RNA–Protein interactions for RNA: ENST00000581631.1

SMCHD1-206, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 729 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-206ENST00000581631 PPP2R5EQ16537 467 aa6.1□□□□□ -1.43
SMCHD1-206ENST00000581631 IQCEQ6IPM2 695 aa6.1□□□□□ -1.43
SMCHD1-206ENST00000581631 ARRDC4Q8NCT1 418 aa6.1□□□□□ -1.43
SMCHD1-206ENST00000581631 ZSWIM3Q96MP5 696 aa6.1□□□□□ -1.43
SMCHD1-206ENST00000581631 APBA2Q99767 749 aa6.1□□□□□ -1.43
SMCHD1-206ENST00000581631 MEGF9Q9H1U4 602 aa6.1□□□□□ -1.43
SMCHD1-206ENST00000581631 DTLQ9NZJ0 730 aa6.1□□□□□ -1.43
SMCHD1-206ENST00000581631 TCRBV5S2A0A599 114 aa6.09□□□□□ -1.43
SMCHD1-206ENST00000581631 PATE3B3GLJ2 98 aa6.09□□□□□ -1.43
SMCHD1-206ENST00000581631 SCAMP3O14828 347 aaKnown RBP6.09□□□□□ -1.43
SMCHD1-206ENST00000581631 TBX1O43435 398 aa6.09□□□□□ -1.43
SMCHD1-206ENST00000581631 GDF5P43026 501 aa6.09□□□□□ -1.43
SMCHD1-206ENST00000581631 NASPP49321 788 aaPredicted RBP6.09□□□□□ -1.43
SMCHD1-206ENST00000581631 HMGA2P52926 109 aa6.09□□□□□ -1.43
SMCHD1-206ENST00000581631 PRAMEF18Q5VWM3 479 aa6.09□□□□□ -1.43
SMCHD1-206ENST00000581631 TEPPQ6URK8 271 aa6.09□□□□□ -1.43
SMCHD1-206ENST00000581631 CEP68Q76N32 757 aa6.09□□□□□ -1.43
SMCHD1-206ENST00000581631 MENTQ9BUN1 341 aa6.09□□□□□ -1.43
SMCHD1-206ENST00000581631 MRIQ9BWK5 157 aa6.09□□□□□ -1.43
SMCHD1-206ENST00000581631 PCED1AQ9H1Q7 454 aa6.09□□□□□ -1.43
SMCHD1-206ENST00000581631 LRG1P02750 347 aa6.08□□□□□ -1.44
SMCHD1-206ENST00000581631 GTF2A2P52657 109 aa6.08□□□□□ -1.44
SMCHD1-206ENST00000581631 PPP2CBP62714 309 aa6.08□□□□□ -1.44
SMCHD1-206ENST00000581631 PPP2CAP67775 309 aa6.08□□□□□ -1.44
SMCHD1-206ENST00000581631 ACBD5Q5T8D3 534 aaPredicted RBP6.08□□□□□ -1.44
SMCHD1-206ENST00000581631 CIR1Q86X95 450 aaPredicted RBP6.08□□□□□ -1.44
SMCHD1-206ENST00000581631 RCBTB1Q8NDN9 531 aa6.08□□□□□ -1.44
SMCHD1-206ENST00000581631 BTN2A2Q8WVV5 523 aa6.08□□□□□ -1.44
SMCHD1-206ENST00000581631 DIO2Q92813 273 aa6.08□□□□□ -1.44
SMCHD1-206ENST00000581631 TOE1Q96GM8 510 aaKnown RBP6.08□□□□□ -1.44
SMCHD1-206ENST00000581631 CDK5RAP1Q96SZ6 601 aaKnown RBP6.08□□□□□ -1.44
SMCHD1-206ENST00000581631 PTPN18Q99952 460 aa6.08□□□□□ -1.44
SMCHD1-206ENST00000581631 TMEM168Q9H0V1 697 aa6.08□□□□□ -1.44
SMCHD1-206ENST00000581631 HSPBP1Q9NZL4 362 aa6.08□□□□□ -1.44
SMCHD1-206ENST00000581631 NPEPPSL1A6NEC2 478 aa6.07□□□□□ -1.44
SMCHD1-206ENST00000581631 NOP56O00567 594 aaKnown RBP6.07□□□□□ -1.44
SMCHD1-206ENST00000581631 CAPNS1P04632 268 aa6.07□□□□□ -1.44
SMCHD1-206ENST00000581631 KCNAB2Q13303 367 aa6.07□□□□□ -1.44
SMCHD1-206ENST00000581631 PROSER1Q86XN7 944 aa6.07□□□□□ -1.44
SMCHD1-206ENST00000581631 ZFPM1Q8IX07 1006 aa6.07□□□□□ -1.44
SMCHD1-206ENST00000581631 KBTBD2Q8IY47 623 aa6.07□□□□□ -1.44
SMCHD1-206ENST00000581631 TRMT2BQ96GJ1 504 aaKnown RBP6.07□□□□□ -1.44
SMCHD1-206ENST00000581631 VPS11Q9H270 941 aa6.07□□□□□ -1.44
SMCHD1-206ENST00000581631 H7BY64 318 aa6.06□□□□□ -1.44
SMCHD1-206ENST00000581631 HGSO14964 777 aaPredicted RBP6.06□□□□□ -1.44
SMCHD1-206ENST00000581631 FZD7O75084 574 aa6.06□□□□□ -1.44
SMCHD1-206ENST00000581631 CYP1A1P04798 512 aaPredicted RBP6.06□□□□□ -1.44
SMCHD1-206ENST00000581631 NAT2P11245 290 aa6.06□□□□□ -1.44
SMCHD1-206ENST00000581631 SELENOPP49908 381 aa6.06□□□□□ -1.44
SMCHD1-206ENST00000581631 NCAPHQ15003 741 aa6.06□□□□□ -1.44
SMCHD1-206ENST00000581631 SLFN13Q68D06 897 aa6.06□□□□□ -1.44
SMCHD1-206ENST00000581631 DENND5AQ6IQ26 1287 aa6.06□□□□□ -1.44
SMCHD1-206ENST00000581631 KLHL36Q8N4N3 616 aa6.06□□□□□ -1.44
SMCHD1-206ENST00000581631 C1orf159Q96HA4 380 aa6.06□□□□□ -1.44
SMCHD1-206ENST00000581631 TMEM169Q96HH4 297 aa6.06□□□□□ -1.44
SMCHD1-206ENST00000581631 CLIC6Q96NY7 704 aa6.06□□□□□ -1.44
SMCHD1-206ENST00000581631 CDIP1Q9H305 208 aa6.06□□□□□ -1.44
SMCHD1-206ENST00000581631 L2HGDHQ9H9P8 463 aa6.06□□□□□ -1.44
SMCHD1-206ENST00000581631 HOXC12P31275 282 aa6.05□□□□□ -1.44
SMCHD1-206ENST00000581631 NFATC3Q12968 1075 aa6.05□□□□□ -1.44
SMCHD1-206ENST00000581631 CHRNA2Q15822 529 aa6.05□□□□□ -1.44
SMCHD1-206ENST00000581631 PRSS53Q2L4Q9 553 aa6.05□□□□□ -1.44
SMCHD1-206ENST00000581631 ZNF585AQ6P3V2 769 aa6.05□□□□□ -1.44
SMCHD1-206ENST00000581631 ARHGEF18Q6ZSZ5 1173 aa6.05□□□□□ -1.44
SMCHD1-206ENST00000581631 ZNF227Q86WZ6 799 aa6.05□□□□□ -1.44
SMCHD1-206ENST00000581631 SEC16BQ96JE7 1060 aa6.05□□□□□ -1.44
SMCHD1-206ENST00000581631 TMEM209Q96SK2 561 aa6.05□□□□□ -1.44
SMCHD1-206ENST00000581631 SLITRK6Q9H5Y7 841 aa6.05□□□□□ -1.44
SMCHD1-206ENST00000581631 TESMINQ9Y4I5 508 aa6.05□□□□□ -1.44
SMCHD1-206ENST00000581631 PCDHB4Q9Y5E5 795 aa6.05□□□□□ -1.44
SMCHD1-206ENST00000581631 MEFVO15553 781 aaPredicted RBP6.04□□□□□ -1.44
SMCHD1-206ENST00000581631 ITGAVP06756 1048 aa6.04□□□□□ -1.44
SMCHD1-206ENST00000581631 LCP1P13796 627 aa6.04□□□□□ -1.44
SMCHD1-206ENST00000581631 SF1Q15637 639 aaKnown RBP6.04□□□□□ -1.44
SMCHD1-206ENST00000581631 SPDYAQ5MJ70 313 aa6.04□□□□□ -1.44
SMCHD1-206ENST00000581631 STEAP3Q658P3 488 aa6.04□□□□□ -1.44
SMCHD1-206ENST00000581631 PALM2Q8IXS6 379 aa6.04□□□□□ -1.44
SMCHD1-206ENST00000581631 Q8TCH9 128 aa6.04□□□□□ -1.44
SMCHD1-206ENST00000581631 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.04□□□□□ -1.44
SMCHD1-206ENST00000581631 WRNIP1Q96S55 665 aa6.04□□□□□ -1.44
SMCHD1-206ENST00000581631 ADAM29Q9UKF5 820 aa6.04□□□□□ -1.44
SMCHD1-206ENST00000581631 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.04□□□□□ -1.44
SMCHD1-206ENST00000581631 COA3Q9Y2R0 106 aaPredicted RBP6.04□□□□□ -1.44
SMCHD1-206ENST00000581631 NPFFR2Q9Y5X5 522 aa6.04□□□□□ -1.44
SMCHD1-206ENST00000581631 CYP7B1O75881 506 aa6.03□□□□□ -1.44
SMCHD1-206ENST00000581631 KLHL18O94889 574 aa6.03□□□□□ -1.44
SMCHD1-206ENST00000581631 CNOT4O95628 575 aaKnown RBP6.03□□□□□ -1.44
SMCHD1-206ENST00000581631 AMHP03971 560 aa6.03□□□□□ -1.44
SMCHD1-206ENST00000581631 GFRA1P56159 465 aa6.03□□□□□ -1.44
SMCHD1-206ENST00000581631 HDLBPQ00341 1268 aaKnown RBP6.03□□□□□ -1.44
SMCHD1-206ENST00000581631 YIPF4Q9BSR8 244 aa6.03□□□□□ -1.44
SMCHD1-206ENST00000581631 RBPJLQ9UBG7 517 aa6.03□□□□□ -1.44
SMCHD1-206ENST00000581631 CROTQ9UKG9 612 aa6.03□□□□□ -1.44
SMCHD1-206ENST00000581631 STRIP2Q9ULQ0 834 aa6.03□□□□□ -1.44
SMCHD1-206ENST00000581631 MUSKO15146 869 aa6.02□□□□□ -1.45
SMCHD1-206ENST00000581631 MYO1BO43795 1136 aa6.02□□□□□ -1.45
SMCHD1-206ENST00000581631 ZNF623O75123 536 aa6.02□□□□□ -1.45
SMCHD1-206ENST00000581631 SNRPB2P08579 225 aaKnown RBP6.02□□□□□ -1.45
SMCHD1-206ENST00000581631 LTBRP36941 435 aa6.02□□□□□ -1.45
SMCHD1-206ENST00000581631 KRTAP1-1Q07627 177 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 88 ms