RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 NT5DC4Q86YG4 428 aa4.6□□□□□ -1.67
VPS13C-205ENST00000558088 NPLOC4Q8TAT6 608 aa4.6□□□□□ -1.67
VPS13C-205ENST00000558088 CCDC140Q96MF4 163 aa4.6□□□□□ -1.67
VPS13C-205ENST00000558088 SORCS2Q96PQ0 1159 aa4.6□□□□□ -1.67
VPS13C-205ENST00000558088 TMEM209Q96SK2 561 aa4.6□□□□□ -1.67
VPS13C-205ENST00000558088 DTLQ9NZJ0 730 aa4.6□□□□□ -1.67
VPS13C-205ENST00000558088 CROTQ9UKG9 612 aa4.6□□□□□ -1.67
VPS13C-205ENST00000558088 PCDHB4Q9Y5E5 795 aa4.6□□□□□ -1.67
VPS13C-205ENST00000558088 ZBTB7CA1YPR0 619 aa4.59□□□□□ -1.67
VPS13C-205ENST00000558088 H7BY64 318 aa4.59□□□□□ -1.67
VPS13C-205ENST00000558088 B4GALT3O60512 393 aa4.59□□□□□ -1.67
VPS13C-205ENST00000558088 DGKIO75912 1065 aa4.59□□□□□ -1.67
VPS13C-205ENST00000558088 CPP00450 1065 aa4.59□□□□□ -1.67
VPS13C-205ENST00000558088 IL13P35225 146 aa4.59□□□□□ -1.67
VPS13C-205ENST00000558088 ECI1P42126 302 aa4.59□□□□□ -1.67
VPS13C-205ENST00000558088 KCNJ6P48051 423 aa4.59□□□□□ -1.67
VPS13C-205ENST00000558088 ADAM9Q13443 819 aa4.59□□□□□ -1.67
VPS13C-205ENST00000558088 CR1LQ2VPA4 569 aa4.59□□□□□ -1.67
VPS13C-205ENST00000558088 SV2CQ496J9 727 aa4.59□□□□□ -1.67
VPS13C-205ENST00000558088 STEAP3Q658P3 488 aa4.59□□□□□ -1.67
VPS13C-205ENST00000558088 Q8N1Y9 231 aa4.59□□□□□ -1.67
VPS13C-205ENST00000558088 BTN2A2Q8WVV5 523 aa4.59□□□□□ -1.67
VPS13C-205ENST00000558088 MRGPRX3Q96LB0 322 aa4.59□□□□□ -1.67
VPS13C-205ENST00000558088 ZSWIM3Q96MP5 696 aa4.59□□□□□ -1.67
VPS13C-205ENST00000558088 KLC2Q9H0B6 622 aa4.59□□□□□ -1.67
VPS13C-205ENST00000558088 BARX1Q9HBU1 254 aaPredicted RBP4.59□□□□□ -1.67
VPS13C-205ENST00000558088 PPP4R1LQ9P1A2 415 aa4.59□□□□□ -1.67
VPS13C-205ENST00000558088 TCAF1Q9Y4C2 921 aa4.59□□□□□ -1.67
VPS13C-205ENST00000558088 CYR61O00622 381 aa4.58□□□□□ -1.68
VPS13C-205ENST00000558088 FZD7O75084 574 aa4.58□□□□□ -1.68
VPS13C-205ENST00000558088 LTBRP36941 435 aa4.58□□□□□ -1.68
VPS13C-205ENST00000558088 PPP2CBP62714 309 aa4.58□□□□□ -1.68
VPS13C-205ENST00000558088 PPP2CAP67775 309 aa4.58□□□□□ -1.68
VPS13C-205ENST00000558088 LSAMPQ13449 338 aa4.58□□□□□ -1.68
VPS13C-205ENST00000558088 ACBD5Q5T8D3 534 aaPredicted RBP4.58□□□□□ -1.68
VPS13C-205ENST00000558088 SPRED1Q7Z699 444 aa4.58□□□□□ -1.68
VPS13C-205ENST00000558088 NLRP10Q86W26 655 aa4.58□□□□□ -1.68
VPS13C-205ENST00000558088 METTL16Q86W50 562 aaKnown RBP4.58□□□□□ -1.68
VPS13C-205ENST00000558088 PPIL6Q8IXY8 311 aa4.58□□□□□ -1.68
VPS13C-205ENST00000558088 KBTBD2Q8IY47 623 aa4.58□□□□□ -1.68
VPS13C-205ENST00000558088 FAM169BQ8N8A8 192 aa4.58□□□□□ -1.68
VPS13C-205ENST00000558088 YTHDC1Q96MU7 727 aaKnown RBP4.58□□□□□ -1.68
VPS13C-205ENST00000558088 SSBP3Q9BWW4 388 aaPredicted RBP4.58□□□□□ -1.68
VPS13C-205ENST00000558088 EPB41L1Q9H4G0 881 aa4.58□□□□□ -1.68
VPS13C-205ENST00000558088 CLDND1Q9NY35 253 aa4.58□□□□□ -1.68
VPS13C-205ENST00000558088 INPP5FQ9Y2H2 1132 aa4.58□□□□□ -1.68
VPS13C-205ENST00000558088 PCDHA2Q9Y5H9 948 aa4.58□□□□□ -1.68
VPS13C-205ENST00000558088 KRIT1O00522 736 aa4.57□□□□□ -1.68
VPS13C-205ENST00000558088 SELENOPP49908 381 aa4.57□□□□□ -1.68
VPS13C-205ENST00000558088 EPHB4P54760 987 aa4.57□□□□□ -1.68
VPS13C-205ENST00000558088 ICAM4Q14773 271 aa4.57□□□□□ -1.68
VPS13C-205ENST00000558088 HS1BP3Q53T59 392 aa4.57□□□□□ -1.68
VPS13C-205ENST00000558088 TNNI3KQ59H18 835 aa4.57□□□□□ -1.68
VPS13C-205ENST00000558088 SLFN13Q68D06 897 aa4.57□□□□□ -1.68
VPS13C-205ENST00000558088 TRMT10BQ6PF06 316 aaKnown RBP4.57□□□□□ -1.68
VPS13C-205ENST00000558088 TEPPQ6URK8 271 aa4.57□□□□□ -1.68
VPS13C-205ENST00000558088 TRIM48Q8IWZ4 208 aa4.57□□□□□ -1.68
VPS13C-205ENST00000558088 KLHL36Q8N4N3 616 aa4.57□□□□□ -1.68
VPS13C-205ENST00000558088 PHOSPHO1Q8TCT1 267 aa4.57□□□□□ -1.68
VPS13C-205ENST00000558088 VPS11Q9H270 941 aa4.57□□□□□ -1.68
VPS13C-205ENST00000558088 SEMA4AQ9H3S1 761 aa4.57□□□□□ -1.68
VPS13C-205ENST00000558088 CCSER2Q9H7U1 834 aa4.57□□□□□ -1.68
VPS13C-205ENST00000558088 MYOTQ9UBF9 498 aa4.57□□□□□ -1.68
VPS13C-205ENST00000558088 SCG5P05408 212 aa4.56□□□□□ -1.68
VPS13C-205ENST00000558088 ITGAVP06756 1048 aa4.56□□□□□ -1.68
VPS13C-205ENST00000558088 EMC4Q5J8M3 183 aa4.56□□□□□ -1.68
VPS13C-205ENST00000558088 LARP1BQ659C4 914 aaKnown RBP4.56□□□□□ -1.68
VPS13C-205ENST00000558088 ZNF585AQ6P3V2 769 aa4.56□□□□□ -1.68
VPS13C-205ENST00000558088 PKN3Q6P5Z2 889 aa4.56□□□□□ -1.68
VPS13C-205ENST00000558088 ZNF227Q86WZ6 799 aa4.56□□□□□ -1.68
VPS13C-205ENST00000558088 CCDC103Q8IW40 242 aa4.56□□□□□ -1.68
VPS13C-205ENST00000558088 ARRDC4Q8NCT1 418 aa4.56□□□□□ -1.68
VPS13C-205ENST00000558088 IGDCC4Q8TDY8 1250 aa4.56□□□□□ -1.68
VPS13C-205ENST00000558088 LGR4Q9BXB1 951 aa4.56□□□□□ -1.68
VPS13C-205ENST00000558088 ACTR10Q9NZ32 417 aa4.56□□□□□ -1.68
VPS13C-205ENST00000558088 ZDHHC9Q9Y397 364 aa4.56□□□□□ -1.68
VPS13C-205ENST00000558088 TCRBV5S2A0A599 114 aa4.55□□□□□ -1.68
VPS13C-205ENST00000558088 AGRPO00253 132 aa4.55□□□□□ -1.68
VPS13C-205ENST00000558088 MUSKO15146 869 aa4.55□□□□□ -1.68
VPS13C-205ENST00000558088 B4GALT4O60513 344 aa4.55□□□□□ -1.68
VPS13C-205ENST00000558088 MFAP1P55081 439 aaKnown RBP4.55□□□□□ -1.68
VPS13C-205ENST00000558088 MLLT6P55198 1093 aaPredicted RBP4.55□□□□□ -1.68
VPS13C-205ENST00000558088 HDLBPQ00341 1268 aaKnown RBP4.55□□□□□ -1.68
VPS13C-205ENST00000558088 NFATC3Q12968 1075 aa4.55□□□□□ -1.68
VPS13C-205ENST00000558088 VASNQ6EMK4 673 aa4.55□□□□□ -1.68
VPS13C-205ENST00000558088 CRIP3Q6Q6R5 217 aa4.55□□□□□ -1.68
VPS13C-205ENST00000558088 C6orf15Q6UXA7 325 aaPredicted RBP4.55□□□□□ -1.68
VPS13C-205ENST00000558088 TMC5Q6UXY8 1006 aa4.55□□□□□ -1.68
VPS13C-205ENST00000558088 FAM178BQ8IXR5 827 aa4.55□□□□□ -1.68
VPS13C-205ENST00000558088 PALM2Q8IXS6 379 aa4.55□□□□□ -1.68
VPS13C-205ENST00000558088 RCBTB1Q8NDN9 531 aa4.55□□□□□ -1.68
VPS13C-205ENST00000558088 PPIL4Q8WUA2 492 aaKnown RBP eCLIP4.55□□□□□ -1.68
VPS13C-205ENST00000558088 MBD6Q96DN6 1003 aa4.55□□□□□ -1.68
VPS13C-205ENST00000558088 MRIQ9BWK5 157 aa4.55□□□□□ -1.68
VPS13C-205ENST00000558088 SCAND2PQ9GZW5 306 aaPredicted RBP4.55□□□□□ -1.68
VPS13C-205ENST00000558088 SMOC1Q9H4F8 434 aa4.55□□□□□ -1.68
VPS13C-205ENST00000558088 TMEFF2Q9UIK5 374 aaPredicted RBP4.55□□□□□ -1.68
VPS13C-205ENST00000558088 NUB1Q9Y5A7 615 aa4.55□□□□□ -1.68
VPS13C-205ENST00000558088 GPR42O15529 346 aa4.54□□□□□ -1.68
VPS13C-205ENST00000558088 SUSD5O60279 629 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms