1Q9UQF2 711 aa12.55□□□□□ -0.4
LIG3-204ENST00000585740 TRIM49BA6NDI0 452 aa12.54□□□□□ -0.4
LIG3-204ENST00000585740 MSH4O15457 936 aa12.54□□□□□ -0.4
LIG3-204ENST00000585740 MFAP3LO75121 409 aa12.54□□□□□ -0.4
LIG3-204ENST00000585740 ICAM1P05362 532 aa12.54□□□□□ -0.4
LIG3-204ENST00000585740 POTEIP0CG38 1075 aa12.54□□□□□ -0.4
LIG3-204ENST00000585740 POTEJP0CG39 1038 aa12.54□□□□□ -0.4
LIG3-204ENST00000585740 IDEP14735 1019 aa12.54□□□□□ -0.4
LIG3-204ENST00000585740 UBXN1Q04323 297 aa12.54□□□□□ -0.4
LIG3-204ENST00000585740 NCAPH2Q6IBW4 605 aa12.54□□□□□ -0.4
LIG3-204ENST00000585740 DYMQ7RTS9 669 aa12.54□□□□□ -0.4
LIG3-204ENST00000585740 KRT26Q7Z3Y9 468 aa12.54□□□□□ -0.4
LIG3-204ENST00000585740 LDHDQ86WU2 507 aa12.54□□□□□ -0.4
LIG3-204ENST00000585740 IRF2BP1Q8IU81 584 aa12.54□□□□□ -0.4
LIG3-204ENST00000585740 TMEM139Q8IV31 216 aa12.54□□□□□ -0.4
LIG3-204ENST00000585740 CDAN1Q8IWY9 1227 aa12.54□□□□□ -0.4
LIG3-204ENST00000585740 KIAA0895Q8NCT3 520 aa12.54□□□□□ -0.4
LIG3-204ENST00000585740 LENG9Q96B70 501 aa12.54□□□□□ -0.4
LIG3-204ENST00000585740 DNAJC19Q96DA6 116 aa12.54□□□□□ -0.4
LIG3-204ENST00000585740 NUP58Q9BVL2 599 aa12.54□□□□□ -0.4
LIG3-204ENST00000585740 PANK4Q9NVE7 773 aa12.54□□□□□ -0.4
LIG3-204ENST00000585740 TRMT1Q9NXH9 659 aaKnown RBP12.54□□□□□ -0.4
LIG3-204ENST00000585740 HACL1Q9UJ83 578 aa12.54□□□□□ -0.4
LIG3-204ENST00000585740 DNM3Q9UQ16 869 aa12.54□□□□□ -0.4
LIG3-204ENST00000585740 PPP2R3BQ9Y5P8 575 aa12.54□□□□□ -0.4
LIG3-204ENST00000585740 GJA3Q9Y6H8 435 aa12.54□□□□□ -0.4
LIG3-204ENST00000585740 USP27XA6NNY8 438 aa12.53□□□□□ -0.4
LIG3-204ENST00000585740 FAM86B1E9PN63 330 aa12.53□□□□□ -0.4
LIG3-204ENST00000585740 FAM86B2P0C5J1 330 aa12.53□□□□□ -0.4
LIG3-204ENST00000585740 FCER1AP12319 257 aa12.53□□□□□ -0.4
LIG3-204ENST00000585740 FECHP22830 423 aa12.53□□□□□ -0.4
LIG3-204ENST00000585740 HOXA13P31271 388 aaPredicted RBP12.53□□□□□ -0.4
LIG3-204ENST00000585740 MTIF2P46199 727 aaKnown RBP12.53□□□□□ -0.4
LIG3-204ENST00000585740 LBX1P52954 281 aa12.53□□□□□ -0.4
LIG3-204ENST00000585740 ADKP55263 362 aaKnown RBP12.53□□□□□ -0.4
LIG3-204ENST00000585740 GHRHRQ02643 423 aa12.53□□□□□ -0.4
LIG3-204ENST00000585740 RBL2Q08999 1139 aa12.53□□□□□ -0.4
LIG3-204ENST00000585740 SPIRE1Q08AE8 756 aa12.53□□□□□ -0.4
LIG3-204ENST00000585740 COASYQ13057 564 aa12.53□□□□□ -0.4
LIG3-204ENST00000585740 ZYXQ15942 572 aaKnown RBP12.53□□□□□ -0.4
LIG3-204ENST00000585740 ECM1Q16610 540 aa12.53□□□□□ -0.4
LIG3-204ENST00000585740 FAM26FQ5R3K3 315 aa12.53□□□□□ -0.4
LIG3-204ENST00000585740 ANKRD40Q6AI12 368 aa12.53□□□□□ -0.4
LIG3-204ENST00000585740 KCNK18Q7Z418 384 aa12.53□□□□□ -0.4
LIG3-204ENST00000585740 GPBP1Q86WP2 473 aa12.53□□□□□ -0.4
LIG3-204ENST00000585740 TMTC1Q8IUR5 882 aa12.53□□□□□ -0.4
LIG3-204ENST00000585740 MYOCDQ8IZQ8 938 aa12.53□□□□□ -0.4
LIG3-204ENST00000585740 MB21D1Q8N884 522 aa12.53□□□□□ -0.4
LIG3-204ENST00000585740 RETREG2Q8NC44 543 aa12.53□□□□□ -0.4
LIG3-204ENST00000585740 P2RX7Q99572 595 aaKnown RBP12.53□□□□□ -0.4
LIG3-204ENST00000585740 TUBGCP2Q9BSJ2 902 aa12.53□□□□□ -0.4
LIG3-204ENST00000585740 WDR18Q9BV38 432 aa12.53□□□□□ -0.4
LIG3-204ENST00000585740 WDR11Q9BZH6 1224 aa12.53□□□□□ -0.4
LIG3-204ENST00000585740 TUFT1Q9NNX1 390 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms