RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 MYH6P13533 1939 aa20.84■□□□□ 0.93
TSPAN3-208ENST00000560514 NCK2O43639 380 aa20.83■□□□□ 0.93
TSPAN3-208ENST00000560514 UPP2O95045 317 aa20.83■□□□□ 0.93
TSPAN3-208ENST00000560514 SNHG28P0DPA3 235 aa20.83■□□□□ 0.93
TSPAN3-208ENST00000560514 ZNF200P98182 395 aaPredicted RBP20.83■□□□□ 0.93
TSPAN3-208ENST00000560514 ZP2Q05996 745 aa20.83■□□□□ 0.93
TSPAN3-208ENST00000560514 MBTPS1Q14703 1052 aa20.83■□□□□ 0.93
TSPAN3-208ENST00000560514 TRAF7Q6Q0C0 670 aa20.83■□□□□ 0.93
TSPAN3-208ENST00000560514 MFSD6Q6ZSS7 791 aa20.83■□□□□ 0.93
TSPAN3-208ENST00000560514 ADHFE1Q8IWW8 467 aa20.83■□□□□ 0.93
TSPAN3-208ENST00000560514 SEPT8Q92599 483 aa20.83■□□□□ 0.93
TSPAN3-208ENST00000560514 TBC1D5Q92609 795 aa20.83■□□□□ 0.93
TSPAN3-208ENST00000560514 UBA5Q9GZZ9 404 aa20.83■□□□□ 0.93
TSPAN3-208ENST00000560514 HELLSQ9NRZ9 838 aa20.83■□□□□ 0.93
TSPAN3-208ENST00000560514 ZBTB47Q9UFB7 747 aaPredicted RBP20.83■□□□□ 0.93
TSPAN3-208ENST00000560514 NLRC5Q86WI3 1866 aa20.82■□□□□ 0.92
TSPAN3-208ENST00000560514 HAS3O00219 553 aa20.82■□□□□ 0.92
TSPAN3-208ENST00000560514 DHX16O60231 1041 aaKnown RBP20.82■□□□□ 0.92
TSPAN3-208ENST00000560514 FGAP02671 866 aa20.82■□□□□ 0.92
TSPAN3-208ENST00000560514 EIF2AK2P19525 551 aaKnown RBP20.82■□□□□ 0.92
TSPAN3-208ENST00000560514 MX1P20591 662 aa20.82■□□□□ 0.92
TSPAN3-208ENST00000560514 TMEM192Q8IY95 271 aa20.82■□□□□ 0.92
TSPAN3-208ENST00000560514 WNT8BQ93098 351 aa20.82■□□□□ 0.92
TSPAN3-208ENST00000560514 POP1Q99575 1024 aaKnown RBP20.82■□□□□ 0.92
TSPAN3-208ENST00000560514 MRPL11Q9Y3B7 192 aaKnown RBP20.82■□□□□ 0.92
TSPAN3-208ENST00000560514 PPFIA4O75335 1185 aa20.81■□□□□ 0.92
TSPAN3-208ENST00000560514 PCP11498 1178 aaKnown RBP20.81■□□□□ 0.92
TSPAN3-208ENST00000560514 PLEKHG4Q58EX7 1191 aa20.81■□□□□ 0.92
TSPAN3-208ENST00000560514 C20orf194Q5TEA3 1177 aa20.81■□□□□ 0.92
TSPAN3-208ENST00000560514 FBXO11Q86XK2 927 aa20.81■□□□□ 0.92
TSPAN3-208ENST00000560514 COL20A1Q9P218 1284 aa20.81■□□□□ 0.92
TSPAN3-208ENST00000560514 NR3C2P08235 984 aa20.8■□□□□ 0.92
TSPAN3-208ENST00000560514 HSPD1P10809 573 aaKnown RBP20.8■□□□□ 0.92
TSPAN3-208ENST00000560514 HAND2P61296 217 aa20.8■□□□□ 0.92
TSPAN3-208ENST00000560514 KCNV1Q6PIU1 500 aa20.8■□□□□ 0.92
TSPAN3-208ENST00000560514 HFE2Q6ZVN8 426 aa20.8■□□□□ 0.92
TSPAN3-208ENST00000560514 SERINC5Q86VE9 423 aa20.8■□□□□ 0.92
TSPAN3-208ENST00000560514 OTUD7AQ8TE49 926 aaPredicted RBP20.8■□□□□ 0.92
TSPAN3-208ENST00000560514 ATP6V0A1Q93050 837 aa20.8■□□□□ 0.92
TSPAN3-208ENST00000560514 TOP1MTQ969P6 601 aa20.8■□□□□ 0.92
TSPAN3-208ENST00000560514 EVI5LQ96CN4 794 aa20.8■□□□□ 0.92
TSPAN3-208ENST00000560514 SPATA33Q96N06 139 aa20.8■□□□□ 0.92
TSPAN3-208ENST00000560514 CPVLQ9H3G5 476 aa20.8■□□□□ 0.92
TSPAN3-208ENST00000560514 RNF41Q9H4P4 317 aaPredicted RBP20.8■□□□□ 0.92
TSPAN3-208ENST00000560514 C17orf102A2RUQ5 167 aa20.79■□□□□ 0.92
TSPAN3-208ENST00000560514 C19orf67A6NJJ6 358 aa20.79■□□□□ 0.92
TSPAN3-208ENST00000560514 ESR2Q92731 530 aa20.79■□□□□ 0.92
TSPAN3-208ENST00000560514 PXMP2Q9NR77 195 aa20.79■□□□□ 0.92
TSPAN3-208ENST00000560514 RALGAPA2Q2PPJ7 1873 aa20.79■□□□□ 0.92
TSPAN3-208ENST00000560514 SORBS3O60504 671 aa20.78■□□□□ 0.92
TSPAN3-208ENST00000560514 CFBP00751 764 aa20.78■□□□□ 0.92
TSPAN3-208ENST00000560514 MYCLP12524 364 aaPredicted RBP20.78■□□□□ 0.92
TSPAN3-208ENST00000560514 MCMDC2Q4G0Z9 681 aa20.78■□□□□ 0.92
TSPAN3-208ENST00000560514 RPAINQ86UA6 219 aa20.78■□□□□ 0.92
TSPAN3-208ENST00000560514 ADGRF4Q8IZF3 695 aa20.78■□□□□ 0.92
TSPAN3-208ENST00000560514 ZKSCAN3Q9BRR0 538 aa20.78■□□□□ 0.92
TSPAN3-208ENST00000560514 IFIH1Q9BYX4 1025 aaKnown RBP20.78■□□□□ 0.92
TSPAN3-208ENST00000560514 KAT14Q9H8E8 782 aa20.78■□□□□ 0.92
TSPAN3-208ENST00000560514 CTNNB1P35222 781 aa20.77■□□□□ 0.92
TSPAN3-208ENST00000560514 IRS1P35568 1242 aa20.77■□□□□ 0.92
TSPAN3-208ENST00000560514 MKRN4PQ13434 485 aaPredicted RBP20.77■□□□□ 0.92
TSPAN3-208ENST00000560514 CCDC178Q5BJE1 867 aa20.77■□□□□ 0.92
TSPAN3-208ENST00000560514 MYSM1Q5VVJ2 828 aa20.77■□□□□ 0.92
TSPAN3-208ENST00000560514 IQCA1Q86XH1 822 aa20.77■□□□□ 0.92
TSPAN3-208ENST00000560514 DGKHQ86XP1 1220 aa20.77■□□□□ 0.92
TSPAN3-208ENST00000560514 FIBCD1Q8N539 461 aa20.77■□□□□ 0.92
TSPAN3-208ENST00000560514 PNMA1Q8ND90 353 aa20.77■□□□□ 0.92
TSPAN3-208ENST00000560514 MLXIPQ9HAP2 919 aa20.77■□□□□ 0.92
TSPAN3-208ENST00000560514 WDFY4Q6ZS81 3184 aa20.77■□□□□ 0.92
TSPAN3-208ENST00000560514 MYO7AQ13402 2215 aa20.77■□□□□ 0.91
TSPAN3-208ENST00000560514 CAND2O75155 1236 aa20.76■□□□□ 0.91
TSPAN3-208ENST00000560514 GGPS1O95749 300 aa20.76■□□□□ 0.91
TSPAN3-208ENST00000560514 CTSHP09668 335 aa20.76■□□□□ 0.91
TSPAN3-208ENST00000560514 HOXD8P13378 290 aaPredicted RBP20.76■□□□□ 0.91
TSPAN3-208ENST00000560514 COL19A1Q14993 1142 aa20.76■□□□□ 0.91
TSPAN3-208ENST00000560514 CLUL1Q15846 466 aa20.76■□□□□ 0.91
TSPAN3-208ENST00000560514 QRICH1Q2TAL8 776 aa20.76■□□□□ 0.91
TSPAN3-208ENST00000560514 HSDL1Q3SXM5 330 aa20.76■□□□□ 0.91
TSPAN3-208ENST00000560514 ASPRV1Q53RT3 343 aa20.76■□□□□ 0.91
TSPAN3-208ENST00000560514 CELF3Q5SZQ8 465 aaKnown RBP20.76■□□□□ 0.91
TSPAN3-208ENST00000560514 APBB2Q92870 758 aa20.76■□□□□ 0.91
TSPAN3-208ENST00000560514 IL17RAQ96F46 866 aa20.76■□□□□ 0.91
TSPAN3-208ENST00000560514 SNX27Q96L92 541 aa20.76■□□□□ 0.91
TSPAN3-208ENST00000560514 C11orf84Q9BUA3 381 aaPredicted RBP20.76■□□□□ 0.91
TSPAN3-208ENST00000560514 VAT1LQ9HCJ6 419 aa20.76■□□□□ 0.91
TSPAN3-208ENST00000560514 MUTYHQ9UIF7 546 aa20.76■□□□□ 0.91
TSPAN3-208ENST00000560514 RWDD3Q9Y3V2 267 aa20.76■□□□□ 0.91
TSPAN3-208ENST00000560514 ZNF318Q5VUA4 2279 aa20.76■□□□□ 0.91
TSPAN3-208ENST00000560514 ZMYM6O95789 1325 aa20.76■□□□□ 0.91
TSPAN3-208ENST00000560514 GNAT1P11488 350 aa20.75■□□□□ 0.91
TSPAN3-208ENST00000560514 HIC1Q14526 733 aa20.75■□□□□ 0.91
TSPAN3-208ENST00000560514 SMAD2Q15796 467 aaKnown RBP20.75■□□□□ 0.91
TSPAN3-208ENST00000560514 LMAN2LQ9H0V9 348 aa20.75■□□□□ 0.91
TSPAN3-208ENST00000560514 CCDC171Q6TFL3 1326 aa20.75■□□□□ 0.91
TSPAN3-208ENST00000560514 COL4A6Q14031 1691 aa20.74■□□□□ 0.91
TSPAN3-208ENST00000560514 H3BRB1 525 aa20.74■□□□□ 0.91
TSPAN3-208ENST00000560514 RBAK-RBAKDNI3L0D1 243 aa20.74■□□□□ 0.91
TSPAN3-208ENST00000560514 RB1P06400 928 aa20.74■□□□□ 0.91
TSPAN3-208ENST00000560514 PARP1P09874 1014 aaKnown RBP20.74■□□□□ 0.91
TSPAN3-208ENST00000560514 HERC4Q5GLZ8 1057 aaPredicted RBP20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms