RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	PCDHAC2	Q9Y5I4	1007 aa		12.86	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	CTAGE9	A4FU28	777 aa		12.86	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	TSPY3	P0CV98	308 aa		12.86	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	TSPY8	P0CW00	308 aa		12.86	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	TCP10	Q12799	353 aa		12.86	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	FILIP1L	Q4L180	1135 aa		12.86	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	12.86	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	ZNF444	Q8N0Y2	327 aa	Predicted RBP	12.86	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	SCYL1	Q96KG9	808 aa		12.86	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	UIMC1	Q96RL1	719 aa		12.86	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	PSMB7	Q99436	277 aa		12.86	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	EIF6	P56537	245 aa	Known RBP	12.85	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	TTC39B	Q5VTQ0	682 aa	Predicted RBP	12.85	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	MYLK4	Q86YV6	388 aa	Predicted RBP	12.85	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	ZC3H8	Q8N5P1	291 aa	Known RBP eCLIP	12.85	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	C17orf50	Q8WW18	174 aa		12.85	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	NELFB	Q8WX92	580 aa		12.85	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	AGAP3	Q96P47	875 aa		12.85	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	RTFDC1	Q9BY42	306 aa	Predicted RBP	12.85	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	COA1	Q9GZY4	146 aa		12.85	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	ARPP21	Q9UBL0	812 aa	Predicted RBP	12.85	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	CDC23	Q9UJX2	597 aa		12.85	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	DUSP10	Q9Y6W6	482 aa		12.85	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	CYTH3	O43739	400 aa		12.85	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	ATIC	P31939	592 aa		12.85	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	ATP2C1	P98194	919 aa	Predicted RBP	12.85	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	E2F4	Q16254	413 aa		12.85	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	HPS3	Q969F9	1004 aa		12.85	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	BICDL2	A1A5D9	508 aa		12.84	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	ZNF185	O15231	689 aa		12.84	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	TPM1	P09493	284 aa		12.84	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	PRCP	P42785	496 aa		12.84	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	BEND6	Q5SZJ8	279 aa	Predicted RBP	12.84	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	TBC1D22A	Q8WUA7	517 aa		12.84	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	DHX38	Q92620	1227 aa	Known RBP	12.84	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	TRIM11	Q96F44	468 aa		12.84	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	THOC1	Q96FV9	657 aa	Known RBP	12.84	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	GOLGA6L9	A6NEM1	432 aa		12.84	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	TMCO5B	A8MYB1	307 aa		12.84	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	KCNJ18	B7U540	433 aa		12.84	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	TUBB4A	P04350	444 aa		12.84	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	FGR	P09769	529 aa		12.84	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	ERCC5	P28715	1186 aa	Predicted RBP	12.84	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	ZBED6	P86452	979 aa		12.84	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	CYP27A1	Q02318	531 aa		12.84	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	RASSF7	Q02833	373 aa		12.84	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	KCNJ12	Q14500	433 aa		12.84	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	PDXDC2P	Q6P474	469 aa		12.84	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	HEATR3	Q7Z4Q2	680 aa		12.84	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	CLEC10A	Q8IUN9	316 aa		12.84	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	12.84	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	CHCHD4	Q8N4Q1	142 aa		12.84	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	PNMA1	Q8ND90	353 aa		12.84	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	PANX2	Q96RD6	677 aa		12.84	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	POLD4	Q9HCU8	107 aa		12.84	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	ABHD10	Q9NUJ1	306 aa		12.84	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	DAGLA	Q9Y4D2	1042 aa		12.84	□□□□□ -0.35
CDK5RAP3-231	ENST00000584063	LRRIQ3	A6PVS8	624 aa	Predicted RBP	12.83	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	COPB1	P53618	953 aa	Known RBP	12.83	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	ATP2B2	Q01814	1243 aa		12.83	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	PFKFB3	Q16875	520 aa	Predicted RBP	12.83	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	C12orf60	Q5U649	245 aa		12.83	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	CDKAL1	Q5VV42	579 aa		12.83	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	PCMTD1	Q96MG8	357 aa	Predicted RBP	12.83	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	VAT1L	Q9HCJ6	419 aa		12.83	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	USP40	Q9NVE5	1235 aa		12.83	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	TTC26	A0AVF1	554 aa		12.83	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	FAM170A	A1A519	330 aa		12.83	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	PPIP5K2	O43314	1243 aa		12.83	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	DDAH1	O94760	285 aa		12.83	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	MYCLP1	P12525	358 aa	Predicted RBP	12.83	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	MATR3	P43243	847 aa	Known RBP eCLIP	12.83	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	TMC4	Q7Z404	712 aa		12.83	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	VMP1	Q96GC9	406 aa		12.83	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	EYA3	Q99504	573 aa		12.83	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	KAT14	Q9H8E8	782 aa		12.83	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	ETAA1	Q9NY74	926 aa		12.83	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	BLOC1S6	Q9UL45	172 aa		12.83	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	PDS5A	Q29RF7	1337 aa	Known RBP	12.83	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063		A0A1B0GUL6	1792 aa		12.83	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	MACROD2	A1Z1Q3	448 aa		12.82	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	CTAGE15	A4D2H0	777 aa		12.82	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	CTAGE8	P0CG41	777 aa		12.82	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	SMARCA1	P28370	1054 aa		12.82	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	ARHGAP25	P42331	645 aa		12.82	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	DNA2	P51530	1060 aa		12.82	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	ZNF132	P52740	706 aa		12.82	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	CTAGE6	Q86UF2	777 aa		12.82	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	SLF2	Q8IX21	1173 aa		12.82	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	CTAGE4	Q8IX94	777 aa		12.82	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	MPHOSPH6	Q99547	160 aa	Known RBP	12.82	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	NAPG	Q99747	312 aa	Predicted RBP	12.82	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	GINM1	Q9NU53	330 aa		12.82	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	SMARCAL1	Q9NZC9	954 aa		12.82	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	CCDC151	A5D8V7	595 aa		12.82	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	FAM196B	A6NMK8	535 aa		12.82	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	ORC4	O43929	436 aa		12.82	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	ECE2	O60344	883 aa		12.82	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	TPPP	O94811	219 aa		12.82	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	ATP1A1	P05023	1023 aa	Known RBP	12.82	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms