RNA–Protein interactions for RNA: ENST00000557782.1

TDP1-217, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 318 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-217ENST00000557782 FAM193AP78312 1265 aa4.66□□□□□ -1.66
TDP1-217ENST00000557782 PHC1P78364 1004 aa4.66□□□□□ -1.66
TDP1-217ENST00000557782 BTKQ06187 659 aa4.66□□□□□ -1.66
TDP1-217ENST00000557782 IFIT5Q13325 482 aaKnown RBP4.66□□□□□ -1.66
TDP1-217ENST00000557782 SNW1Q13573 536 aaKnown RBP4.66□□□□□ -1.66
TDP1-217ENST00000557782 TERF2Q15554 542 aa4.66□□□□□ -1.66
TDP1-217ENST00000557782 CRY1Q16526 586 aa4.66□□□□□ -1.66
TDP1-217ENST00000557782 SLCO4C1Q6ZQN7 724 aa4.66□□□□□ -1.66
TDP1-217ENST00000557782 MMS22LQ6ZRQ5 1243 aa4.66□□□□□ -1.66
TDP1-217ENST00000557782 CCDC149Q6ZUS6 474 aa4.66□□□□□ -1.66
TDP1-217ENST00000557782 C16orf59Q7L2K0 433 aa4.66□□□□□ -1.66
TDP1-217ENST00000557782 ABCF1Q8NE71 845 aaKnown RBP eCLIP4.66□□□□□ -1.66
TDP1-217ENST00000557782 LMBR1Q8WVP7 490 aa4.66□□□□□ -1.66
TDP1-217ENST00000557782 POF1BQ8WVV4 589 aa4.66□□□□□ -1.66
TDP1-217ENST00000557782 PGBD4Q96DM1 585 aa4.66□□□□□ -1.66
TDP1-217ENST00000557782 TRMT2BQ96GJ1 504 aaKnown RBP4.66□□□□□ -1.66
TDP1-217ENST00000557782 BOCQ9BWV1 1114 aa4.66□□□□□ -1.66
TDP1-217ENST00000557782 INO80BQ9C086 356 aaPredicted RBP4.66□□□□□ -1.66
TDP1-217ENST00000557782 RNF208Q9H0X6 261 aa4.66□□□□□ -1.66
TDP1-217ENST00000557782 SUGCTQ9HAC7 445 aa4.66□□□□□ -1.66
TDP1-217ENST00000557782 SENP2Q9HC62 589 aa4.66□□□□□ -1.66
TDP1-217ENST00000557782 CATSPERZQ9NTU4 200 aa4.66□□□□□ -1.66
TDP1-217ENST00000557782 CCM2LQ9NUG4 571 aaPredicted RBP4.66□□□□□ -1.66
TDP1-217ENST00000557782 PLA2G2EQ9NZK7 142 aa4.66□□□□□ -1.66
TDP1-217ENST00000557782 SPO11Q9Y5K1 396 aa4.66□□□□□ -1.66
TDP1-217ENST00000557782 KRBA1A5PL33 1030 aa4.65□□□□□ -1.67
TDP1-217ENST00000557782 FAM227AF5H4B4 570 aa4.65□□□□□ -1.67
TDP1-217ENST00000557782 M0R082 166 aa4.65□□□□□ -1.67
TDP1-217ENST00000557782 TGM5O43548 720 aa4.65□□□□□ -1.67
TDP1-217ENST00000557782 MSCO60682 206 aa4.65□□□□□ -1.67
TDP1-217ENST00000557782 PQBP1O60828 265 aaKnown RBP4.65□□□□□ -1.67
TDP1-217ENST00000557782 KRT37O76014 449 aa4.65□□□□□ -1.67
TDP1-217ENST00000557782 GPR3P46089 330 aa4.65□□□□□ -1.67
TDP1-217ENST00000557782 SEPHS1P49903 392 aa4.65□□□□□ -1.67
TDP1-217ENST00000557782 ADKP55263 362 aaKnown RBP4.65□□□□□ -1.67
TDP1-217ENST00000557782 SOX4Q06945 474 aaPredicted RBP4.65□□□□□ -1.67
TDP1-217ENST00000557782 ZNF267Q14586 743 aaPredicted RBP4.65□□□□□ -1.67
TDP1-217ENST00000557782 SLC4A8Q2Y0W8 1093 aa4.65□□□□□ -1.67
TDP1-217ENST00000557782 PLA2G4EQ3MJ16 856 aa4.65□□□□□ -1.67
TDP1-217ENST00000557782 CREB3L3Q68CJ9 461 aa4.65□□□□□ -1.67
TDP1-217ENST00000557782 OTOP1Q7RTM1 612 aa4.65□□□□□ -1.67
TDP1-217ENST00000557782 ZNF610Q8N9Z0 462 aa4.65□□□□□ -1.67
TDP1-217ENST00000557782 SPATA5Q8NB90 893 aa4.65□□□□□ -1.67
TDP1-217ENST00000557782 ZBTB34Q8NCN2 500 aa4.65□□□□□ -1.67
TDP1-217ENST00000557782 SMG8Q8ND04 991 aaKnown RBP4.65□□□□□ -1.67
TDP1-217ENST00000557782 ZNF417Q8TAU3 575 aa4.65□□□□□ -1.67
TDP1-217ENST00000557782 DIS3LQ8TF46 1054 aaKnown RBP4.65□□□□□ -1.67
TDP1-217ENST00000557782 NANOS1Q8WY41 292 aaKnown RBP4.65□□□□□ -1.67
TDP1-217ENST00000557782 CCT6BQ92526 530 aa4.65□□□□□ -1.67
TDP1-217ENST00000557782 HPS3Q969F9 1004 aa4.65□□□□□ -1.67
TDP1-217ENST00000557782 COX4I2Q96KJ9 171 aa4.65□□□□□ -1.67
TDP1-217ENST00000557782 CCDC138Q96M89 665 aa4.65□□□□□ -1.67
TDP1-217ENST00000557782 ACAP3Q96P50 834 aa4.65□□□□□ -1.67
TDP1-217ENST00000557782 ZNF587Q96SQ5 575 aaPredicted RBP4.65□□□□□ -1.67
TDP1-217ENST00000557782 MAP3K14Q99558 947 aa4.65□□□□□ -1.67
TDP1-217ENST00000557782 ACO2Q99798 780 aaKnown RBP4.65□□□□□ -1.67
TDP1-217ENST00000557782 MTA3Q9BTC8 594 aa4.65□□□□□ -1.67
TDP1-217ENST00000557782 ZDHHC5Q9C0B5 715 aa4.65□□□□□ -1.67
TDP1-217ENST00000557782 GSX1Q9H4S2 264 aaPredicted RBP4.65□□□□□ -1.67
TDP1-217ENST00000557782 PCIF1Q9H4Z3 704 aa4.65□□□□□ -1.67
TDP1-217ENST00000557782 IPPKQ9H8X2 491 aa4.65□□□□□ -1.67
TDP1-217ENST00000557782 GPRC5CQ9NQ84 441 aa4.65□□□□□ -1.67
TDP1-217ENST00000557782 TOPORSQ9NS56 1045 aaPredicted RBP4.65□□□□□ -1.67
TDP1-217ENST00000557782 MBIPQ9NS73 344 aa4.65□□□□□ -1.67
TDP1-217ENST00000557782 TRMT13Q9NUP7 481 aaKnown RBP4.65□□□□□ -1.67
TDP1-217ENST00000557782 KCNK4Q9NYG8 393 aa4.65□□□□□ -1.67
TDP1-217ENST00000557782 C9orf78Q9NZ63 289 aaPredicted RBP4.65□□□□□ -1.67
TDP1-217ENST00000557782 KCNH3Q9ULD8 1083 aa4.65□□□□□ -1.67
TDP1-217ENST00000557782 DGKBQ9Y6T7 804 aa4.65□□□□□ -1.67
TDP1-217ENST00000557782 TRBV23OR9-2A0A075B6M9 112 aa4.64□□□□□ -1.67
TDP1-217ENST00000557782 SLC12A8A0AV02 714 aa4.64□□□□□ -1.67
TDP1-217ENST00000557782 PRRT4C9JH25 899 aa4.64□□□□□ -1.67
TDP1-217ENST00000557782 MEIS1O00470 390 aa4.64□□□□□ -1.67
TDP1-217ENST00000557782 EXOC5O00471 708 aa4.64□□□□□ -1.67
TDP1-217ENST00000557782 MYO1BO43795 1136 aa4.64□□□□□ -1.67
TDP1-217ENST00000557782 DTNBO60941 627 aa4.64□□□□□ -1.67
TDP1-217ENST00000557782 PRAMEF1O95521 474 aa4.64□□□□□ -1.67
TDP1-217ENST00000557782 SLC5A1P13866 664 aa4.64□□□□□ -1.67
TDP1-217ENST00000557782 GRK3P35626 688 aa4.64□□□□□ -1.67
TDP1-217ENST00000557782 DDIT3P35638 169 aa4.64□□□□□ -1.67
TDP1-217ENST00000557782 ECE1P42892 770 aa4.64□□□□□ -1.67
TDP1-217ENST00000557782 TM4SF4P48230 202 aa4.64□□□□□ -1.67
TDP1-217ENST00000557782 RENBPP51606 427 aa4.64□□□□□ -1.67
TDP1-217ENST00000557782 PUM3Q15397 648 aaKnown RBP4.64□□□□□ -1.67
TDP1-217ENST00000557782 ELF2Q15723 593 aa4.64□□□□□ -1.67
TDP1-217ENST00000557782 CLEC16AQ2KHT3 1053 aa4.64□□□□□ -1.67
TDP1-217ENST00000557782 ATAT1Q5SQI0 421 aa4.64□□□□□ -1.67
TDP1-217ENST00000557782 GPAT2Q6NUI2 795 aa4.64□□□□□ -1.67
TDP1-217ENST00000557782 LILRA6Q6PI73 481 aa4.64□□□□□ -1.67
TDP1-217ENST00000557782 CCDC174Q6PII3 467 aa4.64□□□□□ -1.67
TDP1-217ENST00000557782 TMC3Q7Z5M5 1100 aa4.64□□□□□ -1.67
TDP1-217ENST00000557782 DMRTC2Q8IXT2 367 aaPredicted RBP4.64□□□□□ -1.67
TDP1-217ENST00000557782 CMIPQ8IY22 773 aa4.64□□□□□ -1.67
TDP1-217ENST00000557782 GRAMD1CQ8IYS0 662 aa4.64□□□□□ -1.67
TDP1-217ENST00000557782 DTWD1Q8N5C7 304 aa4.64□□□□□ -1.67
TDP1-217ENST00000557782 NKAPQ8N5F7 415 aaKnown RBP4.64□□□□□ -1.67
TDP1-217ENST00000557782 CAMKK1Q8N5S9 505 aa4.64□□□□□ -1.67
TDP1-217ENST00000557782 PDILTQ8N807 584 aa4.64□□□□□ -1.67
TDP1-217ENST00000557782 FAM156AQ8NDB6 213 aa4.64□□□□□ -1.67
TDP1-217ENST00000557782 PPHLN1Q8NEY8 458 aaKnown RBP4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms