RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 CCDC183Q5T5S1 534 aa17.23■□□□□ 0.35
SS18-215ENST00000580642 KANK3Q6NY19 840 aa17.23■□□□□ 0.35
SS18-215ENST00000580642 KCNV1Q6PIU1 500 aa17.23■□□□□ 0.35
SS18-215ENST00000580642 GPR142Q7Z601 462 aa17.23■□□□□ 0.35
SS18-215ENST00000580642 DACT1Q9NYF0 836 aa17.23■□□□□ 0.35
SS18-215ENST00000580642 LRWD1Q9UFC0 647 aa17.23■□□□□ 0.35
SS18-215ENST00000580642 CCDC39Q9UFE4 941 aa17.23■□□□□ 0.35
SS18-215ENST00000580642 CPA4Q9UI42 421 aa17.23■□□□□ 0.35
SS18-215ENST00000580642 HOOK1Q9UJC3 728 aaKnown RBP17.23■□□□□ 0.35
SS18-215ENST00000580642 MRVI1Q9Y6F6 885 aa17.23■□□□□ 0.35
SS18-215ENST00000580642 MYH7BA7E2Y1 1941 aa17.23■□□□□ 0.35
SS18-215ENST00000580642 A0A1B0GVL5 298 aa17.22■□□□□ 0.35
SS18-215ENST00000580642 SOWAHBA6NEL2 793 aa17.22■□□□□ 0.35
SS18-215ENST00000580642 IPO5O00410 1097 aaKnown RBP17.22■□□□□ 0.35
SS18-215ENST00000580642 PEX10O60683 326 aa17.22■□□□□ 0.35
SS18-215ENST00000580642 TGFB3P10600 412 aa17.22■□□□□ 0.35
SS18-215ENST00000580642 LIG1P18858 919 aa17.22■□□□□ 0.35
SS18-215ENST00000580642 MUTP22033 750 aa17.22■□□□□ 0.35
SS18-215ENST00000580642 TECP42680 631 aa17.22■□□□□ 0.35
SS18-215ENST00000580642 NDUFA8P51970 172 aa17.22■□□□□ 0.35
SS18-215ENST00000580642 GRIN1Q05586 938 aa17.22■□□□□ 0.35
SS18-215ENST00000580642 PPP2R5CQ13362 524 aa17.22■□□□□ 0.35
SS18-215ENST00000580642 ZNF792Q3KQV3 632 aa17.22■□□□□ 0.35
SS18-215ENST00000580642 WDR78Q5VTH9 848 aa17.22■□□□□ 0.35
SS18-215ENST00000580642 IQUBQ8NA54 791 aa17.22■□□□□ 0.35
SS18-215ENST00000580642 IL31RAQ8NI17 732 aa17.22■□□□□ 0.35
SS18-215ENST00000580642 ERMNQ8TAM6 284 aa17.22■□□□□ 0.35
SS18-215ENST00000580642 SOCS4Q8WXH5 440 aa17.22■□□□□ 0.35
SS18-215ENST00000580642 SYMPKQ92797 1274 aaKnown RBP17.22■□□□□ 0.35
SS18-215ENST00000580642 ZNF577Q9BSK1 485 aa17.22■□□□□ 0.35
SS18-215ENST00000580642 CUEDC2Q9H467 287 aa17.22■□□□□ 0.35
SS18-215ENST00000580642 KCNH7Q9NS40 1196 aa17.22■□□□□ 0.35
SS18-215ENST00000580642 NR1I2O75469 434 aa17.21■□□□□ 0.35
SS18-215ENST00000580642 PSMD10O75832 226 aa17.21■□□□□ 0.35
SS18-215ENST00000580642 ZNF202O95125 648 aa17.21■□□□□ 0.35
SS18-215ENST00000580642 HOXC6P09630 235 aa17.21■□□□□ 0.35
SS18-215ENST00000580642 MYCLP12524 364 aaPredicted RBP17.21■□□□□ 0.35
SS18-215ENST00000580642 ADORA2AP29274 412 aa17.21■□□□□ 0.35
SS18-215ENST00000580642 UBXN2AP68543 259 aa17.21■□□□□ 0.35
SS18-215ENST00000580642 CNTN2Q02246 1040 aa17.21■□□□□ 0.35
SS18-215ENST00000580642 PDE4DQ08499 809 aa17.21■□□□□ 0.35
SS18-215ENST00000580642 KRT79Q5XKE5 535 aa17.21■□□□□ 0.35
SS18-215ENST00000580642 HAUS3Q68CZ6 603 aa17.21■□□□□ 0.35
SS18-215ENST00000580642 MAMDC4Q6UXC1 1216 aa17.21■□□□□ 0.35
SS18-215ENST00000580642 GIMAP8Q8ND71 665 aaPredicted RBP17.21■□□□□ 0.35
SS18-215ENST00000580642 RDM1Q8NG50 284 aa17.21■□□□□ 0.35
SS18-215ENST00000580642 CYP2W1Q8TAV3 490 aa17.21■□□□□ 0.35
SS18-215ENST00000580642 SENP7Q9BQF6 1050 aa17.21■□□□□ 0.35
SS18-215ENST00000580642 GOLPH3LQ9H4A5 285 aa17.21■□□□□ 0.35
SS18-215ENST00000580642 MAGEF1Q9HAY2 307 aa17.21■□□□□ 0.35
SS18-215ENST00000580642 AGO4Q9HCK5 861 aaKnown RBP17.21■□□□□ 0.35
SS18-215ENST00000580642 NFASCO94856 1347 aa17.21■□□□□ 0.34
SS18-215ENST00000580642 KDM3AQ9Y4C1 1321 aa17.21■□□□□ 0.34
SS18-215ENST00000580642 ZNF236Q9UL36 1845 aa17.2■□□□□ 0.34
SS18-215ENST00000580642 SPATA31C2B4DYI2 1134 aa17.2■□□□□ 0.34
SS18-215ENST00000580642 GAS7O60861 476 aa17.2■□□□□ 0.34
SS18-215ENST00000580642 LRCH2Q5VUJ6 765 aa17.2■□□□□ 0.34
SS18-215ENST00000580642 CAVIN1Q6NZI2 390 aaKnown RBP17.2■□□□□ 0.34
SS18-215ENST00000580642 OTOP1Q7RTM1 612 aa17.2■□□□□ 0.34
SS18-215ENST00000580642 NEK9Q8TD19 979 aa17.2■□□□□ 0.34
SS18-215ENST00000580642 CALML4Q96GE6 196 aa17.2■□□□□ 0.34
SS18-215ENST00000580642 ZIC5Q96T25 663 aa17.2■□□□□ 0.34
SS18-215ENST00000580642 TEKT3Q9BXF9 490 aa17.2■□□□□ 0.34
SS18-215ENST00000580642 NUP62CLQ9H1M0 184 aa17.2■□□□□ 0.34
SS18-215ENST00000580642 CLSTN2Q9H4D0 955 aa17.2■□□□□ 0.34
SS18-215ENST00000580642 VAV3Q9UKW4 847 aa17.2■□□□□ 0.34
SS18-215ENST00000580642 ASTN1O14525 1302 aa17.2■□□□□ 0.34
SS18-215ENST00000580642 SLFN14P0C7P3 912 aa17.19■□□□□ 0.34
SS18-215ENST00000580642 ARP10275 920 aa17.19■□□□□ 0.34
SS18-215ENST00000580642 SPIRE1Q08AE8 756 aa17.19■□□□□ 0.34
SS18-215ENST00000580642 HYIQ5T013 277 aa17.19■□□□□ 0.34
SS18-215ENST00000580642 MORN1Q5T089 497 aa17.19■□□□□ 0.34
SS18-215ENST00000580642 B3GNT9Q6UX72 402 aa17.19■□□□□ 0.34
SS18-215ENST00000580642 DPP9Q86TI2 863 aa17.19■□□□□ 0.34
SS18-215ENST00000580642 CABP7Q86V35 215 aa17.19■□□□□ 0.34
SS18-215ENST00000580642 EPSTI1Q96J88 318 aa17.19■□□□□ 0.34
SS18-215ENST00000580642 FGD4Q96M96 766 aa17.19■□□□□ 0.34
SS18-215ENST00000580642 PURBQ96QR8 312 aaKnown RBP17.19■□□□□ 0.34
SS18-215ENST00000580642 NT5C3AQ9H0P0 336 aa17.19■□□□□ 0.34
SS18-215ENST00000580642 SAGE1Q9NXZ1 904 aa17.19■□□□□ 0.34
SS18-215ENST00000580642 TCEAL9Q9UHQ7 104 aa17.19■□□□□ 0.34
SS18-215ENST00000580642 SYNGAP1Q96PV0 1343 aa17.19■□□□□ 0.34
SS18-215ENST00000580642 POLR2DO15514 142 aaKnown RBP17.18■□□□□ 0.34
SS18-215ENST00000580642 AOC2O75106 756 aa17.18■□□□□ 0.34
SS18-215ENST00000580642 MYL1P05976 194 aa17.18■□□□□ 0.34
SS18-215ENST00000580642 SFNP31947 248 aa17.18■□□□□ 0.34
SS18-215ENST00000580642 VEGFBP49765 207 aa17.18■□□□□ 0.34
SS18-215ENST00000580642 KRT76Q01546 638 aa17.18■□□□□ 0.34
SS18-215ENST00000580642 MAP2K5Q13163 448 aa17.18■□□□□ 0.34
SS18-215ENST00000580642 GRM1Q13255 1194 aa17.18■□□□□ 0.34
SS18-215ENST00000580642 RBM43Q6ZSC3 357 aaKnown RBP17.18■□□□□ 0.34
SS18-215ENST00000580642 NUDT12Q9BQG2 462 aa17.18■□□□□ 0.34
SS18-215ENST00000580642 SDF4Q9BRK5 362 aa17.18■□□□□ 0.34
SS18-215ENST00000580642 POLR3CQ9BUI4 534 aaPredicted RBP17.18■□□□□ 0.34
SS18-215ENST00000580642 DISC1Q9NRI5 854 aa17.18■□□□□ 0.34
SS18-215ENST00000580642 TMEM63CQ9P1W3 806 aa17.18■□□□□ 0.34
SS18-215ENST00000580642 STK17AQ9UEE5 414 aa17.18■□□□□ 0.34
SS18-215ENST00000580642 DHX15O43143 795 aaKnown RBP17.17■□□□□ 0.34
SS18-215ENST00000580642 COBLO75128 1261 aa17.17■□□□□ 0.34
SS18-215ENST00000580642 RGS20O76081 388 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms