RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 GH1P01241 217 aa22.05■■□□□ 1.12
VPS35-202ENST00000561713 SELPP16109 830 aa22.05■■□□□ 1.12
VPS35-202ENST00000561713 DEFB103AP81534 67 aa22.05■■□□□ 1.12
VPS35-202ENST00000561713 COL9A3Q14050 684 aaPredicted RBP22.05■■□□□ 1.12
VPS35-202ENST00000561713 WTAPQ15007 396 aa22.05■■□□□ 1.12
VPS35-202ENST00000561713 TCTN1Q2MV58 587 aa22.05■■□□□ 1.12
VPS35-202ENST00000561713 SESTD1Q86VW0 696 aa22.05■■□□□ 1.12
VPS35-202ENST00000561713 IL31RAQ8NI17 732 aa22.05■■□□□ 1.12
VPS35-202ENST00000561713 MTMR8Q96EF0 704 aa22.05■■□□□ 1.12
VPS35-202ENST00000561713 ZFP91Q96JP5 570 aaPredicted RBP22.05■■□□□ 1.12
VPS35-202ENST00000561713 PIGSQ96S52 555 aa22.05■■□□□ 1.12
VPS35-202ENST00000561713 ZBTB5O15062 677 aa22.04■■□□□ 1.12
VPS35-202ENST00000561713 HSD17B4P51659 736 aa22.04■■□□□ 1.12
VPS35-202ENST00000561713 LRRC8DQ7L1W4 858 aa22.04■■□□□ 1.12
VPS35-202ENST00000561713 NCOA7Q8NI08 942 aa22.04■■□□□ 1.12
VPS35-202ENST00000561713 GDPD5Q8WTR4 605 aa22.04■■□□□ 1.12
VPS35-202ENST00000561713 ZBED2Q9BTP6 218 aa22.04■■□□□ 1.12
VPS35-202ENST00000561713 MYL10Q9BUA6 226 aa22.04■■□□□ 1.12
VPS35-202ENST00000561713 PCDHA1Q9Y5I3 950 aa22.04■■□□□ 1.12
VPS35-202ENST00000561713 COL4A4P53420 1690 aaPredicted RBP22.04■■□□□ 1.12
VPS35-202ENST00000561713 CYTH3O43739 400 aa22.03■■□□□ 1.12
VPS35-202ENST00000561713 NBNO60934 754 aa22.03■■□□□ 1.12
VPS35-202ENST00000561713 CKBP12277 381 aa22.03■■□□□ 1.12
VPS35-202ENST00000561713 MYCLP12524 364 aaPredicted RBP22.03■■□□□ 1.12
VPS35-202ENST00000561713 CASTP20810 708 aaKnown RBP22.03■■□□□ 1.12
VPS35-202ENST00000561713 STXBP2Q15833 593 aa22.03■■□□□ 1.12
VPS35-202ENST00000561713 MB21D2Q8IYB1 491 aaPredicted RBP22.03■■□□□ 1.12
VPS35-202ENST00000561713 ERICH2A1L162 156 aa22.02■■□□□ 1.12
VPS35-202ENST00000561713 CXCL10P02778 98 aa22.02■■□□□ 1.12
VPS35-202ENST00000561713 NR3C2P08235 984 aa22.02■■□□□ 1.12
VPS35-202ENST00000561713 ZNF286BP0CG31 522 aa22.02■■□□□ 1.12
VPS35-202ENST00000561713 CNKSR3Q6P9H4 555 aa22.02■■□□□ 1.12
VPS35-202ENST00000561713 LRFN3Q9BTN0 628 aa22.02■■□□□ 1.12
VPS35-202ENST00000561713 HDAC6Q9UBN7 1215 aa22.02■■□□□ 1.12
VPS35-202ENST00000561713 GTF2IRD1Q9UHL9 959 aa22.02■■□□□ 1.12
VPS35-202ENST00000561713 MTUS1Q9ULD2 1270 aa22.02■■□□□ 1.12
VPS35-202ENST00000561713 MRVI1Q9Y6F6 885 aa22.02■■□□□ 1.12
VPS35-202ENST00000561713 RBL2Q08999 1139 aa22.01■■□□□ 1.11
VPS35-202ENST00000561713 TROAPQ12815 778 aa22.01■■□□□ 1.11
VPS35-202ENST00000561713 DGKDQ16760 1214 aa22.01■■□□□ 1.11
VPS35-202ENST00000561713 C7orf31Q8N865 590 aa22.01■■□□□ 1.11
VPS35-202ENST00000561713 KHSRPQ92945 711 aaKnown RBP eCLIP22.01■■□□□ 1.11
VPS35-202ENST00000561713 IWS1Q96ST2 819 aa22.01■■□□□ 1.11
VPS35-202ENST00000561713 PDCD2LQ9BRP1 358 aa22.01■■□□□ 1.11
VPS35-202ENST00000561713 ALG1Q9BT22 464 aa22.01■■□□□ 1.11
VPS35-202ENST00000561713 DDX41Q9UJV9 622 aaKnown RBP22.01■■□□□ 1.11
VPS35-202ENST00000561713 GJB5O95377 273 aa22■■□□□ 1.11
VPS35-202ENST00000561713 PSEN2P49810 448 aa22■■□□□ 1.11
VPS35-202ENST00000561713 SART3Q15020 963 aaKnown RBP22■■□□□ 1.11
VPS35-202ENST00000561713 FCHSD1Q86WN1 690 aa22■■□□□ 1.11
VPS35-202ENST00000561713 GPKOWQ92917 476 aaPredicted RBP eCLIP22■■□□□ 1.11
VPS35-202ENST00000561713 MAP4K1Q92918 833 aa22■■□□□ 1.11
VPS35-202ENST00000561713 RAD9AQ99638 391 aa22■■□□□ 1.11
VPS35-202ENST00000561713 MAF1Q9H063 256 aa22■■□□□ 1.11
VPS35-202ENST00000561713 RIOX1Q9H6W3 641 aa22■■□□□ 1.11
VPS35-202ENST00000561713 SUGCTQ9HAC7 445 aa22■■□□□ 1.11
VPS35-202ENST00000561713 RGS20O76081 388 aa21.99■■□□□ 1.11
VPS35-202ENST00000561713 PARNO95453 639 aaKnown RBP21.99■■□□□ 1.11
VPS35-202ENST00000561713 GHRHRQ02643 423 aa21.99■■□□□ 1.11
VPS35-202ENST00000561713 PGM5Q15124 567 aa21.99■■□□□ 1.11
VPS35-202ENST00000561713 FAM117BQ6P1L5 589 aa21.99■■□□□ 1.11
VPS35-202ENST00000561713 RAB11FIP4Q86YS3 637 aa21.99■■□□□ 1.11
VPS35-202ENST00000561713 WNT8BQ93098 351 aa21.99■■□□□ 1.11
VPS35-202ENST00000561713 EMID1Q96A84 441 aaPredicted RBP21.99■■□□□ 1.11
VPS35-202ENST00000561713 LSG1Q9H089 658 aaKnown RBP21.99■■□□□ 1.11
VPS35-202ENST00000561713 LY9Q9HBG7 655 aa21.99■■□□□ 1.11
VPS35-202ENST00000561713 LMCD1Q9NZU5 365 aa21.99■■□□□ 1.11
VPS35-202ENST00000561713 ABHD14A-ACY1A0A1B0GW23 586 aa21.98■■□□□ 1.11
VPS35-202ENST00000561713 LINC01553A4QN01 128 aa21.98■■□□□ 1.11
VPS35-202ENST00000561713 RXRAP19793 462 aa21.98■■□□□ 1.11
VPS35-202ENST00000561713 ZNF200P98182 395 aaPredicted RBP21.98■■□□□ 1.11
VPS35-202ENST00000561713 MFSD10Q14728 455 aa21.98■■□□□ 1.11
VPS35-202ENST00000561713 KIAA0753Q2KHM9 967 aa21.98■■□□□ 1.11
VPS35-202ENST00000561713 ZNF618Q5T7W0 954 aa21.98■■□□□ 1.11
VPS35-202ENST00000561713 TRAF7Q6Q0C0 670 aa21.98■■□□□ 1.11
VPS35-202ENST00000561713 CATIPQ7Z7H3 387 aa21.98■■□□□ 1.11
VPS35-202ENST00000561713 ZNF654Q8IZM8 581 aa21.98■■□□□ 1.11
VPS35-202ENST00000561713 IGDCC4Q8TDY8 1250 aa21.98■■□□□ 1.11
VPS35-202ENST00000561713 TGS1Q96RS0 853 aaKnown RBP21.98■■□□□ 1.11
VPS35-202ENST00000561713 PRC1O43663 620 aa21.97■■□□□ 1.11
VPS35-202ENST00000561713 EIF3JO75822 258 aaKnown RBP21.97■■□□□ 1.11
VPS35-202ENST00000561713 ERVK-21P61565 698 aa21.97■■□□□ 1.11
VPS35-202ENST00000561713 PTK7Q13308 1070 aa21.97■■□□□ 1.11
VPS35-202ENST00000561713 LAMC2Q13753 1193 aa21.97■■□□□ 1.11
VPS35-202ENST00000561713 IKBKEQ14164 716 aa21.97■■□□□ 1.11
VPS35-202ENST00000561713 MBTPS1Q14703 1052 aa21.97■■□□□ 1.11
VPS35-202ENST00000561713 TRIM71Q2Q1W2 868 aaKnown RBP21.97■■□□□ 1.11
VPS35-202ENST00000561713 TMEM31Q5JXX7 168 aa21.97■■□□□ 1.11
VPS35-202ENST00000561713 PPTC7Q8NI37 304 aa21.97■■□□□ 1.11
VPS35-202ENST00000561713 ESYT1Q9BSJ8 1104 aa21.97■■□□□ 1.11
VPS35-202ENST00000561713 KATNAL1Q9BW62 490 aa21.97■■□□□ 1.11
VPS35-202ENST00000561713 CD320Q9NPF0 282 aa21.97■■□□□ 1.11
VPS35-202ENST00000561713 GCOM1H8Y6P7 765 aaPredicted RBP21.96■■□□□ 1.11
VPS35-202ENST00000561713 HAS3O00219 553 aa21.96■■□□□ 1.11
VPS35-202ENST00000561713 PLEKHA8P1O95397 391 aa21.96■■□□□ 1.11
VPS35-202ENST00000561713 F2P00734 622 aa21.96■■□□□ 1.11
VPS35-202ENST00000561713 POLR2MP0CAP2 368 aa21.96■■□□□ 1.11
VPS35-202ENST00000561713 UBA1P22314 1058 aaKnown RBP21.96■■□□□ 1.11
VPS35-202ENST00000561713 HIC1Q14526 733 aa21.96■■□□□ 1.11
VPS35-202ENST00000561713 DHX37Q8IY37 1157 aaKnown RBP21.96■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms