RNA–Protein interactions for RNA: ENST00000576218.5

SMG6-220, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 902 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-220ENST00000576218 TRIM43Q96BQ3 446 aaPredicted RBP17.47■□□□□ 0.39
SMG6-220ENST00000576218 ZNF274Q96GC6 653 aaPredicted RBP17.47■□□□□ 0.39
SMG6-220ENST00000576218 RNF26Q9BY78 433 aaPredicted RBP17.47■□□□□ 0.39
SMG6-220ENST00000576218 PPP1R12CQ9BZL4 782 aa17.47■□□□□ 0.39
SMG6-220ENST00000576218 SLKQ9H2G2 1235 aaPredicted RBP17.47■□□□□ 0.39
SMG6-220ENST00000576218 CDKL5O76039 1030 aa17.46■□□□□ 0.39
SMG6-220ENST00000576218 RGS20O76081 388 aa17.46■□□□□ 0.39
SMG6-220ENST00000576218 IFNAR1P17181 557 aa17.46■□□□□ 0.39
SMG6-220ENST00000576218 CDK7P50613 346 aa17.46■□□□□ 0.39
SMG6-220ENST00000576218 EVCP57679 992 aa17.46■□□□□ 0.39
SMG6-220ENST00000576218 MRPS9P82933 396 aaKnown RBP17.46■□□□□ 0.39
SMG6-220ENST00000576218 NEDD9Q14511 834 aa17.46■□□□□ 0.39
SMG6-220ENST00000576218 CELF3Q5SZQ8 465 aaKnown RBP17.46■□□□□ 0.39
SMG6-220ENST00000576218 TEX2Q8IWB9 1127 aa17.46■□□□□ 0.39
SMG6-220ENST00000576218 FAM126BQ8IXS8 530 aa17.46■□□□□ 0.39
SMG6-220ENST00000576218 TDHQ8IZJ6 230 aa17.46■□□□□ 0.39
SMG6-220ENST00000576218 EMID1Q96A84 441 aaPredicted RBP17.46■□□□□ 0.39
SMG6-220ENST00000576218 CDHR1Q96JP9 859 aa17.46■□□□□ 0.39
SMG6-220ENST00000576218 PGBD1Q96JS3 809 aa17.46■□□□□ 0.39
SMG6-220ENST00000576218 INPP4AQ96PE3 977 aaPredicted RBP17.46■□□□□ 0.39
SMG6-220ENST00000576218 KATNAL1Q9BW62 490 aa17.46■□□□□ 0.39
SMG6-220ENST00000576218 ANO3Q9BYT9 981 aa17.46■□□□□ 0.39
SMG6-220ENST00000576218 TRIOBPQ9H2D6 2365 aa17.46■□□□□ 0.39
SMG6-220ENST00000576218 KIAA0355O15063 1070 aa17.45■□□□□ 0.38
SMG6-220ENST00000576218 SUPT20HL2P0C7V6 817 aa17.45■□□□□ 0.38
SMG6-220ENST00000576218 ZNF286BP0CG31 522 aa17.45■□□□□ 0.38
SMG6-220ENST00000576218 GNA11P29992 359 aa17.45■□□□□ 0.38
SMG6-220ENST00000576218 ZNF76P36508 570 aa17.45■□□□□ 0.38
SMG6-220ENST00000576218 SP4Q02446 784 aa17.45■□□□□ 0.38
SMG6-220ENST00000576218 FPGSQ05932 587 aa17.45■□□□□ 0.38
SMG6-220ENST00000576218 AP3B2Q13367 1082 aa17.45■□□□□ 0.38
SMG6-220ENST00000576218 MTMR1Q13613 665 aa17.45■□□□□ 0.38
SMG6-220ENST00000576218 NBPF20Q3BBV1 942 aa17.45■□□□□ 0.38
SMG6-220ENST00000576218 TYW1BQ6NUM6 668 aa17.45■□□□□ 0.38
SMG6-220ENST00000576218 BICD2Q8TD16 824 aa17.45■□□□□ 0.38
SMG6-220ENST00000576218 ALG1Q9BT22 464 aa17.45■□□□□ 0.38
SMG6-220ENST00000576218 PKD2L1Q9P0L9 805 aa17.45■□□□□ 0.38
SMG6-220ENST00000576218 B4GALT4O60513 344 aa17.44■□□□□ 0.38
SMG6-220ENST00000576218 NEK4P51957 841 aa17.44■□□□□ 0.38
SMG6-220ENST00000576218 MYSM1Q5VVJ2 828 aa17.44■□□□□ 0.38
SMG6-220ENST00000576218 JAKMIP3Q5VZ66 844 aa17.44■□□□□ 0.38
SMG6-220ENST00000576218 CYFIP1Q7L576 1253 aa17.44■□□□□ 0.38
SMG6-220ENST00000576218 REXO1Q8N1G1 1221 aaKnown RBP17.44■□□□□ 0.38
SMG6-220ENST00000576218 C7orf31Q8N865 590 aa17.44■□□□□ 0.38
SMG6-220ENST00000576218 GIMAP8Q8ND71 665 aaPredicted RBP17.44■□□□□ 0.38
SMG6-220ENST00000576218 GPRASP2Q96D09 838 aa17.44■□□□□ 0.38
SMG6-220ENST00000576218 TRPV6Q9H1D0 765 aa17.44■□□□□ 0.38
SMG6-220ENST00000576218 ALDH8A1Q9H2A2 487 aaPredicted RBP17.44■□□□□ 0.38
SMG6-220ENST00000576218 PRO3102Q9H379 93 aa17.44■□□□□ 0.38
SMG6-220ENST00000576218 HIPK3Q9H422 1215 aa17.44■□□□□ 0.38
SMG6-220ENST00000576218 UPF2Q9HAU5 1272 aaKnown RBP17.44■□□□□ 0.38
SMG6-220ENST00000576218 TMEM260Q9NX78 707 aa17.44■□□□□ 0.38
SMG6-220ENST00000576218 SPATA31C2B4DYI2 1134 aa17.43■□□□□ 0.38
SMG6-220ENST00000576218 DEXIO95424 95 aa17.43■□□□□ 0.38
SMG6-220ENST00000576218 SEC24BO95487 1268 aa17.43■□□□□ 0.38
SMG6-220ENST00000576218 TIMP1P01033 207 aa17.43■□□□□ 0.38
SMG6-220ENST00000576218 ICAM3P32942 547 aa17.43■□□□□ 0.38
SMG6-220ENST00000576218 AK2P54819 239 aa17.43■□□□□ 0.38
SMG6-220ENST00000576218 NLRP5P59047 1200 aa17.43■□□□□ 0.38
SMG6-220ENST00000576218 SP2Q02086 613 aa17.43■□□□□ 0.38
SMG6-220ENST00000576218 MCTP2Q6DN12 878 aa17.43■□□□□ 0.38
SMG6-220ENST00000576218 NFRKBQ6P4R8 1299 aa17.43■□□□□ 0.38
SMG6-220ENST00000576218 METTL7BQ6UX53 244 aa17.43■□□□□ 0.38
SMG6-220ENST00000576218 TMEM199Q8N511 208 aa17.43■□□□□ 0.38
SMG6-220ENST00000576218 SLC43A3Q8NBI5 491 aa17.43■□□□□ 0.38
SMG6-220ENST00000576218 PPP1R13LQ8WUF5 828 aa17.43■□□□□ 0.38
SMG6-220ENST00000576218 TRMT13Q9NUP7 481 aaKnown RBP17.43■□□□□ 0.38
SMG6-220ENST00000576218 VPS54Q9P1Q0 977 aa17.43■□□□□ 0.38
SMG6-220ENST00000576218 TBX21Q9UL17 535 aa17.43■□□□□ 0.38
SMG6-220ENST00000576218 GRIN2DO15399 1336 aa17.43■□□□□ 0.38
SMG6-220ENST00000576218 ESYT2A0FGR8 921 aa17.42■□□□□ 0.38
SMG6-220ENST00000576218 PPFIA4O75335 1185 aa17.42■□□□□ 0.38
SMG6-220ENST00000576218 PSEN2P49810 448 aa17.42■□□□□ 0.38
SMG6-220ENST00000576218 MFSD10Q14728 455 aa17.42■□□□□ 0.38
SMG6-220ENST00000576218 NTRK3Q16288 839 aa17.42■□□□□ 0.38
SMG6-220ENST00000576218 PKN1Q16512 942 aa17.42■□□□□ 0.38
SMG6-220ENST00000576218 HSDL1Q3SXM5 330 aa17.42■□□□□ 0.38
SMG6-220ENST00000576218 ZMYND12Q9H0C1 365 aa17.42■□□□□ 0.38
SMG6-220ENST00000576218 LTBP2Q14767 1821 aa17.42■□□□□ 0.38
SMG6-220ENST00000576218 CD4P01730 458 aa17.41■□□□□ 0.38
SMG6-220ENST00000576218 XBP1P17861 261 aa17.41■□□□□ 0.38
SMG6-220ENST00000576218 PTPN11Q06124 597 aaPredicted RBP17.41■□□□□ 0.38
SMG6-220ENST00000576218 PPIGQ13427 754 aaKnown RBP eCLIP17.41■□□□□ 0.386e-12■■■□□ 18
SMG6-220ENST00000576218 KIAA0753Q2KHM9 967 aa17.41■□□□□ 0.38
SMG6-220ENST00000576218 UTP14CQ5TAP6 766 aaKnown RBP17.41■□□□□ 0.38
SMG6-220ENST00000576218 MFSD5Q6N075 450 aa17.41■□□□□ 0.38
SMG6-220ENST00000576218 JADE2Q9NQC1 790 aa17.41■□□□□ 0.38
SMG6-220ENST00000576218 ZNF215Q9UL58 517 aaPredicted RBP17.41■□□□□ 0.38
SMG6-220ENST00000576218 TPCN1Q9ULQ1 816 aa17.41■□□□□ 0.38
SMG6-220ENST00000576218 CYP2C9P11712 490 aa17.4■□□□□ 0.38
SMG6-220ENST00000576218 ITGB5P18084 799 aa17.4■□□□□ 0.38
SMG6-220ENST00000576218 ITGB8P26012 769 aa17.4■□□□□ 0.38
SMG6-220ENST00000576218 CYP2C18P33260 490 aa17.4■□□□□ 0.38
SMG6-220ENST00000576218 SREBF1P36956 1147 aa17.4■□□□□ 0.38
SMG6-220ENST00000576218 FXR1P51114 621 aaKnown RBP eCLIP17.4■□□□□ 0.38
SMG6-220ENST00000576218 ARHGAP4P98171 946 aa17.4■□□□□ 0.38
SMG6-220ENST00000576218 SCRN1Q12765 414 aa17.4■□□□□ 0.38
SMG6-220ENST00000576218 SEMA3FQ13275 785 aa17.4■□□□□ 0.38
SMG6-220ENST00000576218 PTGISQ16647 500 aa17.4■□□□□ 0.38
SMG6-220ENST00000576218 C8orf34Q49A92 452 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms