RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 POLA2Q14181 598 aa14.3□□□□□ -0.12
CSPG4P11-201ENST00000560634 SUDS3Q9H7L9 328 aaPredicted RBP14.3□□□□□ -0.12
CSPG4P11-201ENST00000560634 CCPG1Q9ULG6 757 aa14.3□□□□□ -0.12
CSPG4P11-201ENST00000560634 IQCB1Q15051 598 aa14.3□□□□□ -0.12
CSPG4P11-201ENST00000560634 ZKSCAN8Q15776 578 aaPredicted RBP14.3□□□□□ -0.12
CSPG4P11-201ENST00000560634 CYP4F22Q6NT55 531 aa14.3□□□□□ -0.12
CSPG4P11-201ENST00000560634 VSTM4Q8IW00 320 aa14.3□□□□□ -0.12
CSPG4P11-201ENST00000560634 FAM193BQ96PV7 902 aaPredicted RBP14.3□□□□□ -0.12
CSPG4P11-201ENST00000560634 TTC1Q99614 292 aa14.3□□□□□ -0.12
CSPG4P11-201ENST00000560634 GNGT2O14610 69 aa14.3□□□□□ -0.12
CSPG4P11-201ENST00000560634 KIF23Q02241 960 aaPredicted RBP14.3□□□□□ -0.12
CSPG4P11-201ENST00000560634 CDC37Q16543 378 aaPredicted RBP14.3□□□□□ -0.12
CSPG4P11-201ENST00000560634 C6orf118Q5T5N4 469 aa14.3□□□□□ -0.12
CSPG4P11-201ENST00000560634 FLAD1Q8NFF5 587 aa14.3□□□□□ -0.12
CSPG4P11-201ENST00000560634 IL17REQ8NFR9 667 aa14.3□□□□□ -0.12
CSPG4P11-201ENST00000560634 ATP6V1E2Q96A05 226 aa14.3□□□□□ -0.12
CSPG4P11-201ENST00000560634 SERPINI1Q99574 410 aa14.3□□□□□ -0.12
CSPG4P11-201ENST00000560634 ANGPTL2Q9UKU9 493 aa14.3□□□□□ -0.12
CSPG4P11-201ENST00000560634 PTPRTO14522 1441 aa14.3□□□□□ -0.12
CSPG4P11-201ENST00000560634 ZNF233A6NK53 670 aa14.3□□□□□ -0.12
CSPG4P11-201ENST00000560634 CCDC188H7C350 402 aa14.3□□□□□ -0.12
CSPG4P11-201ENST00000560634 SEC31AO94979 1220 aaKnown RBP14.3□□□□□ -0.12
CSPG4P11-201ENST00000560634 CYP21A2P08686 494 aa14.3□□□□□ -0.12
CSPG4P11-201ENST00000560634 IFNAR1P17181 557 aa14.3□□□□□ -0.12
CSPG4P11-201ENST00000560634 CUL1Q13616 776 aa14.3□□□□□ -0.12
CSPG4P11-201ENST00000560634 TTC19Q6DKK2 380 aaPredicted RBP14.3□□□□□ -0.12
CSPG4P11-201ENST00000560634 MCUQ8NE86 351 aa14.3□□□□□ -0.12
CSPG4P11-201ENST00000560634 ANKRD36BP1Q96IX9 119 aa14.3□□□□□ -0.12
CSPG4P11-201ENST00000560634 PARD6BQ9BYG5 372 aa14.3□□□□□ -0.12
CSPG4P11-201ENST00000560634 SERPING1P05155 500 aa14.29□□□□□ -0.12
CSPG4P11-201ENST00000560634 ARL4AP40617 200 aa14.29□□□□□ -0.12
CSPG4P11-201ENST00000560634 RNF169Q8NCN4 708 aa14.29□□□□□ -0.12
CSPG4P11-201ENST00000560634 ZC3H15Q8WU90 426 aaKnown RBP14.29□□□□□ -0.12
CSPG4P11-201ENST00000560634 MED7O43513 233 aa14.29□□□□□ -0.12
CSPG4P11-201ENST00000560634 ABL1P00519 1130 aa14.29□□□□□ -0.12
CSPG4P11-201ENST00000560634 DEUP1Q05D60 604 aa14.29□□□□□ -0.12
CSPG4P11-201ENST00000560634 PRKG1Q13976 671 aa14.29□□□□□ -0.12
CSPG4P11-201ENST00000560634 ABCB5Q2M3G0 1257 aa14.29□□□□□ -0.12
CSPG4P11-201ENST00000560634 TMTC4Q5T4D3 741 aa14.29□□□□□ -0.12
CSPG4P11-201ENST00000560634 TAB3Q8N5C8 712 aaPredicted RBP14.29□□□□□ -0.12
CSPG4P11-201ENST00000560634 CTTNBP2Q8WZ74 1663 aa14.29□□□□□ -0.12
CSPG4P11-201ENST00000560634 NR1D1P20393 614 aa14.29□□□□□ -0.12
CSPG4P11-201ENST00000560634 CDHR1Q96JP9 859 aa14.29□□□□□ -0.12
CSPG4P11-201ENST00000560634 SMYD2Q9NRG4 433 aa14.29□□□□□ -0.12
CSPG4P11-201ENST00000560634 NUB1Q9Y5A7 615 aa14.29□□□□□ -0.12
CSPG4P11-201ENST00000560634 WDR62O43379 1518 aa14.29□□□□□ -0.12
CSPG4P11-201ENST00000560634 NDUFA10O95299 355 aa14.29□□□□□ -0.12
CSPG4P11-201ENST00000560634 ACTN1P12814 892 aa14.29□□□□□ -0.12
CSPG4P11-201ENST00000560634 GUCY2CP25092 1073 aa14.29□□□□□ -0.12
CSPG4P11-201ENST00000560634 CHRNDQ07001 517 aa14.29□□□□□ -0.12
CSPG4P11-201ENST00000560634 LRRC24Q50LG9 513 aa14.29□□□□□ -0.12
CSPG4P11-201ENST00000560634 FAM47CQ5HY64 1035 aa14.29□□□□□ -0.12
CSPG4P11-201ENST00000560634 NRBF2Q96F24 287 aa14.29□□□□□ -0.12
CSPG4P11-201ENST00000560634 ORAI2Q96SN7 254 aa14.29□□□□□ -0.12
CSPG4P11-201ENST00000560634 FMO2Q99518 471 aa14.29□□□□□ -0.12
CSPG4P11-201ENST00000560634 PAGR1Q9BTK6 254 aa14.29□□□□□ -0.12
CSPG4P11-201ENST00000560634 MAN1B1Q9UKM7 699 aa14.29□□□□□ -0.12
CSPG4P11-201ENST00000560634 MAP3K7O43318 606 aa14.28□□□□□ -0.12
CSPG4P11-201ENST00000560634 RPSAP08865 295 aaKnown RBP14.28□□□□□ -0.12
CSPG4P11-201ENST00000560634 PHKG2P15735 406 aa14.28□□□□□ -0.12
CSPG4P11-201ENST00000560634 ADCY2Q08462 1091 aa14.28□□□□□ -0.12
CSPG4P11-201ENST00000560634 TMED2Q15363 201 aa14.28□□□□□ -0.12
CSPG4P11-201ENST00000560634 ADCK5Q3MIX3 580 aa14.28□□□□□ -0.12
CSPG4P11-201ENST00000560634 KRT80Q6KB66 452 aa14.28□□□□□ -0.12
CSPG4P11-201ENST00000560634 DNAJC24Q6P3W2 148 aa14.28□□□□□ -0.12
CSPG4P11-201ENST00000560634 SRRM1Q8IYB3 904 aaKnown RBP14.28□□□□□ -0.12
CSPG4P11-201ENST00000560634 FAM149B1Q96BN6 582 aa14.28□□□□□ -0.12
CSPG4P11-201ENST00000560634 TYW5A2RUC4 315 aaKnown RBP14.28□□□□□ -0.12
CSPG4P11-201ENST00000560634 E2F5Q15329 346 aa14.28□□□□□ -0.12
CSPG4P11-201ENST00000560634 DNAAF3Q8N9W5 541 aa14.28□□□□□ -0.12
CSPG4P11-201ENST00000560634 ZNF526Q8TF50 670 aaPredicted RBP14.28□□□□□ -0.12
CSPG4P11-201ENST00000560634 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.28□□□□□ -0.12
CSPG4P11-201ENST00000560634 RPS6KC1Q96S38 1066 aa14.28□□□□□ -0.12
CSPG4P11-201ENST00000560634 SPTLC3Q9NUV7 552 aa14.28□□□□□ -0.12
CSPG4P11-201ENST00000560634 EIF4G3O43432 1585 aaKnown RBP14.28□□□□□ -0.12
CSPG4P11-201ENST00000560634 GLE1Q53GS7 698 aaKnown RBP14.28□□□□□ -0.12
CSPG4P11-201ENST00000560634 HIBCHQ6NVY1 386 aaPredicted RBP14.28□□□□□ -0.12
CSPG4P11-201ENST00000560634 C11orf57Q6ZUT1 292 aaPredicted RBP14.28□□□□□ -0.12
CSPG4P11-201ENST00000560634 RSRC2Q7L4I2 434 aaKnown RBP14.28□□□□□ -0.12
CSPG4P11-201ENST00000560634 PDIK1LQ8N165 341 aa14.28□□□□□ -0.12
CSPG4P11-201ENST00000560634 EEF2KMTQ96G04 330 aa14.28□□□□□ -0.12
CSPG4P11-201ENST00000560634 MRPL46Q9H2W6 279 aaKnown RBP14.28□□□□□ -0.12
CSPG4P11-201ENST00000560634 DBNLQ9UJU6 430 aaKnown RBP14.28□□□□□ -0.12
CSPG4P11-201ENST00000560634 KRT1P04264 644 aa14.27□□□□□ -0.12
CSPG4P11-201ENST00000560634 EIF4A3P38919 411 aaKnown RBP14.27□□□□□ -0.12
CSPG4P11-201ENST00000560634 LRRC63Q05C16 580 aa14.27□□□□□ -0.12
CSPG4P11-201ENST00000560634 ALCAMQ13740 583 aa14.27□□□□□ -0.12
CSPG4P11-201ENST00000560634 CASP8Q14790 479 aa14.27□□□□□ -0.12
CSPG4P11-201ENST00000560634 TAF11Q15544 211 aa14.27□□□□□ -0.12
CSPG4P11-201ENST00000560634 ATG16L1Q676U5 607 aa14.27□□□□□ -0.12
CSPG4P11-201ENST00000560634 ZNF449Q6P9G9 518 aa14.27□□□□□ -0.12
CSPG4P11-201ENST00000560634 PPP4R3CPQ6ZMV5 832 aa14.27□□□□□ -0.12
CSPG4P11-201ENST00000560634 C4orf50Q6ZRC1 276 aa14.27□□□□□ -0.12
CSPG4P11-201ENST00000560634 PCGF5Q86SE9 256 aa14.27□□□□□ -0.12
CSPG4P11-201ENST00000560634 LRRC43Q8N309 656 aa14.27□□□□□ -0.12
CSPG4P11-201ENST00000560634 SKA2Q8WVK7 121 aaPredicted RBP14.27□□□□□ -0.12
CSPG4P11-201ENST00000560634 NUDCD1Q96RS6 583 aa14.27□□□□□ -0.12
CSPG4P11-201ENST00000560634 HINFPQ9BQA5 517 aa14.27□□□□□ -0.12
CSPG4P11-201ENST00000560634 LEMD3Q9Y2U8 911 aa14.27□□□□□ -0.12
CSPG4P11-201ENST00000560634 PPME1Q9Y570 386 aa14.27□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms