RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 UBA1P22314 1058 aaKnown RBP21.48■■□□□ 1.03
CLN3-227ENST00000567495 CDC27P30260 824 aa21.48■■□□□ 1.03
CLN3-227ENST00000567495 NAPAP54920 295 aa21.48■■□□□ 1.03
CLN3-227ENST00000567495 C9orf50Q5SZB4 431 aa21.48■■□□□ 1.03
CLN3-227ENST00000567495 WWC2Q6AWC2 1192 aa21.48■■□□□ 1.03
CLN3-227ENST00000567495 NLRX1Q86UT6 975 aa21.48■■□□□ 1.03
CLN3-227ENST00000567495 SESTD1Q86VW0 696 aa21.48■■□□□ 1.03
CLN3-227ENST00000567495 GPKOWQ92917 476 aaPredicted RBP eCLIP21.48■■□□□ 1.03
CLN3-227ENST00000567495 CDHR1Q96JP9 859 aa21.48■■□□□ 1.03
CLN3-227ENST00000567495 SENP7Q9BQF6 1050 aa21.48■■□□□ 1.03
CLN3-227ENST00000567495 NOC4LQ9BVI4 516 aaKnown RBP21.48■■□□□ 1.03
CLN3-227ENST00000567495 PPP1R12CQ9BZL4 782 aa21.48■■□□□ 1.03
CLN3-227ENST00000567495 BARHL2Q9NY43 387 aa21.48■■□□□ 1.03
CLN3-227ENST00000567495 NID2Q14112 1375 aa21.48■■□□□ 1.03
CLN3-227ENST00000567495 FOSP01100 380 aaPredicted RBP21.47■■□□□ 1.03
CLN3-227ENST00000567495 ADD1P35611 737 aaKnown RBP21.47■■□□□ 1.03
CLN3-227ENST00000567495 GIMAP8Q8ND71 665 aaPredicted RBP21.47■■□□□ 1.03
CLN3-227ENST00000567495 RNPC3Q96LT9 517 aaKnown RBP21.47■■□□□ 1.03
CLN3-227ENST00000567495 RIC8AQ9NPQ8 531 aa21.47■■□□□ 1.03
CLN3-227ENST00000567495 TRMT13Q9NUP7 481 aaKnown RBP21.47■■□□□ 1.03
CLN3-227ENST00000567495 F2P00734 622 aa21.46■■□□□ 1.03
CLN3-227ENST00000567495 CYP2C18P33260 490 aa21.46■■□□□ 1.03
CLN3-227ENST00000567495 ADCY7P51828 1080 aa21.46■■□□□ 1.03
CLN3-227ENST00000567495 EPHB4P54760 987 aa21.46■■□□□ 1.03
CLN3-227ENST00000567495 SP2Q02086 613 aa21.46■■□□□ 1.03
CLN3-227ENST00000567495 METTL7BQ6UX53 244 aa21.46■■□□□ 1.03
CLN3-227ENST00000567495 KAT2BQ92831 832 aa21.46■■□□□ 1.03
CLN3-227ENST00000567495 GPRASP2Q96D09 838 aa21.46■■□□□ 1.03
CLN3-227ENST00000567495 RTEL1Q9NZ71 1219 aa21.46■■□□□ 1.03
CLN3-227ENST00000567495 LTBP2Q14767 1821 aa21.45■■□□□ 1.03
CLN3-227ENST00000567495 MAFGO15525 162 aa21.45■■□□□ 1.02
CLN3-227ENST00000567495 CSF2RAP15509 400 aa21.45■■□□□ 1.02
CLN3-227ENST00000567495 AKAP17AQ02040 695 aaKnown RBP21.45■■□□□ 1.02
CLN3-227ENST00000567495 UBE2SQ16763 222 aa21.45■■□□□ 1.02
CLN3-227ENST00000567495 PFKFB3Q16875 520 aaPredicted RBP21.45■■□□□ 1.02
CLN3-227ENST00000567495 FAM109BQ6ICB4 259 aaPredicted RBP21.45■■□□□ 1.02
CLN3-227ENST00000567495 PSRC1Q6PGN9 363 aaPredicted RBP21.45■■□□□ 1.02
CLN3-227ENST00000567495 RPUSD2Q8IZ73 545 aaKnown RBP21.45■■□□□ 1.02
CLN3-227ENST00000567495 CCDC12Q8WUD4 166 aaPredicted RBP21.45■■□□□ 1.02
CLN3-227ENST00000567495 PCDHA6Q9UN73 950 aa21.45■■□□□ 1.02
CLN3-227ENST00000567495 NOD1Q9Y239 953 aa21.45■■□□□ 1.02
CLN3-227ENST00000567495 PCDHA8Q9Y5H6 950 aa21.45■■□□□ 1.02
CLN3-227ENST00000567495 STXBP3O00186 592 aa21.44■■□□□ 1.02
CLN3-227ENST00000567495 NOP56O00567 594 aaKnown RBP21.44■■□□□ 1.02
CLN3-227ENST00000567495 PRPF3O43395 683 aaKnown RBP21.44■■□□□ 1.02
CLN3-227ENST00000567495 SCG2P13521 617 aa21.44■■□□□ 1.02
CLN3-227ENST00000567495 PDIA3P30101 505 aaKnown RBP21.44■■□□□ 1.02
CLN3-227ENST00000567495 SMAD3P84022 425 aaKnown RBP21.44■■□□□ 1.02
CLN3-227ENST00000567495 AP3B2Q13367 1082 aa21.44■■□□□ 1.02
CLN3-227ENST00000567495 BFSP2Q13515 415 aa21.44■■□□□ 1.02
CLN3-227ENST00000567495 HSDL1Q3SXM5 330 aa21.44■■□□□ 1.02
CLN3-227ENST00000567495 MCTP2Q6DN12 878 aa21.44■■□□□ 1.02
CLN3-227ENST00000567495 C7orf31Q8N865 590 aa21.44■■□□□ 1.02
CLN3-227ENST00000567495 ZFP91Q96JP5 570 aaPredicted RBP21.44■■□□□ 1.02
CLN3-227ENST00000567495 IL23AQ9NPF7 189 aa21.44■■□□□ 1.02
CLN3-227ENST00000567495 SCN10AQ9Y5Y9 1956 aa21.43■■□□□ 1.02
CLN3-227ENST00000567495 SMCO2A6NFE2 343 aa21.43■■□□□ 1.02
CLN3-227ENST00000567495 PITPNM1O00562 1244 aa21.43■■□□□ 1.02
CLN3-227ENST00000567495 PSEN2P49810 448 aa21.43■■□□□ 1.02
CLN3-227ENST00000567495 CHMP4BP1P59074 171 aa21.43■■□□□ 1.02
CLN3-227ENST00000567495 ANAPC15P60006 121 aa21.43■■□□□ 1.02
CLN3-227ENST00000567495 MFSD10Q14728 455 aa21.43■■□□□ 1.02
CLN3-227ENST00000567495 PTGISQ16647 500 aa21.43■■□□□ 1.02
CLN3-227ENST00000567495 MTIF3Q9H2K0 278 aaKnown RBP21.43■■□□□ 1.02
CLN3-227ENST00000567495 ESYT2A0FGR8 921 aa21.42■■□□□ 1.02
CLN3-227ENST00000567495 HAS3O00219 553 aa21.42■■□□□ 1.02
CLN3-227ENST00000567495 PFKMP08237 780 aa21.42■■□□□ 1.02
CLN3-227ENST00000567495 CYP2C9P11712 490 aa21.42■■□□□ 1.02
CLN3-227ENST00000567495 SEMA3FQ13275 785 aa21.42■■□□□ 1.02
CLN3-227ENST00000567495 KIAA0753Q2KHM9 967 aa21.42■■□□□ 1.02
CLN3-227ENST00000567495 TMEM240Q5SV17 173 aa21.42■■□□□ 1.02
CLN3-227ENST00000567495 TYW1BQ6NUM6 668 aa21.42■■□□□ 1.02
CLN3-227ENST00000567495 CYFIP1Q7L576 1253 aa21.42■■□□□ 1.02
CLN3-227ENST00000567495 DEFB123Q8N688 67 aa21.42■■□□□ 1.02
CLN3-227ENST00000567495 CCDC155Q8N6L0 562 aa21.42■■□□□ 1.02
CLN3-227ENST00000567495 RETREG2Q8NC44 543 aa21.42■■□□□ 1.02
CLN3-227ENST00000567495 ZNF274Q96GC6 653 aaPredicted RBP21.42■■□□□ 1.02
CLN3-227ENST00000567495 BUD13Q9BRD0 619 aaKnown RBP eCLIP21.42■■□□□ 1.023e-6■□□□□ 10.1
CLN3-227ENST00000567495 RNF26Q9BY78 433 aaPredicted RBP21.42■■□□□ 1.02
CLN3-227ENST00000567495 UBIAD1Q9Y5Z9 338 aa21.42■■□□□ 1.02
CLN3-227ENST00000567495 ZNF286BP0CG31 522 aa21.41■■□□□ 1.02
CLN3-227ENST00000567495 IFNAR1P17181 557 aa21.41■■□□□ 1.02
CLN3-227ENST00000567495 ITGB5P18084 799 aa21.41■■□□□ 1.02
CLN3-227ENST00000567495 RFC2P35250 354 aa21.41■■□□□ 1.02
CLN3-227ENST00000567495 MTMR1Q13613 665 aa21.41■■□□□ 1.02
CLN3-227ENST00000567495 C16orf59Q7L2K0 433 aa21.41■■□□□ 1.02
CLN3-227ENST00000567495 CAGE1Q8TC20 777 aa21.41■■□□□ 1.02
CLN3-227ENST00000567495 WNT8AQ9H1J5 351 aa21.41■■□□□ 1.02
CLN3-227ENST00000567495 C6orf50Q9HD87 102 aa21.41■■□□□ 1.02
CLN3-227ENST00000567495 JADE2Q9NQC1 790 aa21.41■■□□□ 1.02
CLN3-227ENST00000567495 PDRG1Q9NUG6 133 aa21.41■■□□□ 1.02
CLN3-227ENST00000567495 GTF2IRD1Q9UHL9 959 aa21.41■■□□□ 1.02
CLN3-227ENST00000567495 KIAA1217Q5T5P2 1943 aa21.41■■□□□ 1.02
CLN3-227ENST00000567495 HSFX4A0A1B0GTS1 333 aaPredicted RBP21.4■■□□□ 1.02
CLN3-227ENST00000567495 HSFX3A0A1B0GWH4 333 aaPredicted RBP21.4■■□□□ 1.02
CLN3-227ENST00000567495 FGBP02675 491 aa21.4■■□□□ 1.02
CLN3-227ENST00000567495 GNA11P29992 359 aa21.4■■□□□ 1.02
CLN3-227ENST00000567495 CCL23P55773 120 aa21.4■■□□□ 1.02
CLN3-227ENST00000567495 TOB2Q14106 344 aaPredicted RBP21.4■■□□□ 1.02
CLN3-227ENST00000567495 NTRK3Q16288 839 aa21.4■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms