RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 ACTN1P12814 892 aa7.03□□□□□ -1.28
VPS53-208ENST00000570650 ALADP13716 330 aa7.03□□□□□ -1.28
VPS53-208ENST00000570650 AKR1B1P15121 316 aa7.03□□□□□ -1.28
VPS53-208ENST00000570650 RHOQP17081 205 aa7.03□□□□□ -1.28
VPS53-208ENST00000570650 BEX3Q00994 111 aa7.03□□□□□ -1.28
VPS53-208ENST00000570650 GRB10Q13322 594 aa7.03□□□□□ -1.28
VPS53-208ENST00000570650 OS9Q13438 667 aaPredicted RBP7.03□□□□□ -1.28
VPS53-208ENST00000570650 SNRNP48Q6IEG0 339 aaKnown RBP7.03□□□□□ -1.28
VPS53-208ENST00000570650 ARMCX2Q7L311 632 aa7.03□□□□□ -1.28
VPS53-208ENST00000570650 LYSMD3Q7Z3D4 306 aa7.03□□□□□ -1.28
VPS53-208ENST00000570650 PRICKLE2Q7Z3G6 844 aa7.03□□□□□ -1.28
VPS53-208ENST00000570650 FAM178BQ8IXR5 827 aa7.03□□□□□ -1.28
VPS53-208ENST00000570650 FAM9BQ8IZU0 186 aa7.03□□□□□ -1.28
VPS53-208ENST00000570650 VWCEQ96DN2 955 aa7.03□□□□□ -1.28
VPS53-208ENST00000570650 SCLYQ96I15 445 aa7.03□□□□□ -1.28
VPS53-208ENST00000570650 FBXL18Q96ME1 805 aa7.03□□□□□ -1.28
VPS53-208ENST00000570650 TRPV6Q9H1D0 765 aa7.03□□□□□ -1.28
VPS53-208ENST00000570650 ETNK1Q9HBU6 452 aa7.03□□□□□ -1.28
VPS53-208ENST00000570650 DBNLQ9UJU6 430 aaKnown RBP7.03□□□□□ -1.28
VPS53-208ENST00000570650 RIPK3Q9Y572 518 aa7.03□□□□□ -1.28
VPS53-208ENST00000570650 GTF3C3Q9Y5Q9 886 aa7.03□□□□□ -1.28
VPS53-208ENST00000570650 CHD9Q3L8U1 2897 aa7.03□□□□□ -1.28
VPS53-208ENST00000570650 GRIN2DO15399 1336 aa7.02□□□□□ -1.28
VPS53-208ENST00000570650 SLC35F4A4IF30 521 aa7.02□□□□□ -1.29
VPS53-208ENST00000570650 LPXNO60711 386 aa7.02□□□□□ -1.29
VPS53-208ENST00000570650 ARHGEF15O94989 841 aa7.02□□□□□ -1.29
VPS53-208ENST00000570650 CT47B1P0C2W7 299 aaPredicted RBP7.02□□□□□ -1.29
VPS53-208ENST00000570650 EEF2P13639 858 aaKnown RBP7.02□□□□□ -1.29
VPS53-208ENST00000570650 GPC1P35052 558 aa7.02□□□□□ -1.29
VPS53-208ENST00000570650 TNFAIP2Q03169 654 aa7.02□□□□□ -1.29
VPS53-208ENST00000570650 SLFN5Q08AF3 891 aa7.02□□□□□ -1.29
VPS53-208ENST00000570650 NCOA4Q13772 614 aa7.02□□□□□ -1.29
VPS53-208ENST00000570650 FSCN1Q16658 493 aaKnown RBP7.02□□□□□ -1.29
VPS53-208ENST00000570650 FAM83BQ5T0W9 1011 aa7.02□□□□□ -1.29
VPS53-208ENST00000570650 NOL8Q76FK4 1167 aaKnown RBP7.02□□□□□ -1.29
VPS53-208ENST00000570650 DEFB128Q7Z7B8 93 aa7.02□□□□□ -1.29
VPS53-208ENST00000570650 TLK2Q86UE8 772 aa7.02□□□□□ -1.29
VPS53-208ENST00000570650 NPAS3Q8IXF0 933 aa7.02□□□□□ -1.29
VPS53-208ENST00000570650 CCDC155Q8N6L0 562 aa7.02□□□□□ -1.29
VPS53-208ENST00000570650 SDR42E1Q8WUS8 393 aa7.02□□□□□ -1.29
VPS53-208ENST00000570650 DYNLL2Q96FJ2 89 aa7.02□□□□□ -1.29
VPS53-208ENST00000570650 FGD4Q96M96 766 aa7.02□□□□□ -1.29
VPS53-208ENST00000570650 SLF1Q9BQI6 1058 aa7.02□□□□□ -1.29
VPS53-208ENST00000570650 ESYT1Q9BSJ8 1104 aa7.02□□□□□ -1.29
VPS53-208ENST00000570650 GRIP2Q9C0E4 1043 aa7.02□□□□□ -1.29
VPS53-208ENST00000570650 KATNBL1Q9H079 304 aa7.02□□□□□ -1.29
VPS53-208ENST00000570650 AP5M1Q9H0R1 490 aa7.02□□□□□ -1.29
VPS53-208ENST00000570650 ANTXR1Q9H6X2 564 aa7.02□□□□□ -1.29
VPS53-208ENST00000570650 UBE2ZQ9H832 354 aaPredicted RBP7.02□□□□□ -1.29
VPS53-208ENST00000570650 KANSL2Q9H9L4 492 aa7.02□□□□□ -1.29
VPS53-208ENST00000570650 DCP1AQ9NPI6 582 aaPredicted RBP7.02□□□□□ -1.29
VPS53-208ENST00000570650 TLR7Q9NYK1 1049 aaKnown RBP7.02□□□□□ -1.29
VPS53-208ENST00000570650 LMCD1Q9NZU5 365 aa7.02□□□□□ -1.29
VPS53-208ENST00000570650 GNEQ9Y223 722 aaKnown RBP7.02□□□□□ -1.29
VPS53-208ENST00000570650 HRH3Q9Y5N1 445 aa7.02□□□□□ -1.29
VPS53-208ENST00000570650 MCM3APO60318 1980 aa7.02□□□□□ -1.29
VPS53-208ENST00000570650 ASTN1O14525 1302 aa7.01□□□□□ -1.29
VPS53-208ENST00000570650 C11orf97A0A1B0GVM6 126 aaPredicted RBP7.01□□□□□ -1.29
VPS53-208ENST00000570650 ATP2A1O14983 1001 aa7.01□□□□□ -1.29
VPS53-208ENST00000570650 SUPT20HL2P0C7V6 817 aa7.01□□□□□ -1.29
VPS53-208ENST00000570650 CYP2D6P10635 497 aa7.01□□□□□ -1.29
VPS53-208ENST00000570650 RFC2P35250 354 aa7.01□□□□□ -1.29
VPS53-208ENST00000570650 PSMC6P62333 389 aa7.01□□□□□ -1.29
VPS53-208ENST00000570650 EML3Q32P44 896 aa7.01□□□□□ -1.29
VPS53-208ENST00000570650 LEXMQ3ZCV2 418 aa7.01□□□□□ -1.29
VPS53-208ENST00000570650 HERC6Q8IVU3 1022 aa7.01□□□□□ -1.29
VPS53-208ENST00000570650 CCDC144CPQ8IYA2 1237 aa7.01□□□□□ -1.29
VPS53-208ENST00000570650 CPXCR1Q8N123 301 aa7.01□□□□□ -1.29
VPS53-208ENST00000570650 ANKRD35Q8N283 1001 aa7.01□□□□□ -1.29
VPS53-208ENST00000570650 CHST13Q8NET6 341 aa7.01□□□□□ -1.29
VPS53-208ENST00000570650 ARHGAP45Q92619 1136 aa7.01□□□□□ -1.29
VPS53-208ENST00000570650 CCDC8Q9H0W5 538 aaPredicted RBP7.01□□□□□ -1.29
VPS53-208ENST00000570650 ALDH8A1Q9H2A2 487 aaPredicted RBP7.01□□□□□ -1.29
VPS53-208ENST00000570650 FBXO40Q9UH90 709 aa7.01□□□□□ -1.29
VPS53-208ENST00000570650 CTDP1Q9Y5B0 961 aaPredicted RBP7.01□□□□□ -1.29
VPS53-208ENST00000570650 PCDHGA11Q9Y5H2 935 aa7.01□□□□□ -1.29
VPS53-208ENST00000570650 BRWD1Q9NSI6 2320 aa7.01□□□□□ -1.29
VPS53-208ENST00000570650 MYH8P13535 1937 aa7.01□□□□□ -1.29
VPS53-208ENST00000570650 REV3LO60673 3130 aa7.01□□□□□ -1.29
VPS53-208ENST00000570650 ZNF536O15090 1300 aa7.01□□□□□ -1.29
VPS53-208ENST00000570650 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP7□□□□□ -1.29
VPS53-208ENST00000570650 DYNC1LI2O43237 492 aaPredicted RBP7□□□□□ -1.29
VPS53-208ENST00000570650 ANP32CO43423 234 aa7□□□□□ -1.29
VPS53-208ENST00000570650 DCXO43602 365 aa7□□□□□ -1.29
VPS53-208ENST00000570650 ATP9BO43861 1147 aa7□□□□□ -1.29
VPS53-208ENST00000570650 ZBED4O75132 1171 aa7□□□□□ -1.29
VPS53-208ENST00000570650 SURF6O75683 361 aaKnown RBP7□□□□□ -1.29
VPS53-208ENST00000570650 CYP2C9P11712 490 aa7□□□□□ -1.29
VPS53-208ENST00000570650 IL9P15248 144 aa7□□□□□ -1.29
VPS53-208ENST00000570650 PDE6AP16499 860 aa7□□□□□ -1.29
VPS53-208ENST00000570650 KCNA5P22460 613 aa7□□□□□ -1.29
VPS53-208ENST00000570650 CDK8P49336 464 aa7□□□□□ -1.29
VPS53-208ENST00000570650 CENPCQ03188 943 aa7□□□□□ -1.29
VPS53-208ENST00000570650 POU4F2Q12837 409 aa7□□□□□ -1.29
VPS53-208ENST00000570650 TTF1Q15361 905 aaPredicted RBP7□□□□□ -1.29
VPS53-208ENST00000570650 AMOTL1Q8IY63 956 aa7□□□□□ -1.29
VPS53-208ENST00000570650 PRPF38AQ8NAV1 312 aaKnown RBP7□□□□□ -1.29
VPS53-208ENST00000570650 GADD45GIP1Q8TAE8 222 aaPredicted RBP7□□□□□ -1.29
VPS53-208ENST00000570650 GDPD5Q8WTR4 605 aa7□□□□□ -1.29
VPS53-208ENST00000570650 NUP88Q99567 741 aaPredicted RBP7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms