RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 PTCRAQ6ISU1 281 aaPredicted RBP16.08■□□□□ 0.16
CLN3-235ENST00000568497 APOA5Q6Q788 366 aa16.08■□□□□ 0.16
CLN3-235ENST00000568497 CHST13Q8NET6 341 aa16.08■□□□□ 0.16
CLN3-235ENST00000568497 PHOSPHO2Q8TCD6 241 aa16.08■□□□□ 0.16
CLN3-235ENST00000568497 FTOQ9C0B1 505 aaKnown RBP eCLIP16.08■□□□□ 0.16
CLN3-235ENST00000568497 FAM217BQ9NTX9 383 aaPredicted RBP16.08■□□□□ 0.16
CLN3-235ENST00000568497 COL20A1Q9P218 1284 aa16.08■□□□□ 0.16
CLN3-235ENST00000568497 MTUS1Q9ULD2 1270 aa16.08■□□□□ 0.16
CLN3-235ENST00000568497 GOLGA8AA7E2F4 631 aa16.07■□□□□ 0.16
CLN3-235ENST00000568497 GOLGA8BA8MQT2 603 aa16.07■□□□□ 0.16
CLN3-235ENST00000568497 DDAH1O94760 285 aa16.07■□□□□ 0.16
CLN3-235ENST00000568497 CCT2P78371 535 aaKnown RBP16.07■□□□□ 0.16
CLN3-235ENST00000568497 TOB2Q14106 344 aaPredicted RBP16.07■□□□□ 0.16
CLN3-235ENST00000568497 LEXMQ3ZCV2 418 aa16.07■□□□□ 0.16
CLN3-235ENST00000568497 FBXO11Q86XK2 927 aa16.07■□□□□ 0.16
CLN3-235ENST00000568497 CTCFLQ8NI51 663 aaPredicted RBP16.07■□□□□ 0.16
CLN3-235ENST00000568497 ALDH8A1Q9H2A2 487 aaPredicted RBP16.07■□□□□ 0.16
CLN3-235ENST00000568497 NCOA5Q9HCD5 579 aaKnown RBP16.07■□□□□ 0.16
CLN3-235ENST00000568497 TRMT13Q9NUP7 481 aaKnown RBP16.07■□□□□ 0.16
CLN3-235ENST00000568497 CYP39A1Q9NYL5 469 aa16.07■□□□□ 0.16
CLN3-235ENST00000568497 LMCD1Q9NZU5 365 aa16.07■□□□□ 0.16
CLN3-235ENST00000568497 GNEQ9Y223 722 aaKnown RBP16.07■□□□□ 0.16
CLN3-235ENST00000568497 OPLAHO14841 1288 aa16.06■□□□□ 0.16
CLN3-235ENST00000568497 DYNC1LI2O43237 492 aaPredicted RBP16.06■□□□□ 0.16
CLN3-235ENST00000568497 ZBTB43O43298 467 aa16.06■□□□□ 0.16
CLN3-235ENST00000568497 SUPT20HL2P0C7V6 817 aa16.06■□□□□ 0.16
CLN3-235ENST00000568497 HOXA13P31271 388 aaPredicted RBP16.06■□□□□ 0.16
CLN3-235ENST00000568497 ADD1P35611 737 aaKnown RBP16.06■□□□□ 0.16
CLN3-235ENST00000568497 LIFRP42702 1097 aa16.06■□□□□ 0.16
CLN3-235ENST00000568497 STK3Q13188 491 aa16.06■□□□□ 0.16
CLN3-235ENST00000568497 FAM133AQ8N9E0 248 aa16.06■□□□□ 0.16
CLN3-235ENST00000568497 FANCBQ8NB91 859 aa16.06■□□□□ 0.16
CLN3-235ENST00000568497 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.06■□□□□ 0.16
CLN3-235ENST00000568497 GPKOWQ92917 476 aaPredicted RBP eCLIP16.06■□□□□ 0.16
CLN3-235ENST00000568497 ZBED2Q9BTP6 218 aa16.06■□□□□ 0.16
CLN3-235ENST00000568497 RIOX1Q9H6W3 641 aa16.06■□□□□ 0.16
CLN3-235ENST00000568497 ZSWIM6Q9HCJ5 1215 aa16.06■□□□□ 0.16
CLN3-235ENST00000568497 FBXO40Q9UH90 709 aa16.06■□□□□ 0.16
CLN3-235ENST00000568497 WDFY4Q6ZS81 3184 aa16.06■□□□□ 0.16
CLN3-235ENST00000568497 KCNJ6P48051 423 aa16.05■□□□□ 0.16
CLN3-235ENST00000568497 NT5C2P49902 561 aa16.05■□□□□ 0.16
CLN3-235ENST00000568497 RTN1Q16799 776 aa16.05■□□□□ 0.16
CLN3-235ENST00000568497 FAM47CQ5HY64 1035 aa16.05■□□□□ 0.16
CLN3-235ENST00000568497 TMTC3Q6ZXV5 915 aa16.05■□□□□ 0.16
CLN3-235ENST00000568497 RUFY3Q7L099 469 aa16.05■□□□□ 0.16
CLN3-235ENST00000568497 SGMS1Q86VZ5 419 aa16.05■□□□□ 0.16
CLN3-235ENST00000568497 MTMR8Q96EF0 704 aa16.05■□□□□ 0.16
CLN3-235ENST00000568497 PHOX2BQ99453 314 aa16.05■□□□□ 0.16
CLN3-235ENST00000568497 PDGFCQ9NRA1 345 aa16.05■□□□□ 0.16
CLN3-235ENST00000568497 LCHNA4D1U4 455 aa16.04■□□□□ 0.16
CLN3-235ENST00000568497 RBAK-RBAKDNI3L0D1 243 aa16.04■□□□□ 0.16
CLN3-235ENST00000568497 ZBTB5O15062 677 aa16.04■□□□□ 0.16
CLN3-235ENST00000568497 ADAMTS3O15072 1205 aa16.04■□□□□ 0.16
CLN3-235ENST00000568497 ST18O60284 1047 aa16.04■□□□□ 0.16
CLN3-235ENST00000568497 FDX1P10109 184 aa16.04■□□□□ 0.16
CLN3-235ENST00000568497 RPS6P62753 249 aaKnown RBP16.04■□□□□ 0.16
CLN3-235ENST00000568497 RNF207Q6ZRF8 634 aa16.04■□□□□ 0.16
CLN3-235ENST00000568497 HFE2Q6ZVN8 426 aa16.04■□□□□ 0.16
CLN3-235ENST00000568497 FBXO16Q8IX29 292 aaPredicted RBP16.04■□□□□ 0.16
CLN3-235ENST00000568497 TAAR1Q96RJ0 339 aa16.04■□□□□ 0.16
CLN3-235ENST00000568497 PDRG1Q9NUG6 133 aa16.04■□□□□ 0.16
CLN3-235ENST00000568497 PCDHA1Q9Y5I3 950 aa16.04■□□□□ 0.16
CLN3-235ENST00000568497 CNTNAP5Q8WYK1 1306 aa16.03■□□□□ 0.16
CLN3-235ENST00000568497 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.03■□□□□ 0.16
CLN3-235ENST00000568497 LARGE1O95461 756 aa16.03■□□□□ 0.16
CLN3-235ENST00000568497 CFBP00751 764 aa16.03■□□□□ 0.16
CLN3-235ENST00000568497 RFC2P35250 354 aa16.03■□□□□ 0.16
CLN3-235ENST00000568497 TKFCQ3LXA3 575 aa16.03■□□□□ 0.16
CLN3-235ENST00000568497 SYNE3Q6ZMZ3 975 aa16.03■□□□□ 0.16
CLN3-235ENST00000568497 RETREG2Q8NC44 543 aa16.03■□□□□ 0.16
CLN3-235ENST00000568497 PHKBQ93100 1093 aa16.03■□□□□ 0.16
CLN3-235ENST00000568497 Q9Y3F1 56 aa16.03■□□□□ 0.16
CLN3-235ENST00000568497 CYP46A1Q9Y6A2 500 aa16.03■□□□□ 0.16
CLN3-235ENST00000568497 ZNF318Q5VUA4 2279 aa16.03■□□□□ 0.16
CLN3-235ENST00000568497 WDR19Q8NEZ3 1342 aa16.02■□□□□ 0.16
CLN3-235ENST00000568497 GRXCR2A6NFK2 248 aa16.02■□□□□ 0.16
CLN3-235ENST00000568497 SMPD1P17405 629 aa16.02■□□□□ 0.16
CLN3-235ENST00000568497 PSMA5P28066 241 aa16.02■□□□□ 0.16
CLN3-235ENST00000568497 METAP2P50579 478 aaKnown RBP eCLIP16.02■□□□□ 0.16
CLN3-235ENST00000568497 FUT2Q10981 343 aa16.02■□□□□ 0.16
CLN3-235ENST00000568497 TYW1BQ6NUM6 668 aa16.02■□□□□ 0.16
CLN3-235ENST00000568497 EP400NLQ6ZTU2 488 aa16.02■□□□□ 0.16
CLN3-235ENST00000568497 TMCO2Q7Z6W1 182 aaPredicted RBP16.02■□□□□ 0.16
CLN3-235ENST00000568497 FCHSD1Q86WN1 690 aa16.02■□□□□ 0.16
CLN3-235ENST00000568497 SYTL5Q8TDW5 730 aaPredicted RBP16.02■□□□□ 0.16
CLN3-235ENST00000568497 MFSD14AQ96MC6 490 aa16.02■□□□□ 0.16
CLN3-235ENST00000568497 AMNQ9BXJ7 453 aa16.02■□□□□ 0.16
CLN3-235ENST00000568497 V9GY48 417 aaPredicted RBP16.02■□□□□ 0.16
CLN3-235ENST00000568497 TANC1Q9C0D5 1861 aa16.01■□□□□ 0.15
CLN3-235ENST00000568497 ABCB11O95342 1321 aa16.01■□□□□ 0.15
CLN3-235ENST00000568497 PNMA6FA0A0J9YX94 578 aa16.01■□□□□ 0.15
CLN3-235ENST00000568497 ASB14A6NK59 587 aa16.01■□□□□ 0.15
CLN3-235ENST00000568497 H3BQ06 376 aaPredicted RBP16.01■□□□□ 0.15
CLN3-235ENST00000568497 SORBS3O60504 671 aa16.01■□□□□ 0.15
CLN3-235ENST00000568497 HMGB1P09429 215 aaKnown RBP16.01■□□□□ 0.15
CLN3-235ENST00000568497 EIF2AK2P19525 551 aaKnown RBP16.01■□□□□ 0.15
CLN3-235ENST00000568497 PDIA3P30101 505 aaKnown RBP16.01■□□□□ 0.15
CLN3-235ENST00000568497 KIF5BP33176 963 aa16.01■□□□□ 0.15
CLN3-235ENST00000568497 UBE2SQ16763 222 aa16.01■□□□□ 0.15
CLN3-235ENST00000568497 PUS10Q3MIT2 529 aaKnown RBP16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms