RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 SURF6O75683 361 aaKnown RBP7.98□□□□□ -1.13
VPS53-217ENST00000575100 CSF1RP07333 972 aa7.98□□□□□ -1.13
VPS53-217ENST00000575100 ARAFP10398 606 aa7.98□□□□□ -1.13
VPS53-217ENST00000575100 TSPAN7P41732 249 aa7.98□□□□□ -1.13
VPS53-217ENST00000575100 MMP16P51512 607 aa7.98□□□□□ -1.13
VPS53-217ENST00000575100 TBX2Q13207 712 aaPredicted RBP7.98□□□□□ -1.13
VPS53-217ENST00000575100 MSS51Q4VC12 460 aa7.98□□□□□ -1.13
VPS53-217ENST00000575100 GPR158Q5T848 1215 aa7.98□□□□□ -1.13
VPS53-217ENST00000575100 ANKRD45Q5TZF3 282 aa7.98□□□□□ -1.13
VPS53-217ENST00000575100 KIAA0319Q5VV43 1072 aa7.98□□□□□ -1.13
VPS53-217ENST00000575100 FOXB2Q5VYV0 432 aa7.98□□□□□ -1.13
VPS53-217ENST00000575100 SCUBE3Q8IX30 993 aa7.98□□□□□ -1.13
VPS53-217ENST00000575100 GALNT12Q8IXK2 581 aa7.98□□□□□ -1.13
VPS53-217ENST00000575100 OR8H2Q8N162 312 aa7.98□□□□□ -1.13
VPS53-217ENST00000575100 NKAIN3Q8N8D7 197 aa7.98□□□□□ -1.13
VPS53-217ENST00000575100 OTUD7AQ8TE49 926 aaPredicted RBP7.98□□□□□ -1.13
VPS53-217ENST00000575100 SLC7A3Q8WY07 619 aa7.98□□□□□ -1.13
VPS53-217ENST00000575100 GOLGA1Q92805 767 aa7.98□□□□□ -1.13
VPS53-217ENST00000575100 AIDAQ96BJ3 306 aa7.98□□□□□ -1.13
VPS53-217ENST00000575100 GCC1Q96CN9 775 aa7.98□□□□□ -1.13
VPS53-217ENST00000575100 EXOC2Q96KP1 924 aa7.98□□□□□ -1.13
VPS53-217ENST00000575100 PLA2G12BQ9BX93 195 aa7.98□□□□□ -1.13
VPS53-217ENST00000575100 SIL1Q9H173 461 aa7.98□□□□□ -1.13
VPS53-217ENST00000575100 GREM2Q9H772 168 aa7.98□□□□□ -1.13
VPS53-217ENST00000575100 MAN1C1Q9NR34 630 aa7.98□□□□□ -1.13
VPS53-217ENST00000575100 PNMA8BQ9ULN7 279 aaPredicted RBP7.98□□□□□ -1.13
VPS53-217ENST00000575100 CHMP3Q9Y3E7 222 aa7.98□□□□□ -1.13
VPS53-217ENST00000575100 HMMRO75330 724 aa7.97□□□□□ -1.13
VPS53-217ENST00000575100 SLC5A1P13866 664 aa7.97□□□□□ -1.13
VPS53-217ENST00000575100 HOXA10P31260 410 aaPredicted RBP7.97□□□□□ -1.13
VPS53-217ENST00000575100 RGS3P49796 1198 aa7.97□□□□□ -1.13
VPS53-217ENST00000575100 SMTNP53814 917 aa7.97□□□□□ -1.13
VPS53-217ENST00000575100 CTSWP56202 376 aa7.97□□□□□ -1.13
VPS53-217ENST00000575100 HGSNATQ68CP4 663 aa7.97□□□□□ -1.13
VPS53-217ENST00000575100 OLFM4Q6UX06 510 aa7.97□□□□□ -1.13
VPS53-217ENST00000575100 RSRC2Q7L4I2 434 aaKnown RBP7.97□□□□□ -1.13
VPS53-217ENST00000575100 SLC51AQ86UW1 340 aa7.97□□□□□ -1.13
VPS53-217ENST00000575100 NLRP8Q86W28 1048 aa7.97□□□□□ -1.13
VPS53-217ENST00000575100 CHD1LQ86WJ1 897 aa7.97□□□□□ -1.13
VPS53-217ENST00000575100 CDAN1Q8IWY9 1227 aa7.97□□□□□ -1.13
VPS53-217ENST00000575100 C19orf47Q8N9M1 422 aaKnown RBP7.97□□□□□ -1.13
VPS53-217ENST00000575100 FBXO27Q8NI29 283 aa7.97□□□□□ -1.13
VPS53-217ENST00000575100 COG1Q8WTW3 980 aa7.97□□□□□ -1.13
VPS53-217ENST00000575100 ZBED2Q9BTP6 218 aa7.97□□□□□ -1.13
VPS53-217ENST00000575100 DHRS4Q9BTZ2 278 aa7.97□□□□□ -1.13
VPS53-217ENST00000575100 C1QTNF2Q9BXJ5 285 aa7.97□□□□□ -1.13
VPS53-217ENST00000575100 NYXQ9GZU5 481 aa7.97□□□□□ -1.13
VPS53-217ENST00000575100 UPK3BL1B0FP48 263 aa7.97□□□□□ -1.13
VPS53-217ENST00000575100 UPK3BL2E5RIL1 263 aa7.97□□□□□ -1.13
VPS53-217ENST00000575100 SASH1O94885 1247 aa7.97□□□□□ -1.13
VPS53-217ENST00000575100 POLR3DP05423 398 aaPredicted RBP7.97□□□□□ -1.13
VPS53-217ENST00000575100 L1CAMP32004 1257 aa7.97□□□□□ -1.13
VPS53-217ENST00000575100 TUBB8Q3ZCM7 444 aa7.97□□□□□ -1.13
VPS53-217ENST00000575100 SRLQ86TD4 932 aa7.97□□□□□ -1.13
VPS53-217ENST00000575100 CNTROBQ8N137 903 aa7.97□□□□□ -1.13
VPS53-217ENST00000575100 GIMAP8Q8ND71 665 aaPredicted RBP7.97□□□□□ -1.13
VPS53-217ENST00000575100 FRS2Q8WU20 508 aa7.97□□□□□ -1.13
VPS53-217ENST00000575100 TMEM87BQ96K49 555 aa7.97□□□□□ -1.13
VPS53-217ENST00000575100 PUS3Q9BZE2 481 aaKnown RBP7.97□□□□□ -1.13
VPS53-217ENST00000575100 IL1RAPL2Q9NP60 686 aa7.97□□□□□ -1.13
VPS53-217ENST00000575100 SEC31BQ9NQW1 1179 aa7.97□□□□□ -1.13
VPS53-217ENST00000575100 ANLNQ9NQW6 1124 aa7.97□□□□□ -1.13
VPS53-217ENST00000575100 RASSF1Q9NS23 344 aa7.97□□□□□ -1.13
VPS53-217ENST00000575100 DDX20Q9UHI6 824 aaKnown RBP7.97□□□□□ -1.13
VPS53-217ENST00000575100 FEZ2Q9UHY8 353 aaPredicted RBP7.97□□□□□ -1.13
VPS53-217ENST00000575100 ZBTB21Q9ULJ3 1066 aa7.97□□□□□ -1.13
VPS53-217ENST00000575100 J3KRW8 73 aa7.96□□□□□ -1.14
VPS53-217ENST00000575100 ERC2O15083 957 aa7.96□□□□□ -1.14
VPS53-217ENST00000575100 RNF40O75150 1001 aa7.96□□□□□ -1.14
VPS53-217ENST00000575100 FBXO24O75426 580 aa7.96□□□□□ -1.14
VPS53-217ENST00000575100 NPTXRO95502 500 aa7.96□□□□□ -1.14
VPS53-217ENST00000575100 HSPA8P11142 646 aaKnown RBP7.96□□□□□ -1.14
VPS53-217ENST00000575100 NCAM1P13591 858 aa7.96□□□□□ -1.14
VPS53-217ENST00000575100 POU3F2P20265 443 aaPredicted RBP7.96□□□□□ -1.14
VPS53-217ENST00000575100 DEFB115Q30KQ5 88 aa7.96□□□□□ -1.14
VPS53-217ENST00000575100 LRRC24Q50LG9 513 aa7.96□□□□□ -1.14
VPS53-217ENST00000575100 PTCRAQ6ISU1 281 aaPredicted RBP7.96□□□□□ -1.14
VPS53-217ENST00000575100 PKN3Q6P5Z2 889 aa7.96□□□□□ -1.14
VPS53-217ENST00000575100 FAM186BQ8IYM0 893 aa7.96□□□□□ -1.14
VPS53-217ENST00000575100 TNIP3Q96KP6 325 aa7.96□□□□□ -1.14
VPS53-217ENST00000575100 EIF2AK1Q9BQI3 630 aaKnown RBP7.96□□□□□ -1.14
VPS53-217ENST00000575100 RABGEF1Q9UJ41 708 aa7.96□□□□□ -1.14
VPS53-217ENST00000575100 FRMPD2Q68DX3 1309 aaPredicted RBP7.96□□□□□ -1.14
VPS53-217ENST00000575100 PHACTR2O75167 634 aa7.95□□□□□ -1.14
VPS53-217ENST00000575100 TFE3P19532 575 aaPredicted RBP7.95□□□□□ -1.14
VPS53-217ENST00000575100 ITGA6P23229 1130 aa7.95□□□□□ -1.14
VPS53-217ENST00000575100 MCM4P33991 863 aa7.95□□□□□ -1.14
VPS53-217ENST00000575100 ZNF165P49910 485 aa7.95□□□□□ -1.14
VPS53-217ENST00000575100 SLC10A5Q5PT55 438 aa7.95□□□□□ -1.14
VPS53-217ENST00000575100 LDHAL6AQ6ZMR3 332 aa7.95□□□□□ -1.14
VPS53-217ENST00000575100 OTOP3Q7RTS5 596 aa7.95□□□□□ -1.14
VPS53-217ENST00000575100 ATG9AQ7Z3C6 839 aa7.95□□□□□ -1.14
VPS53-217ENST00000575100 REXO1Q8N1G1 1221 aaKnown RBP7.95□□□□□ -1.14
VPS53-217ENST00000575100 LRRC47Q8N1G4 583 aaKnown RBP7.95□□□□□ -1.14
VPS53-217ENST00000575100 POF1BQ8WVV4 589 aa7.95□□□□□ -1.14
VPS53-217ENST00000575100 CLIP3Q96DZ5 547 aa7.95□□□□□ -1.14
VPS53-217ENST00000575100 CRAMP1Q96RY5 1269 aa7.95□□□□□ -1.14
VPS53-217ENST00000575100 ISY1Q9ULR0 285 aaKnown RBP7.95□□□□□ -1.14
VPS53-217ENST00000575100 WDR33Q9C0J8 1336 aaKnown RBP7.95□□□□□ -1.14
VPS53-217ENST00000575100 TLR3O15455 904 aaKnown RBP7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms