RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, human

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-238	ENST00000569430	PARP9	Q8IXQ6	854 aa		12.48	□□□□□ -0.41
CLN3-238	ENST00000569430	HVCN1	Q96D96	273 aa		12.48	□□□□□ -0.41
CLN3-238	ENST00000569430	NAP1L3	Q99457	506 aa	Predicted RBP	12.48	□□□□□ -0.41
CLN3-238	ENST00000569430	SH2D4A	Q9H788	454 aa		12.48	□□□□□ -0.41
CLN3-238	ENST00000569430	PCDHA12	Q9UN75	941 aa		12.48	□□□□□ -0.41
CLN3-238	ENST00000569430	ATP6V0A2	Q9Y487	856 aa		12.48	□□□□□ -0.41
CLN3-238	ENST00000569430	COL4A3BP	Q9Y5P4	624 aa		12.48	□□□□□ -0.41
CLN3-238	ENST00000569430	DAPK3	O43293	454 aa		12.48	□□□□□ -0.41
CLN3-238	ENST00000569430	RPL13	P26373	211 aa	Known RBP	12.48	□□□□□ -0.41
CLN3-238	ENST00000569430	PRPH	P41219	470 aa		12.48	□□□□□ -0.41
CLN3-238	ENST00000569430	GLE1	Q53GS7	698 aa	Known RBP	12.48	□□□□□ -0.41
CLN3-238	ENST00000569430	FAM83B	Q5T0W9	1011 aa		12.48	□□□□□ -0.41
CLN3-238	ENST00000569430	USP17L2	Q6R6M4	530 aa		12.48	□□□□□ -0.41
CLN3-238	ENST00000569430	KLHL29	Q96CT2	875 aa		12.48	□□□□□ -0.41
CLN3-238	ENST00000569430	TMEM60	Q9H2L4	133 aa		12.48	□□□□□ -0.41
CLN3-238	ENST00000569430	MLXIPL	Q9NP71	852 aa		12.48	□□□□□ -0.41
CLN3-238	ENST00000569430	AMACR	Q9UHK6	382 aa		12.48	□□□□□ -0.41
CLN3-238	ENST00000569430	FBXL5	Q9UKA1	691 aa		12.48	□□□□□ -0.41
CLN3-238	ENST00000569430	MTUS1	Q9ULD2	1270 aa		12.48	□□□□□ -0.41
CLN3-238	ENST00000569430	PTPN22	Q9Y2R2	807 aa		12.48	□□□□□ -0.41
CLN3-238	ENST00000569430	FAM13A	O94988	1023 aa		12.48	□□□□□ -0.41
CLN3-238	ENST00000569430	ADAMTS2	O95450	1211 aa		12.48	□□□□□ -0.41
CLN3-238	ENST00000569430	SERPING1	P05155	500 aa		12.48	□□□□□ -0.41
CLN3-238	ENST00000569430	STAT1	P42224	750 aa		12.48	□□□□□ -0.41
CLN3-238	ENST00000569430	ADCY7	P51828	1080 aa		12.48	□□□□□ -0.41
CLN3-238	ENST00000569430	PFKFB3	Q16875	520 aa	Predicted RBP	12.48	□□□□□ -0.41
CLN3-238	ENST00000569430	SEL1L2	Q5TEA6	688 aa		12.48	□□□□□ -0.41
CLN3-238	ENST00000569430	NT5DC1	Q5TFE4	455 aa		12.48	□□□□□ -0.41
CLN3-238	ENST00000569430	ALKBH5	Q6P6C2	394 aa	Known RBP	12.48	□□□□□ -0.41
CLN3-238	ENST00000569430	OTUD6A	Q7L8S5	288 aa		12.48	□□□□□ -0.41
CLN3-238	ENST00000569430	CCDC77	Q9BR77	488 aa		12.48	□□□□□ -0.41
CLN3-238	ENST00000569430	POTEM	A6NI47	508 aa		12.47	□□□□□ -0.41
CLN3-238	ENST00000569430	GCNT3	O95395	438 aa		12.47	□□□□□ -0.41
CLN3-238	ENST00000569430	NR2F2	P24468	414 aa		12.47	□□□□□ -0.41
CLN3-238	ENST00000569430	EXOC3L4	Q17RC7	722 aa		12.47	□□□□□ -0.41
CLN3-238	ENST00000569430	GSTA5	Q7RTV2	222 aa		12.47	□□□□□ -0.41
CLN3-238	ENST00000569430	STAG2	Q8N3U4	1231 aa		12.47	□□□□□ -0.41
CLN3-238	ENST00000569430	GJA10	Q969M2	543 aa		12.47	□□□□□ -0.41
CLN3-238	ENST00000569430	KIAA1024	Q9UPX6	916 aa		12.47	□□□□□ -0.41
CLN3-238	ENST00000569430	DAAM1	Q9Y4D1	1078 aa		12.47	□□□□□ -0.41
CLN3-238	ENST00000569430	CCDC169	A6NNP5	214 aa		12.47	□□□□□ -0.41
CLN3-238	ENST00000569430	ELF1	P32519	619 aa		12.47	□□□□□ -0.41
CLN3-238	ENST00000569430	TAOK1	Q7L7X3	1001 aa		12.47	□□□□□ -0.41
CLN3-238	ENST00000569430	ELOA2	Q8IYF1	753 aa	Predicted RBP	12.47	□□□□□ -0.41
CLN3-238	ENST00000569430	SYCE1	Q8N0S2	351 aa		12.47	□□□□□ -0.41
CLN3-238	ENST00000569430	MARCH10	Q8NA82	808 aa	Predicted RBP	12.47	□□□□□ -0.41
CLN3-238	ENST00000569430	TSEN2	Q8NCE0	465 aa	Known RBP	12.47	□□□□□ -0.41
CLN3-238	ENST00000569430	FMO2	Q99518	471 aa		12.47	□□□□□ -0.41
CLN3-238	ENST00000569430	TRIM9	Q9C026	710 aa		12.47	□□□□□ -0.41
CLN3-238	ENST00000569430	TRIM7	Q9C029	511 aa		12.47	□□□□□ -0.41
CLN3-238	ENST00000569430	CUEDC2	Q9H467	287 aa		12.47	□□□□□ -0.41
CLN3-238	ENST00000569430	RGPD1	P0DJD0	1748 aa		12.47	□□□□□ -0.41
CLN3-238	ENST00000569430	CHMP2A	O43633	222 aa		12.47	□□□□□ -0.41
CLN3-238	ENST00000569430	STX2	P32856	288 aa		12.47	□□□□□ -0.41
CLN3-238	ENST00000569430	MRPL12	P52815	198 aa	Known RBP	12.47	□□□□□ -0.41
CLN3-238	ENST00000569430	MAEA	Q7L5Y9	396 aa		12.47	□□□□□ -0.41
CLN3-238	ENST00000569430	MMGT1	Q8N4V1	131 aa		12.47	□□□□□ -0.41
CLN3-238	ENST00000569430	COA7	Q96BR5	231 aa		12.47	□□□□□ -0.41
CLN3-238	ENST00000569430	TAF1D	Q9H5J8	278 aa	Predicted RBP	12.47	□□□□□ -0.41
CLN3-238	ENST00000569430	SLTM	Q9NWH9	1034 aa	Known RBP eCLIP	12.47	□□□□□ -0.41
CLN3-238	ENST00000569430	SNX24	Q9Y343	169 aa		12.47	□□□□□ -0.41
CLN3-238	ENST00000569430	RCCD1	A6NED2	376 aa		12.46	□□□□□ -0.41
CLN3-238	ENST00000569430	FGG	P02679	453 aa		12.46	□□□□□ -0.41
CLN3-238	ENST00000569430	CASP7	P55210	303 aa		12.46	□□□□□ -0.41
CLN3-238	ENST00000569430	PPP2R2A	P63151	447 aa		12.46	□□□□□ -0.41
CLN3-238	ENST00000569430	FBXL16	Q8N461	479 aa		12.46	□□□□□ -0.41
CLN3-238	ENST00000569430	MYCBPAP	Q8TBZ2	947 aa		12.46	□□□□□ -0.41
CLN3-238	ENST00000569430	ZNF526	Q8TF50	670 aa	Predicted RBP	12.46	□□□□□ -0.41
CLN3-238	ENST00000569430	EYA3	Q99504	573 aa		12.46	□□□□□ -0.41
CLN3-238	ENST00000569430	SLC40A1	Q9NP59	571 aa		12.46	□□□□□ -0.41
CLN3-238	ENST00000569430	ARPP21	Q9UBL0	812 aa	Predicted RBP	12.46	□□□□□ -0.41
CLN3-238	ENST00000569430	CTDP1	Q9Y5B0	961 aa	Predicted RBP	12.46	□□□□□ -0.41
CLN3-238	ENST00000569430	GLI1	P08151	1106 aa		12.46	□□□□□ -0.41
CLN3-238	ENST00000569430	MME	P08473	750 aa		12.46	□□□□□ -0.41
CLN3-238	ENST00000569430	CETN2	P41208	172 aa		12.46	□□□□□ -0.41
CLN3-238	ENST00000569430	PTGIS	Q16647	500 aa		12.46	□□□□□ -0.41
CLN3-238	ENST00000569430	CCDC13	Q8IYE1	715 aa		12.46	□□□□□ -0.41
CLN3-238	ENST00000569430	DNAJC7	Q99615	494 aa		12.46	□□□□□ -0.41
CLN3-238	ENST00000569430	TRIM6	Q9C030	488 aa	Predicted RBP	12.46	□□□□□ -0.41
CLN3-238	ENST00000569430	HOMER3	Q9NSC5	361 aa		12.46	□□□□□ -0.41
CLN3-238	ENST00000569430	DNAJC17	Q9NVM6	304 aa	Known RBP	12.46	□□□□□ -0.41
CLN3-238	ENST00000569430	SMIM22	K7EJ46	135 aa		12.46	□□□□□ -0.42
CLN3-238	ENST00000569430	RAD51C	O43502	376 aa		12.46	□□□□□ -0.42
CLN3-238	ENST00000569430	HIP1R	O75146	1068 aa		12.46	□□□□□ -0.42
CLN3-238	ENST00000569430	MYL1	P05976	194 aa		12.46	□□□□□ -0.42
CLN3-238	ENST00000569430	AARS	P49588	968 aa	Known RBP eCLIP	12.46	□□□□□ -0.42
CLN3-238	ENST00000569430	SESN3	P58005	492 aa		12.46	□□□□□ -0.42
CLN3-238	ENST00000569430	PLCB3	Q01970	1234 aa		12.46	□□□□□ -0.42
CLN3-238	ENST00000569430	DDX12P	Q92771	950 aa		12.46	□□□□□ -0.42
CLN3-238	ENST00000569430	CYFIP2	Q96F07	1278 aa		12.46	□□□□□ -0.42
CLN3-238	ENST00000569430	AK8	Q96MA6	479 aa		12.46	□□□□□ -0.42
CLN3-238	ENST00000569430	PLVAP	Q9BX97	442 aa		12.46	□□□□□ -0.42
CLN3-238	ENST00000569430	YY1AP1	Q9H869	796 aa		12.46	□□□□□ -0.42
CLN3-238	ENST00000569430	PLCB1	Q9NQ66	1216 aa		12.46	□□□□□ -0.42
CLN3-238	ENST00000569430	GFPT2	O94808	682 aa		12.45	□□□□□ -0.42
CLN3-238	ENST00000569430	FAM153B	P0C7A2	387 aa		12.45	□□□□□ -0.42
CLN3-238	ENST00000569430	EEF2	P13639	858 aa	Known RBP	12.45	□□□□□ -0.42
CLN3-238	ENST00000569430	CYP4A11	Q02928	519 aa		12.45	□□□□□ -0.42
CLN3-238	ENST00000569430	FAM153C	Q494X1	144 aa		12.45	□□□□□ -0.42
CLN3-238	ENST00000569430	LRRC47	Q8N1G4	583 aa	Known RBP	12.45	□□□□□ -0.42

Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms