RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 PDGFCQ9NRA1 345 aa11.66□□□□□ -0.54
SS18-210ENST00000578700 RNF146Q9NTX7 359 aa11.66□□□□□ -0.54
SS18-210ENST00000578700 CFAP45Q9UL16 551 aa11.66□□□□□ -0.54
SS18-210ENST00000578700 MTMR7Q9Y216 660 aa11.66□□□□□ -0.54
SS18-210ENST00000578700 NID2Q14112 1375 aa11.66□□□□□ -0.54
SS18-210ENST00000578700 GRIN2DO15399 1336 aa11.65□□□□□ -0.54
SS18-210ENST00000578700 STK36Q9NRP7 1315 aa11.65□□□□□ -0.54
SS18-210ENST00000578700 GOLGA6L4A6NEF3 574 aa11.65□□□□□ -0.54
SS18-210ENST00000578700 GTPBP6O43824 516 aaPredicted RBP11.65□□□□□ -0.54
SS18-210ENST00000578700 CYP2C9P11712 490 aa11.65□□□□□ -0.54
SS18-210ENST00000578700 BMP1P13497 986 aa11.65□□□□□ -0.54
SS18-210ENST00000578700 ATP2A2P16615 1042 aaKnown RBP11.65□□□□□ -0.54
SS18-210ENST00000578700 IFNAR1P17181 557 aa11.65□□□□□ -0.54
SS18-210ENST00000578700 SMPD1P17405 629 aa11.65□□□□□ -0.54
SS18-210ENST00000578700 RXRAP19793 462 aa11.65□□□□□ -0.54
SS18-210ENST00000578700 ADD1P35611 737 aaKnown RBP11.65□□□□□ -0.54
SS18-210ENST00000578700 GSE1Q14687 1217 aa11.65□□□□□ -0.54
SS18-210ENST00000578700 SAFBQ15424 915 aaKnown RBP eCLIP11.65□□□□□ -0.54
SS18-210ENST00000578700 SEC23AQ15436 765 aa11.65□□□□□ -0.54
SS18-210ENST00000578700 KLHL40Q2TBA0 621 aa11.65□□□□□ -0.54
SS18-210ENST00000578700 TMEM63BQ5T3F8 832 aa11.65□□□□□ -0.54
SS18-210ENST00000578700 ATL3Q6DD88 541 aa11.65□□□□□ -0.54
SS18-210ENST00000578700 FERMT3Q86UX7 667 aa11.65□□□□□ -0.54
SS18-210ENST00000578700 FBXO16Q8IX29 292 aaPredicted RBP11.65□□□□□ -0.54
SS18-210ENST00000578700 SLC43A3Q8NBI5 491 aa11.65□□□□□ -0.54
SS18-210ENST00000578700 SYAP1Q96A49 352 aaPredicted RBP11.65□□□□□ -0.54
SS18-210ENST00000578700 TRERF1Q96PN7 1200 aa11.65□□□□□ -0.54
SS18-210ENST00000578700 ALG1Q9BT22 464 aa11.65□□□□□ -0.54
SS18-210ENST00000578700 MYL10Q9BUA6 226 aa11.65□□□□□ -0.54
SS18-210ENST00000578700 SLC26A6Q9BXS9 759 aa11.65□□□□□ -0.54
SS18-210ENST00000578700 WNT8AQ9H1J5 351 aa11.65□□□□□ -0.54
SS18-210ENST00000578700 A1CFQ9NQ94 594 aaKnown RBP11.65□□□□□ -0.54
SS18-210ENST00000578700 TCP11L1Q9NUJ3 509 aa11.65□□□□□ -0.54
SS18-210ENST00000578700 MTMR4Q9NYA4 1195 aa11.65□□□□□ -0.54
SS18-210ENST00000578700 GNEQ9Y223 722 aaKnown RBP11.65□□□□□ -0.54
SS18-210ENST00000578700 IGKV6D-41A0A0C4DH26 115 aa11.64□□□□□ -0.55
SS18-210ENST00000578700 DEXIO95424 95 aa11.64□□□□□ -0.55
SS18-210ENST00000578700 TTLL1O95922 423 aa11.64□□□□□ -0.55
SS18-210ENST00000578700 GNAQP50148 359 aa11.64□□□□□ -0.55
SS18-210ENST00000578700 STAT2P52630 851 aa11.64□□□□□ -0.55
SS18-210ENST00000578700 OAZ1P54368 228 aa11.64□□□□□ -0.55
SS18-210ENST00000578700 TTLL4Q14679 1199 aa11.64□□□□□ -0.55
SS18-210ENST00000578700 AAK1Q2M2I8 961 aa11.64□□□□□ -0.55
SS18-210ENST00000578700 KRT40Q6A162 431 aa11.64□□□□□ -0.55
SS18-210ENST00000578700 IQSEC1Q6DN90 963 aa11.64□□□□□ -0.55
SS18-210ENST00000578700 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.64□□□□□ -0.55
SS18-210ENST00000578700 BRAPQ7Z569 592 aa11.64□□□□□ -0.55
SS18-210ENST00000578700 FAM133AQ8N9E0 248 aa11.64□□□□□ -0.55
SS18-210ENST00000578700 PPP1R13LQ8WUF5 828 aa11.64□□□□□ -0.55
SS18-210ENST00000578700 CHURC1Q8WUH1 139 aa11.64□□□□□ -0.55
SS18-210ENST00000578700 MKL1Q969V6 931 aa11.64□□□□□ -0.55
SS18-210ENST00000578700 PURBQ96QR8 312 aaKnown RBP11.64□□□□□ -0.55
SS18-210ENST00000578700 C1QTNF1Q9BXJ1 281 aa11.64□□□□□ -0.55
SS18-210ENST00000578700 SENP2Q9HC62 589 aa11.64□□□□□ -0.55
SS18-210ENST00000578700 LMBRD1Q9NUN5 540 aa11.64□□□□□ -0.55
SS18-210ENST00000578700 STX8Q9UNK0 236 aa11.64□□□□□ -0.55
SS18-210ENST00000578700 PCDHA11Q9Y5I1 949 aa11.64□□□□□ -0.55
SS18-210ENST00000578700 PRRC2BQ5JSZ5 2229 aaKnown RBP11.63□□□□□ -0.55
SS18-210ENST00000578700 FIBPO43427 364 aa11.63□□□□□ -0.55
SS18-210ENST00000578700 CA3P07451 260 aa11.63□□□□□ -0.55
SS18-210ENST00000578700 MYL3P08590 195 aa11.63□□□□□ -0.55
SS18-210ENST00000578700 CDC27P30260 824 aa11.63□□□□□ -0.55
SS18-210ENST00000578700 SLC1A4P43007 532 aa11.63□□□□□ -0.55
SS18-210ENST00000578700 FOSBP53539 338 aa11.63□□□□□ -0.55
SS18-210ENST00000578700 CHMP4BP1P59074 171 aa11.63□□□□□ -0.55
SS18-210ENST00000578700 DNM1Q05193 864 aaKnown RBP11.63□□□□□ -0.55
SS18-210ENST00000578700 MUM1L1Q5H9M0 696 aa11.63□□□□□ -0.55
SS18-210ENST00000578700 FAM47CQ5HY64 1035 aa11.63□□□□□ -0.55
SS18-210ENST00000578700 NSMFQ6X4W1 530 aa11.63□□□□□ -0.55
SS18-210ENST00000578700 KCTD1Q719H9 257 aa11.63□□□□□ -0.55
SS18-210ENST00000578700 FAM160B2Q86V87 743 aa11.63□□□□□ -0.55
SS18-210ENST00000578700 TMEM87AQ8NBN3 555 aa11.63□□□□□ -0.55
SS18-210ENST00000578700 FBXO18Q8NFZ0 1043 aa11.63□□□□□ -0.55
SS18-210ENST00000578700 NEDD1Q8NHV4 660 aa11.63□□□□□ -0.55
SS18-210ENST00000578700 ARNTL2Q8WYA1 636 aa11.63□□□□□ -0.55
SS18-210ENST00000578700 ANKS1AQ92625 1134 aa11.63□□□□□ -0.55
SS18-210ENST00000578700 MAP3K14Q99558 947 aa11.63□□□□□ -0.55
SS18-210ENST00000578700 LZTS2Q9BRK4 669 aa11.63□□□□□ -0.55
SS18-210ENST00000578700 RNF26Q9BY78 433 aaPredicted RBP11.63□□□□□ -0.55
SS18-210ENST00000578700 FTOQ9C0B1 505 aaKnown RBP eCLIP11.63□□□□□ -0.55
SS18-210ENST00000578700 EPHX3Q9H6B9 360 aa11.63□□□□□ -0.55
SS18-210ENST00000578700 TRMT13Q9NUP7 481 aaKnown RBP11.63□□□□□ -0.55
SS18-210ENST00000578700 MTCH2Q9Y6C9 303 aa11.63□□□□□ -0.55
SS18-210ENST00000578700 DTNBO60941 627 aa11.62□□□□□ -0.55
SS18-210ENST00000578700 FDX1P10109 184 aa11.62□□□□□ -0.55
SS18-210ENST00000578700 FDPSP14324 419 aaKnown RBP11.62□□□□□ -0.55
SS18-210ENST00000578700 NKX3-2P78367 333 aa11.62□□□□□ -0.55
SS18-210ENST00000578700 RESTQ13127 1097 aa11.62□□□□□ -0.55
SS18-210ENST00000578700 TAPT1Q6NXT6 567 aa11.62□□□□□ -0.55
SS18-210ENST00000578700 PNMA1Q8ND90 353 aa11.62□□□□□ -0.55
SS18-210ENST00000578700 GMCL1P1Q8NEA9 526 aa11.62□□□□□ -0.55
SS18-210ENST00000578700 PHKBQ93100 1093 aa11.62□□□□□ -0.55
SS18-210ENST00000578700 SPATA32Q96LK8 384 aa11.62□□□□□ -0.55
SS18-210ENST00000578700 GZF1Q9H116 711 aaPredicted RBP11.62□□□□□ -0.55
SS18-210ENST00000578700 BRMS1Q9HCU9 246 aa11.62□□□□□ -0.55
SS18-210ENST00000578700 LRRC37A2A6NM11 1700 aa11.61□□□□□ -0.55
SS18-210ENST00000578700 EPOPA6NHQ4 379 aa11.61□□□□□ -0.55
SS18-210ENST00000578700 PPFIA3O75145 1194 aa11.61□□□□□ -0.55
SS18-210ENST00000578700 SUPT20HL2P0C7V6 817 aa11.61□□□□□ -0.55
SS18-210ENST00000578700 TOP1P11387 765 aaKnown RBP11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms