RNA–Protein interactions for RNA: ENST00000570937.1

NUP88-202, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 361 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-202ENST00000570937 ALG3Q92685 438 aa6.12□□□□□ -1.43
NUP88-202ENST00000570937 DACT3Q96B18 629 aaPredicted RBP6.12□□□□□ -1.43
NUP88-202ENST00000570937 CDIP1Q9H305 208 aa6.12□□□□□ -1.43
NUP88-202ENST00000570937 BTG4Q9NY30 223 aa6.12□□□□□ -1.43
NUP88-202ENST00000570937 PFDN2Q9UHV9 154 aa6.12□□□□□ -1.43
NUP88-202ENST00000570937 SGSM2O43147 1006 aa6.11□□□□□ -1.43
NUP88-202ENST00000570937 DIAPH1O60610 1272 aaKnown RBP6.11□□□□□ -1.43
NUP88-202ENST00000570937 MSCO60682 206 aa6.11□□□□□ -1.43
NUP88-202ENST00000570937 ATF2P15336 505 aa6.11□□□□□ -1.43
NUP88-202ENST00000570937 IFRD2Q12894 506 aaPredicted RBP6.11□□□□□ -1.43
NUP88-202ENST00000570937 ZC3H12BQ5HYM0 836 aaKnown RBP6.11□□□□□ -1.43
NUP88-202ENST00000570937 STYK1Q6J9G0 422 aa6.11□□□□□ -1.43
NUP88-202ENST00000570937 DPH6Q7L8W6 267 aa6.11□□□□□ -1.43
NUP88-202ENST00000570937 TMEM151BQ8IW70 566 aa6.11□□□□□ -1.43
NUP88-202ENST00000570937 JMYQ8N9B5 988 aa6.11□□□□□ -1.43
NUP88-202ENST00000570937 DRC1Q96MC2 740 aa6.11□□□□□ -1.43
NUP88-202ENST00000570937 PHF20Q9BVI0 1012 aa6.11□□□□□ -1.43
NUP88-202ENST00000570937 AP5M1Q9H0R1 490 aa6.11□□□□□ -1.43
NUP88-202ENST00000570937 COA3Q9Y2R0 106 aaPredicted RBP6.11□□□□□ -1.43
NUP88-202ENST00000570937 SIT1Q9Y3P8 196 aa6.11□□□□□ -1.43
NUP88-202ENST00000570937 PBRM1Q86U86 1689 aa6.1□□□□□ -1.43
NUP88-202ENST00000570937 KDM2BQ8NHM5 1336 aa6.1□□□□□ -1.43
NUP88-202ENST00000570937 PMLP29590 882 aa6.1□□□□□ -1.43
NUP88-202ENST00000570937 EMC4Q5J8M3 183 aa6.1□□□□□ -1.43
NUP88-202ENST00000570937 CNKSR3Q6P9H4 555 aa6.1□□□□□ -1.43
NUP88-202ENST00000570937 SPOCD1Q6ZMY3 1216 aa6.1□□□□□ -1.43
NUP88-202ENST00000570937 LCNL1Q6ZST4 164 aa6.1□□□□□ -1.43
NUP88-202ENST00000570937 MIB1Q86YT6 1006 aa6.1□□□□□ -1.43
NUP88-202ENST00000570937 PMFBP1Q8TBY8 1022 aa6.1□□□□□ -1.43
NUP88-202ENST00000570937 PANK1Q8TE04 598 aa6.1□□□□□ -1.43
NUP88-202ENST00000570937 SRPK1Q96SB4 655 aaKnown RBP6.1□□□□□ -1.43
NUP88-202ENST00000570937 DNAJC2Q99543 621 aaKnown RBP6.1□□□□□ -1.43
NUP88-202ENST00000570937 IRF2BPLQ9H1B7 796 aa6.1□□□□□ -1.43
NUP88-202ENST00000570937 CLDND1Q9NY35 253 aa6.1□□□□□ -1.43
NUP88-202ENST00000570937 ZNF652Q9Y2D9 606 aa6.1□□□□□ -1.43
NUP88-202ENST00000570937 CHD1O14646 1710 aa6.1□□□□□ -1.43
NUP88-202ENST00000570937 GRIN2AQ12879 1464 aa6.09□□□□□ -1.43
NUP88-202ENST00000570937 TRBV23-1A0A0A0MS06 115 aa6.09□□□□□ -1.43
NUP88-202ENST00000570937 FAM153BP0C7A2 387 aa6.09□□□□□ -1.43
NUP88-202ENST00000570937 ZSCAN22P10073 491 aaPredicted RBP6.09□□□□□ -1.43
NUP88-202ENST00000570937 SUMO1P63165 101 aaKnown RBP6.09□□□□□ -1.43
NUP88-202ENST00000570937 FOXO4P98177 505 aa6.09□□□□□ -1.43
NUP88-202ENST00000570937 CACNB2Q08289 660 aaPredicted RBP6.09□□□□□ -1.43
NUP88-202ENST00000570937 CHRNA2Q15822 529 aa6.09□□□□□ -1.43
NUP88-202ENST00000570937 FOXB2Q5VYV0 432 aa6.09□□□□□ -1.43
NUP88-202ENST00000570937 KCNT2Q6UVM3 1135 aa6.09□□□□□ -1.43
NUP88-202ENST00000570937 LBX2Q6XYB7 198 aa6.09□□□□□ -1.43
NUP88-202ENST00000570937 B3GNT8Q7Z7M8 397 aa6.09□□□□□ -1.43
NUP88-202ENST00000570937 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.09□□□□□ -1.43
NUP88-202ENST00000570937 UBXN4Q92575 508 aa6.09□□□□□ -1.43
NUP88-202ENST00000570937 CHAMP1Q96JM3 812 aa6.09□□□□□ -1.43
NUP88-202ENST00000570937 KRTAP4-11Q9BYQ6 195 aa6.09□□□□□ -1.43
NUP88-202ENST00000570937 OSBPL2Q9H1P3 480 aa6.09□□□□□ -1.43
NUP88-202ENST00000570937 EPB41L1Q9H4G0 881 aa6.09□□□□□ -1.43
NUP88-202ENST00000570937 HGSO14964 777 aaPredicted RBP6.08□□□□□ -1.44
NUP88-202ENST00000570937 TADA3O75528 432 aa6.08□□□□□ -1.44
NUP88-202ENST00000570937 DGKIO75912 1065 aa6.08□□□□□ -1.44
NUP88-202ENST00000570937 C6orf222P0C671 652 aaPredicted RBP6.08□□□□□ -1.44
NUP88-202ENST00000570937 GPR85P60893 370 aa6.08□□□□□ -1.44
NUP88-202ENST00000570937 HTRA3P83110 453 aa6.08□□□□□ -1.44
NUP88-202ENST00000570937 KIZQ2M2Z5 673 aa6.08□□□□□ -1.44
NUP88-202ENST00000570937 FAM209AQ5JX71 171 aa6.08□□□□□ -1.44
NUP88-202ENST00000570937 TCERG1LQ5VWI1 586 aa6.08□□□□□ -1.44
NUP88-202ENST00000570937 CYB5RLQ6IPT4 315 aa6.08□□□□□ -1.44
NUP88-202ENST00000570937 MAMDC2Q7Z304 686 aaPredicted RBP6.08□□□□□ -1.44
NUP88-202ENST00000570937 IFNL3Q8IZI9 196 aa6.08□□□□□ -1.44
NUP88-202ENST00000570937 NLGN1Q8N2Q7 840 aa6.08□□□□□ -1.44
NUP88-202ENST00000570937 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.08□□□□□ -1.44
NUP88-202ENST00000570937 KISS1RQ969F8 398 aaPredicted RBP6.08□□□□□ -1.44
NUP88-202ENST00000570937 EXOC2Q96KP1 924 aa6.08□□□□□ -1.44
NUP88-202ENST00000570937 DNAJC7Q99615 494 aa6.08□□□□□ -1.44
NUP88-202ENST00000570937 CDC6Q99741 560 aa6.08□□□□□ -1.44
NUP88-202ENST00000570937 BCAS3Q9H6U6 928 aa6.08□□□□□ -1.44
NUP88-202ENST00000570937 PALD1Q9ULE6 856 aa6.08□□□□□ -1.44
NUP88-202ENST00000570937 CARMIL1Q5VZK9 1371 aa6.07□□□□□ -1.44
NUP88-202ENST00000570937 ADAMTS12P58397 1594 aa6.07□□□□□ -1.44
NUP88-202ENST00000570937 BLACEA4D250 179 aa6.07□□□□□ -1.44
NUP88-202ENST00000570937 MC3RP41968 323 aa6.07□□□□□ -1.44
NUP88-202ENST00000570937 LIMS1P48059 325 aa6.07□□□□□ -1.44
NUP88-202ENST00000570937 AFF3P51826 1226 aaKnown RBP6.07□□□□□ -1.44
NUP88-202ENST00000570937 NFE2L2Q16236 605 aa6.07□□□□□ -1.44
NUP88-202ENST00000570937 CYP4F22Q6NT55 531 aa6.07□□□□□ -1.44
NUP88-202ENST00000570937 PTPRN2Q92932 1015 aa6.07□□□□□ -1.44
NUP88-202ENST00000570937 PWWP2AQ96N64 755 aa6.07□□□□□ -1.44
NUP88-202ENST00000570937 DHRS4Q9BTZ2 278 aa6.07□□□□□ -1.44
NUP88-202ENST00000570937 FAN1Q9Y2M0 1017 aa6.07□□□□□ -1.44
NUP88-202ENST00000570937 ARHGEF11O15085 1522 aa6.07□□□□□ -1.44
NUP88-202ENST00000570937 NUP160Q12769 1436 aa6.07□□□□□ -1.44
NUP88-202ENST00000570937 ASXL2Q76L83 1435 aa6.07□□□□□ -1.44
NUP88-202ENST00000570937 FBLN7Q53RD9 439 aa6.06□□□□□ -1.44
NUP88-202ENST00000570937 STEAP3Q658P3 488 aa6.06□□□□□ -1.44
NUP88-202ENST00000570937 ETV3LQ6ZN32 361 aa6.06□□□□□ -1.44
NUP88-202ENST00000570937 MILR1Q7Z6M3 343 aa6.06□□□□□ -1.44
NUP88-202ENST00000570937 PHOSPHO1Q8TCT1 267 aa6.06□□□□□ -1.44
NUP88-202ENST00000570937 FNIP1Q8TF40 1166 aa6.06□□□□□ -1.44
NUP88-202ENST00000570937 THAP3Q8WTV1 239 aaPredicted RBP6.06□□□□□ -1.44
NUP88-202ENST00000570937 IPO9Q96P70 1041 aaKnown RBP6.06□□□□□ -1.44
NUP88-202ENST00000570937 PCDH18Q9HCL0 1135 aa6.06□□□□□ -1.44
NUP88-202ENST00000570937 SLC6A20Q9NP91 592 aa6.06□□□□□ -1.44
NUP88-202ENST00000570937 PPARGC1AQ9UBK2 798 aaKnown RBP6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms