RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 EXOC2Q96KP1 924 aa5.65□□□□□ -1.5
VPS13C-207ENST00000558919 BCAS3Q9H6U6 928 aa5.65□□□□□ -1.5
VPS13C-207ENST00000558919 PALD1Q9ULE6 856 aa5.65□□□□□ -1.5
VPS13C-207ENST00000558919 CDK11AQ9UQ88 783 aaPredicted RBP5.65□□□□□ -1.5
VPS13C-207ENST00000558919 CCDC163A0A0D9SF12 145 aa5.64□□□□□ -1.51
VPS13C-207ENST00000558919 AQP7O14520 342 aa5.64□□□□□ -1.51
VPS13C-207ENST00000558919 MAFKO60675 156 aa5.64□□□□□ -1.51
VPS13C-207ENST00000558919 TADA3O75528 432 aa5.64□□□□□ -1.51
VPS13C-207ENST00000558919 C6orf222P0C671 652 aaPredicted RBP5.64□□□□□ -1.51
VPS13C-207ENST00000558919 GRK2P25098 689 aa5.64□□□□□ -1.51
VPS13C-207ENST00000558919 GRK3P35626 688 aa5.64□□□□□ -1.51
VPS13C-207ENST00000558919 MC3RP41968 323 aa5.64□□□□□ -1.51
VPS13C-207ENST00000558919 AFF3P51826 1226 aaKnown RBP5.64□□□□□ -1.51
VPS13C-207ENST00000558919 GABREP78334 506 aa5.64□□□□□ -1.51
VPS13C-207ENST00000558919 STEAP3Q658P3 488 aa5.64□□□□□ -1.51
VPS13C-207ENST00000558919 CYP4F22Q6NT55 531 aa5.64□□□□□ -1.51
VPS13C-207ENST00000558919 ETV3LQ6ZN32 361 aa5.64□□□□□ -1.51
VPS13C-207ENST00000558919 LCNL1Q6ZST4 164 aa5.64□□□□□ -1.51
VPS13C-207ENST00000558919 PHOSPHO1Q8TCT1 267 aa5.64□□□□□ -1.51
VPS13C-207ENST00000558919 THAP3Q8WTV1 239 aaPredicted RBP5.64□□□□□ -1.51
VPS13C-207ENST00000558919 PCDH18Q9HCL0 1135 aa5.64□□□□□ -1.51
VPS13C-207ENST00000558919 NGRNQ9NPE2 291 aaKnown RBP5.64□□□□□ -1.51
VPS13C-207ENST00000558919 MRPS23Q9Y3D9 190 aaKnown RBP5.64□□□□□ -1.51
VPS13C-207ENST00000558919 KRIT1O00522 736 aa5.63□□□□□ -1.51
VPS13C-207ENST00000558919 NAT1P18440 290 aa5.63□□□□□ -1.51
VPS13C-207ENST00000558919 LIMS1P48059 325 aa5.63□□□□□ -1.51
VPS13C-207ENST00000558919 HTRA3P83110 453 aa5.63□□□□□ -1.51
VPS13C-207ENST00000558919 SPOCD1Q6ZMY3 1216 aa5.63□□□□□ -1.51
VPS13C-207ENST00000558919 FAM126BQ8IXS8 530 aa5.63□□□□□ -1.51
VPS13C-207ENST00000558919 ZSWIM2Q8NEG5 633 aa5.63□□□□□ -1.51
VPS13C-207ENST00000558919 SMARCC2Q8TAQ2 1214 aa5.63□□□□□ -1.51
VPS13C-207ENST00000558919 PWWP2AQ96N64 755 aa5.63□□□□□ -1.51
VPS13C-207ENST00000558919 JAM3Q9BX67 310 aa5.63□□□□□ -1.51
VPS13C-207ENST00000558919 SMOC1Q9H4F8 434 aa5.63□□□□□ -1.51
VPS13C-207ENST00000558919 SLC6A20Q9NP91 592 aa5.63□□□□□ -1.51
VPS13C-207ENST00000558919 PPARGC1AQ9UBK2 798 aaKnown RBP5.63□□□□□ -1.51
VPS13C-207ENST00000558919 ASXL2Q76L83 1435 aa5.63□□□□□ -1.51
VPS13C-207ENST00000558919 FAM47E-STBD1D6RA91 191 aa5.62□□□□□ -1.51
VPS13C-207ENST00000558919 SOD2P04179 222 aa5.62□□□□□ -1.51
VPS13C-207ENST00000558919 BMS1Q14692 1282 aaKnown RBP5.62□□□□□ -1.51
VPS13C-207ENST00000558919 C2orf27AQ580R0 203 aa5.62□□□□□ -1.51
VPS13C-207ENST00000558919 OTOP3Q7RTS5 596 aa5.62□□□□□ -1.51
VPS13C-207ENST00000558919 ZC3H18Q86VM9 953 aaKnown RBP5.62□□□□□ -1.51
VPS13C-207ENST00000558919 LILRB2Q8N423 598 aa5.62□□□□□ -1.51
VPS13C-207ENST00000558919 MRFAP1L1Q96HT8 127 aa5.62□□□□□ -1.51
VPS13C-207ENST00000558919 ALG1Q9BT22 464 aa5.62□□□□□ -1.51
VPS13C-207ENST00000558919 LNPKQ9C0E8 428 aa5.62□□□□□ -1.51
VPS13C-207ENST00000558919 TRAF6Q9Y4K3 522 aa5.62□□□□□ -1.51
VPS13C-207ENST00000558919 PCDHB4Q9Y5E5 795 aa5.62□□□□□ -1.51
VPS13C-207ENST00000558919 PMF1-BGLAPU3KQ54 211 aa5.62□□□□□ -1.51
VPS13C-207ENST00000558919 TCRBV5S2A0A599 114 aa5.61□□□□□ -1.51
VPS13C-207ENST00000558919 PLA2G1BP04054 148 aaKnown RBP5.61□□□□□ -1.51
VPS13C-207ENST00000558919 C8BP07358 591 aa5.61□□□□□ -1.51
VPS13C-207ENST00000558919 CYP2C8P10632 490 aa5.61□□□□□ -1.51
VPS13C-207ENST00000558919 SPIRE1Q08AE8 756 aa5.61□□□□□ -1.51
VPS13C-207ENST00000558919 CCDC144BQ3MJ40 725 aa5.61□□□□□ -1.51
VPS13C-207ENST00000558919 HABP4Q5JVS0 413 aaKnown RBP5.61□□□□□ -1.51
VPS13C-207ENST00000558919 LINC01356Q8N9X3 169 aa5.61□□□□□ -1.51
VPS13C-207ENST00000558919 FNIP1Q8TF40 1166 aa5.61□□□□□ -1.51
VPS13C-207ENST00000558919 ZSWIM4Q9H7M6 989 aa5.61□□□□□ -1.51
VPS13C-207ENST00000558919 MYOTQ9UBF9 498 aa5.61□□□□□ -1.51
VPS13C-207ENST00000558919 NUB1Q9Y5A7 615 aa5.61□□□□□ -1.51
VPS13C-207ENST00000558919 ADAMTS20P59510 1910 aa5.6□□□□□ -1.51
VPS13C-207ENST00000558919 WNT9AO14904 365 aa5.6□□□□□ -1.51
VPS13C-207ENST00000558919 EFCAB14O75071 495 aa5.6□□□□□ -1.51
VPS13C-207ENST00000558919 GNAT1P11488 350 aa5.6□□□□□ -1.51
VPS13C-207ENST00000558919 PAK1Q13153 545 aa5.6□□□□□ -1.51
VPS13C-207ENST00000558919 VWA3BQ502W6 1294 aa5.6□□□□□ -1.51
VPS13C-207ENST00000558919 FBLN7Q53RD9 439 aa5.6□□□□□ -1.51
VPS13C-207ENST00000558919 CD300LDQ6UXZ3 194 aa5.6□□□□□ -1.51
VPS13C-207ENST00000558919 SAPCD2Q86UD0 394 aa5.6□□□□□ -1.51
VPS13C-207ENST00000558919 MTDHQ86UE4 582 aaKnown RBP5.6□□□□□ -1.51
VPS13C-207ENST00000558919 TRIM48Q8IWZ4 208 aa5.6□□□□□ -1.51
VPS13C-207ENST00000558919 LINC00482Q8N8I6 264 aa5.6□□□□□ -1.51
VPS13C-207ENST00000558919 ARRDC4Q8NCT1 418 aa5.6□□□□□ -1.51
VPS13C-207ENST00000558919 UHMK1Q8TAS1 419 aaKnown RBP5.6□□□□□ -1.51
VPS13C-207ENST00000558919 PIP4K2CQ8TBX8 421 aa5.6□□□□□ -1.51
VPS13C-207ENST00000558919 DDX11Q96FC9 970 aa5.6□□□□□ -1.51
VPS13C-207ENST00000558919 TOE1Q96GM8 510 aaKnown RBP5.6□□□□□ -1.51
VPS13C-207ENST00000558919 PDGFDQ9GZP0 370 aaPredicted RBP5.6□□□□□ -1.51
VPS13C-207ENST00000558919 IPPKQ9H8X2 491 aa5.6□□□□□ -1.51
VPS13C-207ENST00000558919 DTLQ9NZJ0 730 aa5.6□□□□□ -1.51
VPS13C-207ENST00000558919 ASH2LQ9UBL3 628 aa5.6□□□□□ -1.51
VPS13C-207ENST00000558919 PTCH2Q9Y6C5 1203 aa5.6□□□□□ -1.51
VPS13C-207ENST00000558919 SH3D21A4FU49 640 aa5.59□□□□□ -1.51
VPS13C-207ENST00000558919 ARVCFO00192 962 aa5.59□□□□□ -1.51
VPS13C-207ENST00000558919 NKX3-2P78367 333 aa5.59□□□□□ -1.51
VPS13C-207ENST00000558919 TRIM61Q5EBN2 209 aa5.59□□□□□ -1.51
VPS13C-207ENST00000558919 GSTCDQ8NEC7 633 aa5.59□□□□□ -1.51
VPS13C-207ENST00000558919 TTLL11Q8NHH1 800 aa5.59□□□□□ -1.51
VPS13C-207ENST00000558919 KCNJ15Q99712 375 aa5.59□□□□□ -1.51
VPS13C-207ENST00000558919 YIPF4Q9BSR8 244 aa5.59□□□□□ -1.51
VPS13C-207ENST00000558919 MRPL4Q9BYD3 311 aaKnown RBP5.59□□□□□ -1.51
VPS13C-207ENST00000558919 HSPBP1Q9NZL4 362 aa5.59□□□□□ -1.51
VPS13C-207ENST00000558919 PCDHA8Q9Y5H6 950 aa5.59□□□□□ -1.51
VPS13C-207ENST00000558919 FFAR3O14843 346 aa5.58□□□□□ -1.52
VPS13C-207ENST00000558919 SLC27A2O14975 620 aa5.58□□□□□ -1.52
VPS13C-207ENST00000558919 KCNQ2O43526 872 aa5.58□□□□□ -1.52
VPS13C-207ENST00000558919 COL6A2P12110 1019 aa5.58□□□□□ -1.52
VPS13C-207ENST00000558919 GUCY1A3Q02108 690 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms