RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 ARHGAP1Q07960 439 aa11.17□□□□□ -0.62
CLK3-208ENST00000562626 DUSP28Q4G0W2 176 aa11.17□□□□□ -0.62
CLK3-208ENST00000562626 GALNT17Q6IS24 598 aa11.17□□□□□ -0.62
CLK3-208ENST00000562626 FAM177A1Q8N128 213 aaPredicted RBP11.17□□□□□ -0.62
CLK3-208ENST00000562626 BICD2Q8TD16 824 aa11.17□□□□□ -0.62
CLK3-208ENST00000562626 INTS4Q96HW7 963 aaKnown RBP11.17□□□□□ -0.62
CLK3-208ENST00000562626 MXRA8Q9BRK3 442 aa11.17□□□□□ -0.62
CLK3-208ENST00000562626 GLT8D2Q9H1C3 349 aa11.17□□□□□ -0.62
CLK3-208ENST00000562626 OGDHLQ9ULD0 1010 aa11.17□□□□□ -0.62
CLK3-208ENST00000562626 FAM184BQ9ULE4 1060 aa11.17□□□□□ -0.62
CLK3-208ENST00000562626 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.17□□□□□ -0.62
CLK3-208ENST00000562626 MKI67P46013 3256 aaKnown RBP11.17□□□□□ -0.62
CLK3-208ENST00000562626 LTBP2Q14767 1821 aa11.16□□□□□ -0.62
CLK3-208ENST00000562626 SCN5AQ14524 2016 aa11.16□□□□□ -0.62
CLK3-208ENST00000562626 SPATA31C2B4DYI2 1134 aa11.16□□□□□ -0.62
CLK3-208ENST00000562626 SLC37A4O43826 429 aa11.16□□□□□ -0.62
CLK3-208ENST00000562626 DUSP11O75319 330 aaKnown RBP11.16□□□□□ -0.62
CLK3-208ENST00000562626 TXNP10599 105 aaKnown RBP11.16□□□□□ -0.62
CLK3-208ENST00000562626 KCNA2P16389 499 aa11.16□□□□□ -0.62
CLK3-208ENST00000562626 XBP1P17861 261 aa11.16□□□□□ -0.62
CLK3-208ENST00000562626 SYT1P21579 422 aa11.16□□□□□ -0.62
CLK3-208ENST00000562626 ICAM3P32942 547 aa11.16□□□□□ -0.62
CLK3-208ENST00000562626 FXR1P51114 621 aaKnown RBP eCLIP11.16□□□□□ -0.62
CLK3-208ENST00000562626 ITGB3BPQ13352 177 aaPredicted RBP11.16□□□□□ -0.62
CLK3-208ENST00000562626 PKP1Q13835 747 aa11.16□□□□□ -0.62
CLK3-208ENST00000562626 NBR1Q14596 966 aa11.16□□□□□ -0.62
CLK3-208ENST00000562626 NONOQ15233 471 aaKnown RBP eCLIP11.16□□□□□ -0.62
CLK3-208ENST00000562626 IQSEC1Q6DN90 963 aa11.16□□□□□ -0.62
CLK3-208ENST00000562626 KRT25Q7Z3Z0 450 aa11.16□□□□□ -0.62
CLK3-208ENST00000562626 TLK2Q86UE8 772 aa11.16□□□□□ -0.62
CLK3-208ENST00000562626 TEX2Q8IWB9 1127 aa11.16□□□□□ -0.62
CLK3-208ENST00000562626 SCFD2Q8WU76 684 aa11.16□□□□□ -0.62
CLK3-208ENST00000562626 UPF3AQ9H1J1 476 aaKnown RBP11.16□□□□□ -0.62
CLK3-208ENST00000562626 JADE2Q9NQC1 790 aa11.16□□□□□ -0.62
CLK3-208ENST00000562626 MRVI1Q9Y6F6 885 aa11.16□□□□□ -0.62
CLK3-208ENST00000562626 CCDC194A0A1B0GVG4 234 aa11.15□□□□□ -0.62
CLK3-208ENST00000562626 B4DLN1 442 aa11.15□□□□□ -0.62
CLK3-208ENST00000562626 RBAK-RBAKDNI3L0D1 243 aa11.15□□□□□ -0.62
CLK3-208ENST00000562626 MEIS1O00470 390 aa11.15□□□□□ -0.62
CLK3-208ENST00000562626 DYNC1LI2O43237 492 aaPredicted RBP11.15□□□□□ -0.62
CLK3-208ENST00000562626 RARBP10826 455 aa11.15□□□□□ -0.62
CLK3-208ENST00000562626 CIITAP33076 1130 aa11.15□□□□□ -0.62
CLK3-208ENST00000562626 TOB1P50616 345 aaPredicted RBP11.15□□□□□ -0.62
CLK3-208ENST00000562626 GJA9P57773 515 aa11.15□□□□□ -0.62
CLK3-208ENST00000562626 TRIM29Q14134 588 aa11.15□□□□□ -0.62
CLK3-208ENST00000562626 LRRC41Q15345 812 aa11.15□□□□□ -0.62
CLK3-208ENST00000562626 CEP55Q53EZ4 464 aa11.15□□□□□ -0.62
CLK3-208ENST00000562626 LARP1BQ659C4 914 aaKnown RBP11.15□□□□□ -0.62
CLK3-208ENST00000562626 CCSAPQ6IQ19 270 aaPredicted RBP11.15□□□□□ -0.62
CLK3-208ENST00000562626 KLHDC9Q8NEP7 349 aa11.15□□□□□ -0.62
CLK3-208ENST00000562626 PPP1R13LQ8WUF5 828 aa11.15□□□□□ -0.62
CLK3-208ENST00000562626 MBOAT7Q96N66 472 aa11.15□□□□□ -0.62
CLK3-208ENST00000562626 MPHOSPH6Q99547 160 aaKnown RBP11.15□□□□□ -0.62
CLK3-208ENST00000562626 XPNPEP3Q9NQH7 507 aa11.15□□□□□ -0.62
CLK3-208ENST00000562626 TSHZ2Q9NRE2 1034 aa11.15□□□□□ -0.62
CLK3-208ENST00000562626 KCNH7Q9NS40 1196 aa11.15□□□□□ -0.62
CLK3-208ENST00000562626 DHX15O43143 795 aaKnown RBP11.14□□□□□ -0.63
CLK3-208ENST00000562626 FIBPO43427 364 aa11.14□□□□□ -0.63
CLK3-208ENST00000562626 GGPS1O95749 300 aa11.14□□□□□ -0.63
CLK3-208ENST00000562626 TFRCP02786 760 aaKnown RBP11.14□□□□□ -0.63
CLK3-208ENST00000562626 MYCNP04198 464 aaPredicted RBP11.14□□□□□ -0.63
CLK3-208ENST00000562626 U2AF2P26368 475 aaKnown RBP eCLIP11.14□□□□□ -0.63
CLK3-208ENST00000562626 MTMR1Q13613 665 aa11.14□□□□□ -0.63
CLK3-208ENST00000562626 TTLL4Q14679 1199 aa11.14□□□□□ -0.63
CLK3-208ENST00000562626 LETM2Q2VYF4 491 aa11.14□□□□□ -0.63
CLK3-208ENST00000562626 PRR16Q569H4 304 aa11.14□□□□□ -0.63
CLK3-208ENST00000562626 MYSM1Q5VVJ2 828 aa11.14□□□□□ -0.63
CLK3-208ENST00000562626 XRRA1Q6P2D8 792 aa11.14□□□□□ -0.63
CLK3-208ENST00000562626 UBE2Q1Q7Z7E8 422 aa11.14□□□□□ -0.63
CLK3-208ENST00000562626 FERMT3Q86UX7 667 aa11.14□□□□□ -0.63
CLK3-208ENST00000562626 PLA2G4DQ86XP0 818 aa11.14□□□□□ -0.63
CLK3-208ENST00000562626 OR6J1Q8NGC5 347 aa11.14□□□□□ -0.63
CLK3-208ENST00000562626 GPRASP2Q96D09 838 aa11.14□□□□□ -0.63
CLK3-208ENST00000562626 TMEM106CQ9BVX2 250 aa11.14□□□□□ -0.63
CLK3-208ENST00000562626 FOXP1Q9H334 677 aaPredicted RBP11.14□□□□□ -0.63
CLK3-208ENST00000562626 EHMT1Q9H9B1 1298 aa11.14□□□□□ -0.63
CLK3-208ENST00000562626 AGO4Q9HCK5 861 aaKnown RBP11.14□□□□□ -0.63
CLK3-208ENST00000562626 MTMR6Q9Y217 621 aa11.14□□□□□ -0.63
CLK3-208ENST00000562626 TANC1Q9C0D5 1861 aa11.14□□□□□ -0.63
CLK3-208ENST00000562626 CYP3A7-CYP3A51PA0A087WV96 503 aa11.13□□□□□ -0.63
CLK3-208ENST00000562626 VPS37CA5D8V6 355 aaPredicted RBP11.13□□□□□ -0.63
CLK3-208ENST00000562626 MSH4O15457 936 aa11.13□□□□□ -0.63
CLK3-208ENST00000562626 STAM2O75886 525 aa11.13□□□□□ -0.63
CLK3-208ENST00000562626 FARP2O94887 1054 aaPredicted RBP11.13□□□□□ -0.63
CLK3-208ENST00000562626 CCNE2O96020 404 aa11.13□□□□□ -0.63
CLK3-208ENST00000562626 C6orf222P0C671 652 aaPredicted RBP11.13□□□□□ -0.63
CLK3-208ENST00000562626 ATP2B1P20020 1258 aa11.13□□□□□ -0.63
CLK3-208ENST00000562626 CYP3A7P24462 503 aa11.13□□□□□ -0.63
CLK3-208ENST00000562626 ZNF76P36508 570 aa11.13□□□□□ -0.63
CLK3-208ENST00000562626 USP11P51784 963 aa11.13□□□□□ -0.63
CLK3-208ENST00000562626 NKX3-2P78367 333 aa11.13□□□□□ -0.63
CLK3-208ENST00000562626 HSDL1Q3SXM5 330 aa11.13□□□□□ -0.63
CLK3-208ENST00000562626 CELF3Q5SZQ8 465 aaKnown RBP11.13□□□□□ -0.63
CLK3-208ENST00000562626 MCTP1Q6DN14 999 aa11.13□□□□□ -0.63
CLK3-208ENST00000562626 FAM173BQ6P4H8 233 aa11.13□□□□□ -0.63
CLK3-208ENST00000562626 CYFIP1Q7L576 1253 aa11.13□□□□□ -0.63
CLK3-208ENST00000562626 NEK8Q86SG6 692 aa11.13□□□□□ -0.63
CLK3-208ENST00000562626 POTEDQ86YR6 584 aa11.13□□□□□ -0.63
CLK3-208ENST00000562626 NOSTRINQ8IVI9 506 aa11.13□□□□□ -0.63
CLK3-208ENST00000562626 AFG1LQ8WV93 481 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms