RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 SGO2Q562F6 1265 aa7.22□□□□□ -1.25
VPS39-209ENST00000568029 C1orf141Q5JVX7 400 aa7.22□□□□□ -1.25
VPS39-209ENST00000568029 ANKRD45Q5TZF3 282 aa7.22□□□□□ -1.25
VPS39-209ENST00000568029 FBXW10Q5XX13 1052 aa7.22□□□□□ -1.25
VPS39-209ENST00000568029 OVOS1Q6IE37 1185 aa7.22□□□□□ -1.25
VPS39-209ENST00000568029 SEZ6L2Q6UXD5 910 aa7.22□□□□□ -1.25
VPS39-209ENST00000568029 NLRC3Q7RTR2 1065 aa7.22□□□□□ -1.25
VPS39-209ENST00000568029 CLEC10AQ8IUN9 316 aa7.22□□□□□ -1.25
VPS39-209ENST00000568029 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.22□□□□□ -1.25
VPS39-209ENST00000568029 CKAP2LQ8IYA6 745 aa7.22□□□□□ -1.25
VPS39-209ENST00000568029 MFSD2AQ8NA29 543 aa7.22□□□□□ -1.25
VPS39-209ENST00000568029 IL17REQ8NFR9 667 aa7.22□□□□□ -1.25
VPS39-209ENST00000568029 DHX38Q92620 1227 aaKnown RBP7.22□□□□□ -1.25
VPS39-209ENST00000568029 ATG4CQ96DT6 458 aa7.22□□□□□ -1.25
VPS39-209ENST00000568029 FOXQ1Q9C009 403 aa7.22□□□□□ -1.25
VPS39-209ENST00000568029 SLC12A7Q9Y666 1083 aa7.22□□□□□ -1.25
VPS39-209ENST00000568029 MRC1P22897 1456 aa7.22□□□□□ -1.25
VPS39-209ENST00000568029 ERVV-2B6SEH9 535 aa7.21□□□□□ -1.26
VPS39-209ENST00000568029 DNAJA2O60884 412 aa7.21□□□□□ -1.26
VPS39-209ENST00000568029 HMMRO75330 724 aa7.21□□□□□ -1.26
VPS39-209ENST00000568029 NME1P15531 152 aaKnown RBP7.21□□□□□ -1.26
VPS39-209ENST00000568029 GUCY2CP25092 1073 aa7.21□□□□□ -1.26
VPS39-209ENST00000568029 ETFBP38117 255 aa7.21□□□□□ -1.26
VPS39-209ENST00000568029 ECE1P42892 770 aa7.21□□□□□ -1.26
VPS39-209ENST00000568029 TEFQ10587 303 aa7.21□□□□□ -1.26
VPS39-209ENST00000568029 SLC39A6Q13433 755 aa7.21□□□□□ -1.26
VPS39-209ENST00000568029 NKG7Q16617 165 aa7.21□□□□□ -1.26
VPS39-209ENST00000568029 KRT24Q2M2I5 525 aa7.21□□□□□ -1.26
VPS39-209ENST00000568029 ZNF530Q6P9A1 599 aaPredicted RBP7.21□□□□□ -1.26
VPS39-209ENST00000568029 SAPCD2Q86UD0 394 aa7.21□□□□□ -1.26
VPS39-209ENST00000568029 ANKRD44Q8N8A2 993 aa7.21□□□□□ -1.26
VPS39-209ENST00000568029 FAM13CQ8NE31 585 aa7.21□□□□□ -1.26
VPS39-209ENST00000568029 FBLIM1Q8WUP2 373 aa7.21□□□□□ -1.26
VPS39-209ENST00000568029 ANAPC16Q96DE5 110 aa7.21□□□□□ -1.26
VPS39-209ENST00000568029 PSMG3-AS1Q96PY0 264 aa7.21□□□□□ -1.26
VPS39-209ENST00000568029 SSU72Q9NP77 194 aaKnown RBP7.21□□□□□ -1.26
VPS39-209ENST00000568029 FAM95CA0A1B0GW59 222 aa7.2□□□□□ -1.26
VPS39-209ENST00000568029 KLF4O43474 513 aa7.2□□□□□ -1.26
VPS39-209ENST00000568029 NFICP08651 508 aa7.2□□□□□ -1.26
VPS39-209ENST00000568029 GNAI3P08754 354 aa7.2□□□□□ -1.26
VPS39-209ENST00000568029 HOXB7P09629 217 aa7.2□□□□□ -1.26
VPS39-209ENST00000568029 SRGNP10124 158 aa7.2□□□□□ -1.26
VPS39-209ENST00000568029 RAB6AP20340 208 aa7.2□□□□□ -1.26
VPS39-209ENST00000568029 PAOXQ6QHF9 649 aa7.2□□□□□ -1.26
VPS39-209ENST00000568029 ARMCX6Q7L4S7 300 aa7.2□□□□□ -1.26
VPS39-209ENST00000568029 CYB5D2Q8WUJ1 264 aa7.2□□□□□ -1.26
VPS39-209ENST00000568029 FAM83CQ9BQN1 747 aa7.2□□□□□ -1.26
VPS39-209ENST00000568029 GLIS2Q9BZE0 524 aaPredicted RBP7.2□□□□□ -1.26
VPS39-209ENST00000568029 LNPKQ9C0E8 428 aa7.2□□□□□ -1.26
VPS39-209ENST00000568029 DCTPP1Q9H773 170 aa7.2□□□□□ -1.26
VPS39-209ENST00000568029 PAPPA2Q9BXP8 1791 aa7.2□□□□□ -1.26
VPS39-209ENST00000568029 BTBD11A6QL63 1104 aa7.19□□□□□ -1.26
VPS39-209ENST00000568029 CHURC1-FNTBB4DL54 471 aa7.19□□□□□ -1.26
VPS39-209ENST00000568029 FZD9O00144 591 aa7.19□□□□□ -1.26
VPS39-209ENST00000568029 RGS13O14921 159 aa7.19□□□□□ -1.26
VPS39-209ENST00000568029 CELF2O95319 508 aaKnown RBP7.19□□□□□ -1.26
VPS39-209ENST00000568029 GNAI2P04899 355 aa7.19□□□□□ -1.26
VPS39-209ENST00000568029 MAP2K2P36507 400 aa7.19□□□□□ -1.26
VPS39-209ENST00000568029 PLA2G4EQ3MJ16 856 aa7.19□□□□□ -1.26
VPS39-209ENST00000568029 SLC4A10Q6U841 1118 aa7.19□□□□□ -1.26
VPS39-209ENST00000568029 BEND4Q6ZU67 534 aa7.19□□□□□ -1.26
VPS39-209ENST00000568029 UBE3DQ7Z6J8 389 aa7.19□□□□□ -1.26
VPS39-209ENST00000568029 PNMA8AQ86V59 439 aaPredicted RBP7.19□□□□□ -1.26
VPS39-209ENST00000568029 FAM169BQ8N8A8 192 aa7.19□□□□□ -1.26
VPS39-209ENST00000568029 CCDC74BQ96LY2 380 aa7.19□□□□□ -1.26
VPS39-209ENST00000568029 BRIP1Q9BX63 1249 aa7.19□□□□□ -1.26
VPS39-209ENST00000568029 ANTXR1Q9H6X2 564 aa7.19□□□□□ -1.26
VPS39-209ENST00000568029 KLHL3Q9UH77 587 aa7.19□□□□□ -1.26
VPS39-209ENST00000568029 DAGLAQ9Y4D2 1042 aa7.19□□□□□ -1.26
VPS39-209ENST00000568029 MRVI1Q9Y6F6 885 aa7.19□□□□□ -1.26
VPS39-209ENST00000568029 SHTN1A0MZ66 631 aa7.18□□□□□ -1.26
VPS39-209ENST00000568029 FAM155AB1AL88 458 aaPredicted RBP7.18□□□□□ -1.26
VPS39-209ENST00000568029 SMAD7O15105 426 aaKnown RBP7.18□□□□□ -1.26
VPS39-209ENST00000568029 RNMTO43148 476 aaKnown RBP7.18□□□□□ -1.26
VPS39-209ENST00000568029 ITGB2P05107 769 aa7.18□□□□□ -1.26
VPS39-209ENST00000568029 RAG1P15918 1043 aa7.18□□□□□ -1.26
VPS39-209ENST00000568029 IARSP41252 1262 aaKnown RBP7.18□□□□□ -1.26
VPS39-209ENST00000568029 EIF4A1P60842 406 aaKnown RBP7.18□□□□□ -1.26
VPS39-209ENST00000568029 RAB33AQ14088 237 aa7.18□□□□□ -1.26
VPS39-209ENST00000568029 CCDC93Q567U6 631 aa7.18□□□□□ -1.26
VPS39-209ENST00000568029 ARSHQ5FYA8 562 aa7.18□□□□□ -1.26
VPS39-209ENST00000568029 BMP2KLQ5H9B9 411 aa7.18□□□□□ -1.26
VPS39-209ENST00000568029 PRAMEF13Q5VWM6 474 aa7.18□□□□□ -1.26
VPS39-209ENST00000568029 STYK1Q6J9G0 422 aa7.18□□□□□ -1.26
VPS39-209ENST00000568029 ANKS3Q6ZW76 656 aa7.18□□□□□ -1.26
VPS39-209ENST00000568029 G2E3Q7L622 706 aa7.18□□□□□ -1.26
VPS39-209ENST00000568029 SIRT2Q8IXJ6 389 aa7.18□□□□□ -1.26
VPS39-209ENST00000568029 SYNE4Q8N205 404 aa7.18□□□□□ -1.26
VPS39-209ENST00000568029 GIMAP7Q8NHV1 300 aa7.18□□□□□ -1.26
VPS39-209ENST00000568029 TBC1D32Q96NH3 1257 aa7.18□□□□□ -1.26
VPS39-209ENST00000568029 LGR6Q9HBX8 967 aa7.18□□□□□ -1.26
VPS39-209ENST00000568029 C1GALT1Q9NS00 363 aa7.18□□□□□ -1.26
VPS39-209ENST00000568029 RAXQ9Y2V3 346 aa7.18□□□□□ -1.26
VPS39-209ENST00000568029 DLG5Q8TDM6 1919 aa7.18□□□□□ -1.26
VPS39-209ENST00000568029 CEMIPQ8WUJ3 1361 aa7.18□□□□□ -1.26
VPS39-209ENST00000568029 A0A1W2PQH9 124 aa7.17□□□□□ -1.26
VPS39-209ENST00000568029 UPK3BL1B0FP48 263 aa7.17□□□□□ -1.26
VPS39-209ENST00000568029 UPK3BL2E5RIL1 263 aa7.17□□□□□ -1.26
VPS39-209ENST00000568029 CA12O43570 354 aa7.17□□□□□ -1.26
VPS39-209ENST00000568029 H2AFB1P0C5Y9 115 aa7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms