RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 LDLRAD1Q5T700 205 aa11.83□□□□□ -0.52
SS18-217ENST00000580958 KRT79Q5XKE5 535 aa11.83□□□□□ -0.52
SS18-217ENST00000580958 NSMFQ6X4W1 530 aa11.83□□□□□ -0.52
SS18-217ENST00000580958 RNF207Q6ZRF8 634 aa11.83□□□□□ -0.52
SS18-217ENST00000580958 PLA2G4DQ86XP0 818 aa11.83□□□□□ -0.52
SS18-217ENST00000580958 SAMD3Q8N6K7 520 aa11.83□□□□□ -0.52
SS18-217ENST00000580958 PROCA1Q8NCQ7 364 aaPredicted RBP11.83□□□□□ -0.52
SS18-217ENST00000580958 SPATA20Q8TB22 786 aa11.83□□□□□ -0.52
SS18-217ENST00000580958 OPTNQ96CV9 577 aa11.83□□□□□ -0.52
SS18-217ENST00000580958 CDK5RAP3Q96JB5 506 aa11.83□□□□□ -0.52
SS18-217ENST00000580958 ZFP91Q96JP5 570 aaPredicted RBP11.83□□□□□ -0.52
SS18-217ENST00000580958 TAAR1Q96RJ0 339 aa11.83□□□□□ -0.52
SS18-217ENST00000580958 PPP1R9BQ96SB3 815 aa11.83□□□□□ -0.52
SS18-217ENST00000580958 NUDT12Q9BQG2 462 aa11.83□□□□□ -0.52
SS18-217ENST00000580958 BPIFA3Q9BQP9 254 aa11.83□□□□□ -0.52
SS18-217ENST00000580958 CUEDC2Q9H467 287 aa11.83□□□□□ -0.52
SS18-217ENST00000580958 PLSCR2Q9NRY7 297 aa11.83□□□□□ -0.52
SS18-217ENST00000580958 ZNF214Q9UL59 606 aaPredicted RBP11.83□□□□□ -0.52
SS18-217ENST00000580958 MYH11P35749 1972 aa11.82□□□□□ -0.52
SS18-217ENST00000580958 BECN2A8MW95 431 aa11.82□□□□□ -0.52
SS18-217ENST00000580958 GOLGA6L19H0YKK7 550 aa11.82□□□□□ -0.52
SS18-217ENST00000580958 ATP2A1O14983 1001 aa11.82□□□□□ -0.52
SS18-217ENST00000580958 AP5Z1O43299 807 aa11.82□□□□□ -0.52
SS18-217ENST00000580958 CHRM1P11229 460 aaPredicted RBP11.82□□□□□ -0.52
SS18-217ENST00000580958 GJA5P36382 358 aa11.82□□□□□ -0.52
SS18-217ENST00000580958 IRX5P78411 483 aaPredicted RBP11.82□□□□□ -0.52
SS18-217ENST00000580958 PLCB2Q00722 1185 aa11.82□□□□□ -0.52
SS18-217ENST00000580958 BAATQ14032 418 aaPredicted RBP11.82□□□□□ -0.52
SS18-217ENST00000580958 PLS1Q14651 629 aa11.82□□□□□ -0.52
SS18-217ENST00000580958 TKFCQ3LXA3 575 aa11.82□□□□□ -0.52
SS18-217ENST00000580958 TMEM119Q4V9L6 283 aa11.82□□□□□ -0.52
SS18-217ENST00000580958 TRIML1Q8N9V2 468 aa11.82□□□□□ -0.52
SS18-217ENST00000580958 IL31RAQ8NI17 732 aa11.82□□□□□ -0.52
SS18-217ENST00000580958 PDLIM2Q96JY6 352 aa11.82□□□□□ -0.52
SS18-217ENST00000580958 FAM20AQ96MK3 541 aa11.82□□□□□ -0.52
SS18-217ENST00000580958 TEX13BQ9BXU2 312 aa11.82□□□□□ -0.52
SS18-217ENST00000580958 MAGEF1Q9HAY2 307 aa11.82□□□□□ -0.52
SS18-217ENST00000580958 MAP3K20Q9NYL2 800 aaKnown RBP11.82□□□□□ -0.52
SS18-217ENST00000580958 RABGAP1Q9Y3P9 1069 aa11.82□□□□□ -0.52
SS18-217ENST00000580958 FRMPD4Q14CM0 1322 aa11.82□□□□□ -0.52
SS18-217ENST00000580958 SRCAPQ6ZRS2 3230 aa11.81□□□□□ -0.52
SS18-217ENST00000580958 SOCS7O14512 581 aa11.81□□□□□ -0.52
SS18-217ENST00000580958 ADCY5O95622 1261 aa11.81□□□□□ -0.52
SS18-217ENST00000580958 EIF2AK2P19525 551 aaKnown RBP11.81□□□□□ -0.52
SS18-217ENST00000580958 HOXA7P31268 230 aaPredicted RBP11.81□□□□□ -0.52
SS18-217ENST00000580958 CCT6AP40227 531 aaKnown RBP11.81□□□□□ -0.52
SS18-217ENST00000580958 IRX3P78415 501 aaPredicted RBP11.81□□□□□ -0.52
SS18-217ENST00000580958 SPIRE1Q08AE8 756 aa11.81□□□□□ -0.52
SS18-217ENST00000580958 MOGSQ13724 837 aa11.81□□□□□ -0.52
SS18-217ENST00000580958 DHX8Q14562 1220 aaKnown RBP11.81□□□□□ -0.52
SS18-217ENST00000580958 ECM1Q16610 540 aa11.81□□□□□ -0.52
SS18-217ENST00000580958 CEP55Q53EZ4 464 aa11.81□□□□□ -0.52
SS18-217ENST00000580958 NCAPH2Q6IBW4 605 aa11.81□□□□□ -0.52
SS18-217ENST00000580958 SLC5A5Q92911 643 aa11.81□□□□□ -0.52
SS18-217ENST00000580958 SLC10A4Q96EP9 437 aa11.81□□□□□ -0.52
SS18-217ENST00000580958 MXRA8Q9BRK3 442 aa11.81□□□□□ -0.52
SS18-217ENST00000580958 OCEL1Q9H607 264 aa11.81□□□□□ -0.52
SS18-217ENST00000580958 ACAD9Q9H845 621 aa11.81□□□□□ -0.52
SS18-217ENST00000580958 BLOC1S4Q9NUP1 217 aa11.81□□□□□ -0.52
SS18-217ENST00000580958 KBTBD4Q9NVX7 518 aa11.81□□□□□ -0.52
SS18-217ENST00000580958 VAV3Q9UKW4 847 aa11.81□□□□□ -0.52
SS18-217ENST00000580958 AGTPBP1Q9UPW5 1226 aa11.81□□□□□ -0.52
SS18-217ENST00000580958 MCM3APO60318 1980 aa11.81□□□□□ -0.52
SS18-217ENST00000580958 MYH9P35579 1960 aaKnown RBP11.8□□□□□ -0.52
SS18-217ENST00000580958 MEIS1O00470 390 aa11.8□□□□□ -0.52
SS18-217ENST00000580958 SLC26A4O43511 780 aa11.8□□□□□ -0.52
SS18-217ENST00000580958 PEX10O60683 326 aa11.8□□□□□ -0.52
SS18-217ENST00000580958 RPN1P04843 607 aaKnown RBP11.8□□□□□ -0.52
SS18-217ENST00000580958 ARP10275 920 aa11.8□□□□□ -0.52
SS18-217ENST00000580958 SETQ01105 290 aaPredicted RBP11.8□□□□□ -0.52
SS18-217ENST00000580958 MCM6Q14566 821 aa11.8□□□□□ -0.52
SS18-217ENST00000580958 HYIQ5T013 277 aa11.8□□□□□ -0.52
SS18-217ENST00000580958 POTEEQ6S8J3 1075 aa11.8□□□□□ -0.52
SS18-217ENST00000580958 LBX2Q6XYB7 198 aa11.8□□□□□ -0.52
SS18-217ENST00000580958 KCNK18Q7Z418 384 aa11.8□□□□□ -0.52
SS18-217ENST00000580958 MLKLQ8NB16 471 aa11.8□□□□□ -0.52
SS18-217ENST00000580958 RAD54LQ92698 747 aa11.8□□□□□ -0.52
SS18-217ENST00000580958 GSDMAQ96QA5 445 aa11.8□□□□□ -0.52
SS18-217ENST00000580958 PURBQ96QR8 312 aaKnown RBP11.8□□□□□ -0.52
SS18-217ENST00000580958 ASCC2Q9H1I8 757 aaPredicted RBP11.8□□□□□ -0.52
SS18-217ENST00000580958 NMRK2Q9NPI5 230 aa11.8□□□□□ -0.52
SS18-217ENST00000580958 PXMP2Q9NR77 195 aa11.8□□□□□ -0.52
SS18-217ENST00000580958 BTBD7Q9P203 1132 aa11.8□□□□□ -0.52
SS18-217ENST00000580958 STK17AQ9UEE5 414 aa11.8□□□□□ -0.52
SS18-217ENST00000580958 DACH1Q9UI36 760 aa11.8□□□□□ -0.52
SS18-217ENST00000580958 PLXNB2O15031 1838 aa11.8□□□□□ -0.52
SS18-217ENST00000580958 PLXNA1Q9UIW2 1896 aa11.8□□□□□ -0.52
SS18-217ENST00000580958 KDM3AQ9Y4C1 1321 aa11.8□□□□□ -0.52
SS18-217ENST00000580958 LRRC37A2A6NM11 1700 aa11.8□□□□□ -0.52
SS18-217ENST00000580958 POTEB3A0JP26 581 aa11.79□□□□□ -0.52
SS18-217ENST00000580958 SMTNL1A8MU46 457 aa11.79□□□□□ -0.52
SS18-217ENST00000580958 KLRC4O43908 158 aa11.79□□□□□ -0.52
SS18-217ENST00000580958 MED24O75448 989 aa11.79□□□□□ -0.52
SS18-217ENST00000580958 CNMDO75829 334 aa11.79□□□□□ -0.52
SS18-217ENST00000580958 MYL1P05976 194 aa11.79□□□□□ -0.52
SS18-217ENST00000580958 MYCLP12524 364 aaPredicted RBP11.79□□□□□ -0.52
SS18-217ENST00000580958 HERVK_113P62684 666 aa11.79□□□□□ -0.52
SS18-217ENST00000580958 MRPS9P82933 396 aaKnown RBP11.79□□□□□ -0.52
SS18-217ENST00000580958 NCAPHQ15003 741 aa11.79□□□□□ -0.52
SS18-217ENST00000580958 PGM5Q15124 567 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms