RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 APOBRQ0VD83 1088 aa3.5□□□□□ -1.85
SPG11-223ENST00000560858 PPP2R5DQ14738 602 aa3.5□□□□□ -1.85
SPG11-223ENST00000560858 NRN1LQ496H8 165 aa3.5□□□□□ -1.85
SPG11-223ENST00000560858 AXDND1Q5T1B0 1012 aaPredicted RBP3.5□□□□□ -1.85
SPG11-223ENST00000560858 PKN3Q6P5Z2 889 aa3.5□□□□□ -1.85
SPG11-223ENST00000560858 FAM161BQ96MY7 647 aa3.5□□□□□ -1.85
SPG11-223ENST00000560858 TRIM8Q9BZR9 551 aa3.5□□□□□ -1.85
SPG11-223ENST00000560858 BARX1Q9HBU1 254 aaPredicted RBP3.5□□□□□ -1.85
SPG11-223ENST00000560858 ZDHHC9Q9Y397 364 aa3.5□□□□□ -1.85
SPG11-223ENST00000560858 TNFRSF18Q9Y5U5 241 aa3.5□□□□□ -1.85
SPG11-223ENST00000560858 MYOM3Q5VTT5 1437 aa3.5□□□□□ -1.85
SPG11-223ENST00000560858 UACAQ9BZF9 1416 aa3.5□□□□□ -1.85
SPG11-223ENST00000560858 IQGAP2Q13576 1575 aa3.5□□□□□ -1.85
SPG11-223ENST00000560858 ITSN2Q9NZM3 1697 aa3.49□□□□□ -1.85
SPG11-223ENST00000560858 NCOA2Q15596 1464 aa3.49□□□□□ -1.85
SPG11-223ENST00000560858 DNMT1P26358 1616 aaKnown RBP3.49□□□□□ -1.85
SPG11-223ENST00000560858 ADCY10Q96PN6 1610 aa3.49□□□□□ -1.85
SPG11-223ENST00000560858 A0A087X1B8 175 aa3.49□□□□□ -1.85
SPG11-223ENST00000560858 ANKRD33BA6NCL7 494 aa3.49□□□□□ -1.85
SPG11-223ENST00000560858 C2orf71A6NGG8 1288 aa3.49□□□□□ -1.85
SPG11-223ENST00000560858 AURKAO14965 403 aa3.49□□□□□ -1.85
SPG11-223ENST00000560858 PAMP19021 973 aa3.49□□□□□ -1.85
SPG11-223ENST00000560858 CRKP46108 304 aa3.49□□□□□ -1.85
SPG11-223ENST00000560858 INHBCP55103 352 aa3.49□□□□□ -1.85
SPG11-223ENST00000560858 TDRD10Q5VZ19 366 aaKnown RBP3.49□□□□□ -1.85
SPG11-223ENST00000560858 RNF207Q6ZRF8 634 aa3.49□□□□□ -1.85
SPG11-223ENST00000560858 MILR1Q7Z6M3 343 aa3.49□□□□□ -1.85
SPG11-223ENST00000560858 CPNE8Q86YQ8 564 aa3.49□□□□□ -1.85
SPG11-223ENST00000560858 KLHL36Q8N4N3 616 aa3.49□□□□□ -1.85
SPG11-223ENST00000560858 ZG16BQ96DA0 208 aa3.49□□□□□ -1.85
SPG11-223ENST00000560858 MBD6Q96DN6 1003 aa3.49□□□□□ -1.85
SPG11-223ENST00000560858 ZNF503Q96F45 646 aa3.49□□□□□ -1.85
SPG11-223ENST00000560858 YTHDC1Q96MU7 727 aaKnown RBP3.49□□□□□ -1.85
SPG11-223ENST00000560858 CLIC6Q96NY7 704 aa3.49□□□□□ -1.85
SPG11-223ENST00000560858 CRAMP1Q96RY5 1269 aa3.49□□□□□ -1.85
SPG11-223ENST00000560858 PTPN18Q99952 460 aa3.49□□□□□ -1.85
SPG11-223ENST00000560858 YIPF4Q9BSR8 244 aa3.49□□□□□ -1.85
SPG11-223ENST00000560858 FTSJ1Q9UET6 329 aa3.49□□□□□ -1.85
SPG11-223ENST00000560858 VTI1BQ9UEU0 232 aa3.49□□□□□ -1.85
SPG11-223ENST00000560858 TIMELESSQ9UNS1 1208 aa3.49□□□□□ -1.85
SPG11-223ENST00000560858 ZFR2Q9UPR6 939 aaKnown RBP3.49□□□□□ -1.85
SPG11-223ENST00000560858 ZNF451Q9Y4E5 1061 aa3.49□□□□□ -1.85
SPG11-223ENST00000560858 KIAA0556O60303 1618 aa3.48□□□□□ -1.85
SPG11-223ENST00000560858 DENND4BO75064 1496 aaPredicted RBP3.48□□□□□ -1.85
SPG11-223ENST00000560858 NAIPQ13075 1403 aa3.48□□□□□ -1.85
SPG11-223ENST00000560858 IMPDH2P12268 514 aa3.48□□□□□ -1.85
SPG11-223ENST00000560858 ERMP1Q7Z2K6 904 aa3.48□□□□□ -1.85
SPG11-223ENST00000560858 SEC14L1Q92503 715 aa3.48□□□□□ -1.85
SPG11-223ENST00000560858 ADOQ96SZ5 270 aa3.48□□□□□ -1.85
SPG11-223ENST00000560858 ARID3AQ99856 593 aa3.48□□□□□ -1.85
SPG11-223ENST00000560858 COPRSQ9NQ92 184 aa3.48□□□□□ -1.85
SPG11-223ENST00000560858 UBP1Q9NZI7 540 aa3.48□□□□□ -1.85
SPG11-223ENST00000560858 KDM6BO15054 1643 aa3.48□□□□□ -1.85
SPG11-223ENST00000560858 GAPVD1Q14C86 1478 aa3.47□□□□□ -1.85
SPG11-223ENST00000560858 PTPRKQ15262 1439 aa3.47□□□□□ -1.85
SPG11-223ENST00000560858 C7orf72A4D263 438 aa3.47□□□□□ -1.85
SPG11-223ENST00000560858 STXBP3O00186 592 aa3.47□□□□□ -1.85
SPG11-223ENST00000560858 SGSM2O43147 1006 aa3.47□□□□□ -1.85
SPG11-223ENST00000560858 NARSO43776 548 aaKnown RBP3.47□□□□□ -1.85
SPG11-223ENST00000560858 LMO1P25800 156 aa3.47□□□□□ -1.85
SPG11-223ENST00000560858 ATXN1P54253 815 aaKnown RBP3.47□□□□□ -1.85
SPG11-223ENST00000560858 NFATC3Q12968 1075 aa3.47□□□□□ -1.85
SPG11-223ENST00000560858 HNRNPA0Q13151 305 aaKnown RBP3.47□□□□□ -1.85
SPG11-223ENST00000560858 ADAM9Q13443 819 aa3.47□□□□□ -1.85
SPG11-223ENST00000560858 DPY19L1Q2PZI1 675 aa3.47□□□□□ -1.85
SPG11-223ENST00000560858 LSM12Q3MHD2 195 aaKnown RBP3.47□□□□□ -1.85
SPG11-223ENST00000560858 USP39Q53GS9 565 aaKnown RBP3.47□□□□□ -1.85
SPG11-223ENST00000560858 FAM126BQ8IXS8 530 aa3.47□□□□□ -1.85
SPG11-223ENST00000560858 PLEKHO2Q8TD55 490 aa3.47□□□□□ -1.85
SPG11-223ENST00000560858 NKD1Q969G9 470 aa3.47□□□□□ -1.85
SPG11-223ENST00000560858 NAF1Q96HR8 494 aaKnown RBP3.47□□□□□ -1.85
SPG11-223ENST00000560858 TM9SF2Q99805 663 aa3.47□□□□□ -1.85
SPG11-223ENST00000560858 SEC61A2Q9H9S3 476 aa3.47□□□□□ -1.85
SPG11-223ENST00000560858 FAM86C1Q9NVL1 165 aa3.47□□□□□ -1.85
SPG11-223ENST00000560858 WHRNQ9P202 907 aa3.47□□□□□ -1.85
SPG11-223ENST00000560858 BACE2Q9Y5Z0 518 aa3.47□□□□□ -1.85
SPG11-223ENST00000560858 RAPGEF6Q8TEU7 1601 aa3.47□□□□□ -1.85
SPG11-223ENST00000560858 TEX14Q8IWB6 1497 aa3.47□□□□□ -1.85
SPG11-223ENST00000560858 MIA2Q96PC5 1412 aa3.46□□□□□ -1.86
SPG11-223ENST00000560858 EPRSP07814 1512 aaKnown RBP3.46□□□□□ -1.86
SPG11-223ENST00000560858 KIF14Q15058 1648 aa3.46□□□□□ -1.86
SPG11-223ENST00000560858 VAMP4O75379 141 aa3.46□□□□□ -1.86
SPG11-223ENST00000560858 STAT5AP42229 794 aa3.46□□□□□ -1.86
SPG11-223ENST00000560858 MLLT6P55198 1093 aaPredicted RBP3.46□□□□□ -1.86
SPG11-223ENST00000560858 PTH1RQ03431 593 aa3.46□□□□□ -1.86
SPG11-223ENST00000560858 KCNA1Q09470 495 aa3.46□□□□□ -1.86
SPG11-223ENST00000560858 CR1LQ2VPA4 569 aa3.46□□□□□ -1.86
SPG11-223ENST00000560858 IGFL4Q6B9Z1 124 aa3.46□□□□□ -1.86
SPG11-223ENST00000560858 DPY19L2P1Q6NXN4 242 aa3.46□□□□□ -1.86
SPG11-223ENST00000560858 ADAT2Q7Z6V5 191 aaKnown RBP3.46□□□□□ -1.86
SPG11-223ENST00000560858 PPFIBP1Q86W92 1011 aa3.46□□□□□ -1.86
SPG11-223ENST00000560858 SLITRK4Q8IW52 837 aa3.46□□□□□ -1.86
SPG11-223ENST00000560858 TAB3Q8N5C8 712 aaPredicted RBP3.46□□□□□ -1.86
SPG11-223ENST00000560858 GIMAP8Q8ND71 665 aaPredicted RBP3.46□□□□□ -1.86
SPG11-223ENST00000560858 WRNIP1Q96S55 665 aa3.46□□□□□ -1.86
SPG11-223ENST00000560858 MARCH2Q9P0N8 246 aa3.46□□□□□ -1.86
SPG11-223ENST00000560858 CROTQ9UKG9 612 aa3.46□□□□□ -1.86
SPG11-223ENST00000560858 E9PCH4 1651 aa3.46□□□□□ -1.86
SPG11-223ENST00000560858 CDC42BPAQ5VT25 1732 aa3.45□□□□□ -1.86
SPG11-223ENST00000560858 C22orf46C9J442 243 aa3.45□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms