RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 GTF3C2Q8WUA4 911 aaPredicted RBP8.98□□□□□ -0.97
VPS39-213ENST00000570062 CDK5RAP3Q96JB5 506 aa8.98□□□□□ -0.97
VPS39-213ENST00000570062 PPP1R9BQ96SB3 815 aa8.98□□□□□ -0.97
VPS39-213ENST00000570062 NUP88Q99567 741 aaPredicted RBP8.98□□□□□ -0.97
VPS39-213ENST00000570062 ANO3Q9BYT9 981 aa8.98□□□□□ -0.97
VPS39-213ENST00000570062 TANGO6Q9C0B7 1094 aa8.98□□□□□ -0.97
VPS39-213ENST00000570062 STK17AQ9UEE5 414 aa8.98□□□□□ -0.97
VPS39-213ENST00000570062 LRWD1Q9UFC0 647 aa8.98□□□□□ -0.97
VPS39-213ENST00000570062 CCPG1Q9ULG6 757 aa8.98□□□□□ -0.97
VPS39-213ENST00000570062 PCDHA12Q9UN75 941 aa8.98□□□□□ -0.97
VPS39-213ENST00000570062 AFG3L2Q9Y4W6 797 aa8.98□□□□□ -0.97
VPS39-213ENST00000570062 MRVI1Q9Y6F6 885 aa8.98□□□□□ -0.97
VPS39-213ENST00000570062 KDM3AQ9Y4C1 1321 aa8.98□□□□□ -0.97
VPS39-213ENST00000570062 B4DLN1 442 aa8.97□□□□□ -0.97
VPS39-213ENST00000570062 IKBKBO14920 756 aa8.97□□□□□ -0.97
VPS39-213ENST00000570062 SLURP2P0DP57 97 aa8.97□□□□□ -0.97
VPS39-213ENST00000570062 VCAM1P19320 739 aa8.97□□□□□ -0.97
VPS39-213ENST00000570062 MTMR2Q13614 643 aa8.97□□□□□ -0.97
VPS39-213ENST00000570062 ZYXQ15942 572 aaKnown RBP8.97□□□□□ -0.97
VPS39-213ENST00000570062 ANO6Q4KMQ2 910 aa8.97□□□□□ -0.97
VPS39-213ENST00000570062 CATSPERGQ6ZRH7 1159 aa8.97□□□□□ -0.97
VPS39-213ENST00000570062 FASTKD5Q7L8L6 764 aaKnown RBP8.97□□□□□ -0.97
VPS39-213ENST00000570062 SH3RF1Q7Z6J0 888 aa8.97□□□□□ -0.97
VPS39-213ENST00000570062 CABP7Q86V35 215 aa8.97□□□□□ -0.97
VPS39-213ENST00000570062 SPATA20Q8TB22 786 aa8.97□□□□□ -0.97
VPS39-213ENST00000570062 TAF1DQ9H5J8 278 aaPredicted RBP8.97□□□□□ -0.97
VPS39-213ENST00000570062 RPAP3Q9H6T3 665 aaPredicted RBP8.97□□□□□ -0.97
VPS39-213ENST00000570062 DISC1Q9NRI5 854 aa8.97□□□□□ -0.97
VPS39-213ENST00000570062 FBXO40Q9UH90 709 aa8.97□□□□□ -0.97
VPS39-213ENST00000570062 ADAMTS5Q9UNA0 930 aa8.97□□□□□ -0.97
VPS39-213ENST00000570062 ADAMTSL1Q8N6G6 1762 aa8.96□□□□□ -0.97
VPS39-213ENST00000570062 SIPA1L1O43166 1804 aa8.96□□□□□ -0.97
VPS39-213ENST00000570062 MAFGO15525 162 aa8.96□□□□□ -0.98
VPS39-213ENST00000570062 ACTN4O43707 911 aaKnown RBP8.96□□□□□ -0.98
VPS39-213ENST00000570062 STAM2O75886 525 aa8.96□□□□□ -0.98
VPS39-213ENST00000570062 CFBP00751 764 aa8.96□□□□□ -0.98
VPS39-213ENST00000570062 BCRP11274 1271 aa8.96□□□□□ -0.98
VPS39-213ENST00000570062 PRKCSHP14314 528 aaPredicted RBP8.96□□□□□ -0.98
VPS39-213ENST00000570062 ERCC5P28715 1186 aaPredicted RBP8.96□□□□□ -0.98
VPS39-213ENST00000570062 TXKP42681 527 aa8.96□□□□□ -0.98
VPS39-213ENST00000570062 SARSP49591 514 aaKnown RBP8.96□□□□□ -0.98
VPS39-213ENST00000570062 HSD17B4P51659 736 aa8.96□□□□□ -0.98
VPS39-213ENST00000570062 MDM2Q00987 491 aaPredicted RBP8.96□□□□□ -0.98
VPS39-213ENST00000570062 STIM1Q13586 685 aa8.96□□□□□ -0.98
VPS39-213ENST00000570062 SHROOM1Q2M3G4 852 aaPredicted RBP8.96□□□□□ -0.98
VPS39-213ENST00000570062 USH1GQ495M9 461 aa8.96□□□□□ -0.98
VPS39-213ENST00000570062 CCDC174Q6PII3 467 aa8.96□□□□□ -0.98
VPS39-213ENST00000570062 RASGRP2Q7LDG7 609 aa8.96□□□□□ -0.98
VPS39-213ENST00000570062 CRYGNQ8WXF5 182 aa8.96□□□□□ -0.98
VPS39-213ENST00000570062 ZKSCAN4Q969J2 545 aaPredicted RBP8.96□□□□□ -0.98
VPS39-213ENST00000570062 DHX58Q96C10 678 aa8.96□□□□□ -0.98
VPS39-213ENST00000570062 CDCA5Q96FF9 252 aa8.96□□□□□ -0.98
VPS39-213ENST00000570062 PAGE5Q96GU1 130 aa8.96□□□□□ -0.98
VPS39-213ENST00000570062 EPSTI1Q96J88 318 aa8.96□□□□□ -0.98
VPS39-213ENST00000570062 MPHOSPH6Q99547 160 aaKnown RBP8.96□□□□□ -0.98
VPS39-213ENST00000570062 TMUB1Q9BVT8 246 aa8.96□□□□□ -0.98
VPS39-213ENST00000570062 PRR14Q9BWN1 585 aa8.96□□□□□ -0.98
VPS39-213ENST00000570062 WDR11Q9BZH6 1224 aa8.96□□□□□ -0.98
VPS39-213ENST00000570062 TTC12Q9H892 705 aaPredicted RBP8.96□□□□□ -0.98
VPS39-213ENST00000570062 TMEM260Q9NX78 707 aa8.96□□□□□ -0.98
VPS39-213ENST00000570062 SERTAD1Q9UHV2 236 aa8.96□□□□□ -0.98
VPS39-213ENST00000570062 ASTN2O75129 1339 aaPredicted RBP8.96□□□□□ -0.98
VPS39-213ENST00000570062 MYH8P13535 1937 aa8.95□□□□□ -0.98
VPS39-213ENST00000570062 SPDYE5A6NIY4 337 aa8.95□□□□□ -0.98
VPS39-213ENST00000570062 VWA5AO00534 786 aa8.95□□□□□ -0.98
VPS39-213ENST00000570062 TECP42680 631 aa8.95□□□□□ -0.98
VPS39-213ENST00000570062 PPIL2Q13356 520 aa8.95□□□□□ -0.98
VPS39-213ENST00000570062 VGLL4Q14135 290 aa8.95□□□□□ -0.98
VPS39-213ENST00000570062 KCNB1Q14721 858 aa8.95□□□□□ -0.98
VPS39-213ENST00000570062 UBE2SQ16763 222 aa8.95□□□□□ -0.98
VPS39-213ENST00000570062 KIAA1755Q5JYT7 1200 aa8.95□□□□□ -0.98
VPS39-213ENST00000570062 HYIQ5T013 277 aa8.95□□□□□ -0.98
VPS39-213ENST00000570062 CNNM4Q6P4Q7 775 aa8.95□□□□□ -0.98
VPS39-213ENST00000570062 USP17L6PQ6QN14 398 aa8.95□□□□□ -0.98
VPS39-213ENST00000570062 SV2BQ7L1I2 683 aa8.95□□□□□ -0.98
VPS39-213ENST00000570062 ARHGAP30Q7Z6I6 1101 aaPredicted RBP8.95□□□□□ -0.98
VPS39-213ENST00000570062 PDILTQ8N807 584 aa8.95□□□□□ -0.98
VPS39-213ENST00000570062 RNF214Q8ND24 703 aa8.95□□□□□ -0.98
VPS39-213ENST00000570062 CHST13Q8NET6 341 aa8.95□□□□□ -0.98
VPS39-213ENST00000570062 NEK9Q8TD19 979 aa8.95□□□□□ -0.98
VPS39-213ENST00000570062 CDHR1Q96JP9 859 aa8.95□□□□□ -0.98
VPS39-213ENST00000570062 TEX13BQ9BXU2 312 aa8.95□□□□□ -0.98
VPS39-213ENST00000570062 TMEM60Q9H2L4 133 aa8.95□□□□□ -0.98
VPS39-213ENST00000570062 CBX8Q9HC52 389 aa8.95□□□□□ -0.98
VPS39-213ENST00000570062 KCNMB3Q9NPA1 279 aa8.95□□□□□ -0.98
VPS39-213ENST00000570062 PCDHA5Q9Y5H7 936 aa8.95□□□□□ -0.98
VPS39-213ENST00000570062 DICER1Q9UPY3 1922 aaKnown RBP8.94□□□□□ -0.98
VPS39-213ENST00000570062 PVALEFA0A1B0GWK0 134 aa8.94□□□□□ -0.98
VPS39-213ENST00000570062 KIF20AO95235 890 aa8.94□□□□□ -0.98
VPS39-213ENST00000570062 SLC25A27O95847 323 aa8.94□□□□□ -0.98
VPS39-213ENST00000570062 MLLT3P42568 568 aaPredicted RBP8.94□□□□□ -0.98
VPS39-213ENST00000570062 MYL5Q02045 173 aa8.94□□□□□ -0.98
VPS39-213ENST00000570062 GRIN1Q05586 938 aa8.94□□□□□ -0.98
VPS39-213ENST00000570062 PSMD2Q13200 908 aa8.94□□□□□ -0.98
VPS39-213ENST00000570062 TTLL12Q14166 644 aaPredicted RBP8.94□□□□□ -0.98
VPS39-213ENST00000570062 CEP55Q53EZ4 464 aa8.94□□□□□ -0.98
VPS39-213ENST00000570062 NOM1Q5C9Z4 860 aaKnown RBP8.94□□□□□ -0.98
VPS39-213ENST00000570062 SPECC1Q5M775 1068 aa8.94□□□□□ -0.98
VPS39-213ENST00000570062 PDXDC2PQ6P474 469 aa8.94□□□□□ -0.98
VPS39-213ENST00000570062 SARM1Q6SZW1 724 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms