RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 IL31RAQ8NI17 732 aa21.66■■□□□ 1.06
CLN3-218ENST00000565688 SPTBN5Q9NRC6 3674 aaKnown RBP21.66■■□□□ 1.06
CLN3-218ENST00000565688 KIF28PB7ZC32 967 aa21.65■■□□□ 1.06
CLN3-218ENST00000565688 STAM2O75886 525 aa21.65■■□□□ 1.06
CLN3-218ENST00000565688 DDAH1O94760 285 aa21.65■■□□□ 1.06
CLN3-218ENST00000565688 ZNF286BP0CG31 522 aa21.65■■□□□ 1.06
CLN3-218ENST00000565688 PTK7Q13308 1070 aa21.65■■□□□ 1.06
CLN3-218ENST00000565688 GNPTABQ3T906 1256 aa21.65■■□□□ 1.06
CLN3-218ENST00000565688 TJAP1Q5JTD0 557 aa21.65■■□□□ 1.06
CLN3-218ENST00000565688 CASC1Q6TDU7 716 aa21.65■■□□□ 1.06
CLN3-218ENST00000565688 CTCFLQ8NI51 663 aaPredicted RBP21.65■■□□□ 1.06
CLN3-218ENST00000565688 PPM1EQ8WY54 764 aa21.65■■□□□ 1.06
CLN3-218ENST00000565688 LZTS2Q9BRK4 669 aa21.65■■□□□ 1.06
CLN3-218ENST00000565688 ALG1Q9BT22 464 aa21.65■■□□□ 1.06
CLN3-218ENST00000565688 SPZ1Q9BXG8 430 aa21.65■■□□□ 1.06
CLN3-218ENST00000565688 CA3P07451 260 aa21.64■■□□□ 1.05
CLN3-218ENST00000565688 CKBP12277 381 aa21.64■■□□□ 1.05
CLN3-218ENST00000565688 UBA1P22314 1058 aaKnown RBP21.64■■□□□ 1.05
CLN3-218ENST00000565688 SMARCA1P28370 1054 aa21.64■■□□□ 1.05
CLN3-218ENST00000565688 KCNJ6P48051 423 aa21.64■■□□□ 1.05
CLN3-218ENST00000565688 HSDL1Q3SXM5 330 aa21.64■■□□□ 1.05
CLN3-218ENST00000565688 HERC6Q8IVU3 1022 aa21.64■■□□□ 1.05
CLN3-218ENST00000565688 ZNF654Q8IZM8 581 aa21.64■■□□□ 1.05
CLN3-218ENST00000565688 TMTC2Q8N394 836 aa21.64■■□□□ 1.05
CLN3-218ENST00000565688 ATXN2LQ8WWM7 1075 aaKnown RBP21.64■■□□□ 1.05
CLN3-218ENST00000565688 DHX38Q92620 1227 aaKnown RBP21.64■■□□□ 1.05
CLN3-218ENST00000565688 RRP36Q96EU6 259 aaKnown RBP21.64■■□□□ 1.05
CLN3-218ENST00000565688 MLXIPQ9HAP2 919 aa21.64■■□□□ 1.05
CLN3-218ENST00000565688 LY9Q9HBG7 655 aa21.64■■□□□ 1.05
CLN3-218ENST00000565688 BAZ2BQ9UIF8 2168 aaKnown RBP21.64■■□□□ 1.05
CLN3-218ENST00000565688 FRMPD4Q14CM0 1322 aa21.63■■□□□ 1.05
CLN3-218ENST00000565688 MCM5P33992 734 aa21.63■■□□□ 1.05
CLN3-218ENST00000565688 GNAQP50148 359 aa21.63■■□□□ 1.05
CLN3-218ENST00000565688 SP2Q02086 613 aa21.63■■□□□ 1.05
CLN3-218ENST00000565688 THEGQ9P2T0 379 aa21.63■■□□□ 1.05
CLN3-218ENST00000565688 SEC63Q9UGP8 760 aaKnown RBP21.63■■□□□ 1.05
CLN3-218ENST00000565688 PRC1O43663 620 aa21.62■■□□□ 1.05
CLN3-218ENST00000565688 CXCL10P02778 98 aa21.62■■□□□ 1.05
CLN3-218ENST00000565688 CNKSR3Q6P9H4 555 aa21.62■■□□□ 1.05
CLN3-218ENST00000565688 PIBF1Q8WXW3 757 aa21.62■■□□□ 1.05
CLN3-218ENST00000565688 CUL5Q93034 780 aa21.62■■□□□ 1.05
CLN3-218ENST00000565688 TMEM87BQ96K49 555 aa21.62■■□□□ 1.05
CLN3-218ENST00000565688 INPP4AQ96PE3 977 aaPredicted RBP21.62■■□□□ 1.05
CLN3-218ENST00000565688 TSPYL2Q9H2G4 693 aaPredicted RBP21.62■■□□□ 1.05
CLN3-218ENST00000565688 MYH7BA7E2Y1 1941 aa21.62■■□□□ 1.05
CLN3-218ENST00000565688 TRIP12Q14669 1992 aaPredicted RBP21.61■■□□□ 1.05
CLN3-218ENST00000565688 SORBS3O60504 671 aa21.61■■□□□ 1.05
CLN3-218ENST00000565688 EFCAB14O75071 495 aa21.61■■□□□ 1.05
CLN3-218ENST00000565688 ICAM3P32942 547 aa21.61■■□□□ 1.05
CLN3-218ENST00000565688 NEDD9Q14511 834 aa21.61■■□□□ 1.05
CLN3-218ENST00000565688 GPNMBQ14956 572 aa21.61■■□□□ 1.05
CLN3-218ENST00000565688 CCDC85BQ15834 202 aaPredicted RBP21.61■■□□□ 1.05
CLN3-218ENST00000565688 XRRA1Q6P2D8 792 aa21.61■■□□□ 1.05
CLN3-218ENST00000565688 NFXL1Q6ZNB6 911 aa21.61■■□□□ 1.05
CLN3-218ENST00000565688 C16orf70Q9BSU1 422 aa21.61■■□□□ 1.05
CLN3-218ENST00000565688 CCDC69A6NI79 296 aa21.6■■□□□ 1.05
CLN3-218ENST00000565688 SPATA31C2B4DYI2 1134 aa21.6■■□□□ 1.05
CLN3-218ENST00000565688 NOP56O00567 594 aaKnown RBP21.6■■□□□ 1.05
CLN3-218ENST00000565688 CALM1P0DP23 149 aa21.6■■□□□ 1.05
CLN3-218ENST00000565688 CALM2P0DP24 149 aa21.6■■□□□ 1.05
CLN3-218ENST00000565688 CALM3P0DP25 149 aa21.6■■□□□ 1.05
CLN3-218ENST00000565688 WDR5P61964 334 aaKnown RBP21.6■■□□□ 1.05
CLN3-218ENST00000565688 MRPS9P82933 396 aaKnown RBP21.6■■□□□ 1.05
CLN3-218ENST00000565688 TET1Q8NFU7 2136 aa21.6■■□□□ 1.05
CLN3-218ENST00000565688 SMARCC2Q8TAQ2 1214 aa21.6■■□□□ 1.05
CLN3-218ENST00000565688 GPKOWQ92917 476 aaPredicted RBP eCLIP21.6■■□□□ 1.05
CLN3-218ENST00000565688 MYL10Q9BUA6 226 aa21.6■■□□□ 1.05
CLN3-218ENST00000565688 LSG1Q9H089 658 aaKnown RBP21.6■■□□□ 1.05
CLN3-218ENST00000565688 PRDM6Q9NQX0 595 aa21.6■■□□□ 1.05
CLN3-218ENST00000565688 ABHD14A-ACY1A0A1B0GW23 586 aa21.59■■□□□ 1.05
CLN3-218ENST00000565688 H3BRB1 525 aa21.59■■□□□ 1.05
CLN3-218ENST00000565688 PIK3CDO00329 1044 aa21.59■■□□□ 1.05
CLN3-218ENST00000565688 FIBPO43427 364 aa21.59■■□□□ 1.05
CLN3-218ENST00000565688 TLL1O43897 1013 aa21.59■■□□□ 1.05
CLN3-218ENST00000565688 NBNO60934 754 aa21.59■■□□□ 1.05
CLN3-218ENST00000565688 POU3F3P20264 500 aaPredicted RBP21.59■■□□□ 1.05
CLN3-218ENST00000565688 LIFRP42702 1097 aa21.59■■□□□ 1.05
CLN3-218ENST00000565688 TAP1Q03518 808 aa21.59■■□□□ 1.05
CLN3-218ENST00000565688 TRIM71Q2Q1W2 868 aaKnown RBP21.59■■□□□ 1.05
CLN3-218ENST00000565688 METTL7BQ6UX53 244 aa21.59■■□□□ 1.05
CLN3-218ENST00000565688 SERINC5Q86VE9 423 aa21.59■■□□□ 1.05
CLN3-218ENST00000565688 ZFP91Q96JP5 570 aaPredicted RBP21.59■■□□□ 1.05
CLN3-218ENST00000565688 ESYT1Q9BSJ8 1104 aa21.59■■□□□ 1.05
CLN3-218ENST00000565688 USP26Q9BXU7 913 aa21.59■■□□□ 1.05
CLN3-218ENST00000565688 TUT1Q9H6E5 874 aaKnown RBP21.59■■□□□ 1.05
CLN3-218ENST00000565688 EMSYQ7Z589 1322 aa21.58■■□□□ 1.05
CLN3-218ENST00000565688 SH2B2O14492 632 aaPredicted RBP21.58■■□□□ 1.05
CLN3-218ENST00000565688 SLC27A2O14975 620 aa21.58■■□□□ 1.05
CLN3-218ENST00000565688 GTPBP6O43824 516 aaPredicted RBP21.58■■□□□ 1.05
CLN3-218ENST00000565688 MRPS5P82675 430 aaKnown RBP21.58■■□□□ 1.05
CLN3-218ENST00000565688 ZNF200P98182 395 aaPredicted RBP21.58■■□□□ 1.05
CLN3-218ENST00000565688 IKBKEQ14164 716 aa21.58■■□□□ 1.05
CLN3-218ENST00000565688 ZNF618Q5T7W0 954 aa21.58■■□□□ 1.05
CLN3-218ENST00000565688 PCNX4Q63HM2 1172 aa21.58■■□□□ 1.05
CLN3-218ENST00000565688 ASB2Q96Q27 587 aa21.58■■□□□ 1.05
CLN3-218ENST00000565688 C17orf102A2RUQ5 167 aa21.57■■□□□ 1.04
CLN3-218ENST00000565688 LGALS2P05162 132 aa21.57■■□□□ 1.04
CLN3-218ENST00000565688 TRAF7Q6Q0C0 670 aa21.57■■□□□ 1.04
CLN3-218ENST00000565688 USP17L6PQ6QN14 398 aa21.57■■□□□ 1.04
CLN3-218ENST00000565688 ATP6V0A1Q93050 837 aa21.57■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms