RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 C6orf222P0C671 652 aaPredicted RBP6.8□□□□□ -1.32
VPS13C-210ENST00000561258 ENDOUP21128 410 aaKnown RBP6.8□□□□□ -1.32
VPS13C-210ENST00000561258 KCNC1P48547 511 aa6.8□□□□□ -1.32
VPS13C-210ENST00000561258 SLURP1P55000 103 aa6.8□□□□□ -1.32
VPS13C-210ENST00000561258 AUHQ13825 339 aaKnown RBP6.8□□□□□ -1.32
VPS13C-210ENST00000561258 ZC3H14Q6PJT7 736 aaKnown RBP6.8□□□□□ -1.32
VPS13C-210ENST00000561258 LRRTM3Q86VH5 581 aa6.8□□□□□ -1.32
VPS13C-210ENST00000561258 PPP1R14AQ96A00 147 aa6.8□□□□□ -1.32
VPS13C-210ENST00000561258 MRGPRX3Q96LB0 322 aa6.8□□□□□ -1.32
VPS13C-210ENST00000561258 CEP89Q96ST8 783 aa6.8□□□□□ -1.32
VPS13C-210ENST00000561258 GBP3Q9H0R5 595 aa6.8□□□□□ -1.32
VPS13C-210ENST00000561258 MAGEC2Q9UBF1 373 aaPredicted RBP6.8□□□□□ -1.32
VPS13C-210ENST00000561258 ZNF451Q9Y4E5 1061 aa6.8□□□□□ -1.32
VPS13C-210ENST00000561258 A0A1B0GTL3 188 aa6.79□□□□□ -1.32
VPS13C-210ENST00000561258 ALG1L2C9J202 215 aa6.79□□□□□ -1.32
VPS13C-210ENST00000561258 DNAJC8O75937 253 aaPredicted RBP6.79□□□□□ -1.32
VPS13C-210ENST00000561258 MAPKAPK2P49137 400 aa6.79□□□□□ -1.32
VPS13C-210ENST00000561258 EFEMP1Q12805 493 aa6.79□□□□□ -1.32
VPS13C-210ENST00000561258 SPATS1Q496A3 300 aa6.79□□□□□ -1.32
VPS13C-210ENST00000561258 NSMFQ6X4W1 530 aa6.79□□□□□ -1.32
VPS13C-210ENST00000561258 C7orf61Q8IZ16 206 aa6.79□□□□□ -1.32
VPS13C-210ENST00000561258 BVESQ8NE79 360 aa6.79□□□□□ -1.32
VPS13C-210ENST00000561258 TRIM39Q9HCM9 518 aa6.79□□□□□ -1.32
VPS13C-210ENST00000561258 WHRNQ9P202 907 aa6.79□□□□□ -1.32
VPS13C-210ENST00000561258 SFMBT1Q9UHJ3 866 aa6.79□□□□□ -1.32
VPS13C-210ENST00000561258 EMC9Q9Y3B6 208 aa6.79□□□□□ -1.32
VPS13C-210ENST00000561258 PPM1BO75688 479 aa6.78□□□□□ -1.32
VPS13C-210ENST00000561258 GSTM1P09488 218 aa6.78□□□□□ -1.32
VPS13C-210ENST00000561258 PFKLP17858 780 aa6.78□□□□□ -1.32
VPS13C-210ENST00000561258 CD247P20963 164 aa6.78□□□□□ -1.32
VPS13C-210ENST00000561258 NR1I3Q14994 352 aa6.78□□□□□ -1.32
VPS13C-210ENST00000561258 FMNL3Q8IVF7 1028 aa6.78□□□□□ -1.32
VPS13C-210ENST00000561258 TRIM59Q8IWR1 403 aa6.78□□□□□ -1.32
VPS13C-210ENST00000561258 RCC1LQ96I51 464 aaKnown RBP6.78□□□□□ -1.32
VPS13C-210ENST00000561258 SLC52A1Q9NWF4 448 aa6.78□□□□□ -1.32
VPS13C-210ENST00000561258 A0A1W2PQ27 194 aa6.77□□□□□ -1.33
VPS13C-210ENST00000561258 A0A1W2PQ64 194 aa6.77□□□□□ -1.33
VPS13C-210ENST00000561258 A0A1W2PQC6 194 aa6.77□□□□□ -1.33
VPS13C-210ENST00000561258 A0A1W2PQD8 194 aa6.77□□□□□ -1.33
VPS13C-210ENST00000561258 EYA4O95677 639 aa6.77□□□□□ -1.33
VPS13C-210ENST00000561258 PLA2G1BP04054 148 aaKnown RBP6.77□□□□□ -1.33
VPS13C-210ENST00000561258 DBHP09172 617 aa6.77□□□□□ -1.33
VPS13C-210ENST00000561258 ZXDCQ2QGD7 858 aaPredicted RBP6.77□□□□□ -1.33
VPS13C-210ENST00000561258 VWA3BQ502W6 1294 aa6.77□□□□□ -1.33
VPS13C-210ENST00000561258 CNNM4Q6P4Q7 775 aa6.77□□□□□ -1.33
VPS13C-210ENST00000561258 ADAT2Q7Z6V5 191 aaKnown RBP6.77□□□□□ -1.33
VPS13C-210ENST00000561258 ARHGEF39Q8N4T4 335 aa6.77□□□□□ -1.33
VPS13C-210ENST00000561258 NAT16Q8N8M0 369 aa6.77□□□□□ -1.33
VPS13C-210ENST00000561258 GSTCDQ8NEC7 633 aa6.77□□□□□ -1.33
VPS13C-210ENST00000561258 SLC7A14Q8TBB6 771 aa6.77□□□□□ -1.33
VPS13C-210ENST00000561258 DDX1Q92499 740 aaKnown RBP6.77□□□□□ -1.33
VPS13C-210ENST00000561258 DSCC1Q9BVC3 393 aa6.77□□□□□ -1.33
VPS13C-210ENST00000561258 SLC12A9Q9BXP2 914 aa6.77□□□□□ -1.33
VPS13C-210ENST00000561258 TMPRSS5Q9H3S3 457 aa6.77□□□□□ -1.33
VPS13C-210ENST00000561258 GP6Q9HCN6 339 aa6.77□□□□□ -1.33
VPS13C-210ENST00000561258 EID1Q9Y6B2 187 aa6.77□□□□□ -1.33
VPS13C-210ENST00000561258 NOP56O00567 594 aaKnown RBP6.76□□□□□ -1.33
VPS13C-210ENST00000561258 DLX3O60479 287 aa6.76□□□□□ -1.33
VPS13C-210ENST00000561258 GSNP06396 782 aa6.76□□□□□ -1.33
VPS13C-210ENST00000561258 ITGA4P13612 1032 aa6.76□□□□□ -1.33
VPS13C-210ENST00000561258 INSRRP14616 1297 aa6.76□□□□□ -1.33
VPS13C-210ENST00000561258 ATF2P15336 505 aa6.76□□□□□ -1.33
VPS13C-210ENST00000561258 POU3F2P20265 443 aaPredicted RBP6.76□□□□□ -1.33
VPS13C-210ENST00000561258 FBLN1P23142 703 aa6.76□□□□□ -1.33
VPS13C-210ENST00000561258 CAP1Q01518 475 aa6.76□□□□□ -1.33
VPS13C-210ENST00000561258 FAM50AQ14320 339 aaKnown RBP6.76□□□□□ -1.33
VPS13C-210ENST00000561258 HLA-DQA1Q5Y7H0 255 aa6.76□□□□□ -1.33
VPS13C-210ENST00000561258 BRAPQ7Z569 592 aa6.76□□□□□ -1.33
VPS13C-210ENST00000561258 STRA8Q7Z7C7 330 aa6.76□□□□□ -1.33
VPS13C-210ENST00000561258 RAVER1Q8IY67 606 aaKnown RBP6.76□□□□□ -1.33
VPS13C-210ENST00000561258 PPM1KQ8N3J5 372 aa6.76□□□□□ -1.33
VPS13C-210ENST00000561258 FNIP1Q8TF40 1166 aa6.76□□□□□ -1.33
VPS13C-210ENST00000561258 BORCS6Q96GS4 357 aa6.76□□□□□ -1.33
VPS13C-210ENST00000561258 SPATA25Q9BR10 227 aa6.76□□□□□ -1.33
VPS13C-210ENST00000561258 SLC52A2Q9HAB3 445 aa6.76□□□□□ -1.33
VPS13C-210ENST00000561258 CGGBP1Q9UFW8 167 aaPredicted RBP6.76□□□□□ -1.33
VPS13C-210ENST00000561258 AKT3Q9Y243 479 aa6.76□□□□□ -1.33
VPS13C-210ENST00000561258 A0A087WZG4 1122 aa6.75□□□□□ -1.33
VPS13C-210ENST00000561258 GABREP78334 506 aa6.75□□□□□ -1.33
VPS13C-210ENST00000561258 FOXO4P98177 505 aa6.75□□□□□ -1.33
VPS13C-210ENST00000561258 TARBP2Q15633 366 aaKnown RBP6.75□□□□□ -1.33
VPS13C-210ENST00000561258 WWC2Q6AWC2 1192 aa6.75□□□□□ -1.33
VPS13C-210ENST00000561258 POMZP3Q6PJE2 187 aa6.75□□□□□ -1.33
VPS13C-210ENST00000561258 CRACR2BQ8N4Y2 399 aaPredicted RBP6.75□□□□□ -1.33
VPS13C-210ENST00000561258 ADCY4Q8NFM4 1077 aa6.75□□□□□ -1.33
VPS13C-210ENST00000561258 ATL2Q8NHH9 583 aa6.75□□□□□ -1.33
VPS13C-210ENST00000561258 BTN2A2Q8WVV5 523 aa6.75□□□□□ -1.33
VPS13C-210ENST00000561258 PRR13Q9NZ81 148 aa6.75□□□□□ -1.33
VPS13C-210ENST00000561258 NDOR1Q9UHB4 597 aa6.75□□□□□ -1.33
VPS13C-210ENST00000561258 WASHC2CQ9Y4E1 1318 aa6.75□□□□□ -1.33
VPS13C-210ENST00000561258 H0Y8X5 98 aa6.74□□□□□ -1.33
VPS13C-210ENST00000561258 EFCAB14O75071 495 aa6.74□□□□□ -1.33
VPS13C-210ENST00000561258 GFRA1P56159 465 aa6.74□□□□□ -1.33
VPS13C-210ENST00000561258 ZNF445P59923 1031 aa6.74□□□□□ -1.33
VPS13C-210ENST00000561258 PUM1Q14671 1186 aaKnown RBP eCLIP6.74□□□□□ -1.33
VPS13C-210ENST00000561258 UBXN11Q5T124 520 aa6.74□□□□□ -1.33
VPS13C-210ENST00000561258 ZFYVE27Q5T4F4 411 aa6.74□□□□□ -1.33
VPS13C-210ENST00000561258 NT5DC1Q5TFE4 455 aa6.74□□□□□ -1.33
VPS13C-210ENST00000561258 BICRALQ6AI39 1079 aa6.74□□□□□ -1.33
VPS13C-210ENST00000561258 PAQR3Q6TCH7 311 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 90 ms