RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 GTF2A1P52655 376 aaPredicted RBP18■□□□□ 0.47
SHMT2-232ENST00000557487 PPP4CP60510 307 aa18■□□□□ 0.47
SHMT2-232ENST00000557487 RPS8P62241 208 aaKnown RBP18■□□□□ 0.47
SHMT2-232ENST00000557487 KLHDC7AQ5VTJ3 777 aa18■□□□□ 0.47
SHMT2-232ENST00000557487 WHAMMQ8TF30 809 aa18■□□□□ 0.47
SHMT2-232ENST00000557487 LARP4BQ92615 738 aaKnown RBP18■□□□□ 0.47
SHMT2-232ENST00000557487 TMEM47Q9BQJ4 181 aa18■□□□□ 0.47
SHMT2-232ENST00000557487 PAGR1Q9BTK6 254 aa18■□□□□ 0.47
SHMT2-232ENST00000557487 PDGFDQ9GZP0 370 aaPredicted RBP18■□□□□ 0.47
SHMT2-232ENST00000557487 SLC39A2Q9NP94 309 aa18■□□□□ 0.47
SHMT2-232ENST00000557487 SEC63Q9UGP8 760 aaKnown RBP18■□□□□ 0.47
SHMT2-232ENST00000557487 TECP42680 631 aa17.99■□□□□ 0.47
SHMT2-232ENST00000557487 KDM7AQ6ZMT4 941 aa17.99■□□□□ 0.47
SHMT2-232ENST00000557487 LRRC55Q6ZSA7 311 aa17.99■□□□□ 0.47
SHMT2-232ENST00000557487 MICALCLQ6ZW33 695 aa17.99■□□□□ 0.47
SHMT2-232ENST00000557487 WDR66Q8TBY9 1149 aa17.99■□□□□ 0.47
SHMT2-232ENST00000557487 SLC16A10Q8TF71 515 aa17.99■□□□□ 0.47
SHMT2-232ENST00000557487 ZBTB9Q96C00 473 aa17.99■□□□□ 0.47
SHMT2-232ENST00000557487 CDK5RAP3Q96JB5 506 aa17.99■□□□□ 0.47
SHMT2-232ENST00000557487 NYXQ9GZU5 481 aa17.99■□□□□ 0.47
SHMT2-232ENST00000557487 GRB10Q13322 594 aa17.98■□□□□ 0.47
SHMT2-232ENST00000557487 CFAP58Q5T655 872 aa17.98■□□□□ 0.47
SHMT2-232ENST00000557487 IQCKQ8N0W5 287 aa17.98■□□□□ 0.47
SHMT2-232ENST00000557487 CELF1Q92879 486 aaKnown RBP17.98■□□□□ 0.47
SHMT2-232ENST00000557487 CEP63Q96MT8 703 aa17.98■□□□□ 0.47
SHMT2-232ENST00000557487 MTMR9Q96QG7 549 aa17.98■□□□□ 0.47
SHMT2-232ENST00000557487 BLOC1S4Q9NUP1 217 aa17.98■□□□□ 0.47
SHMT2-232ENST00000557487 COL5A3P25940 1745 aaPredicted RBP17.98■□□□□ 0.47
SHMT2-232ENST00000557487 MYMKA6NI61 221 aa17.98■□□□□ 0.47
SHMT2-232ENST00000557487 EPHB6O15197 1021 aa17.98■□□□□ 0.47
SHMT2-232ENST00000557487 LDHCP07864 332 aa17.98■□□□□ 0.47
SHMT2-232ENST00000557487 GUCY2CP25092 1073 aa17.98■□□□□ 0.47
SHMT2-232ENST00000557487 EHHADHQ08426 723 aa17.98■□□□□ 0.47
SHMT2-232ENST00000557487 REXO1Q8N1G1 1221 aaKnown RBP17.98■□□□□ 0.47
SHMT2-232ENST00000557487 MICALL1Q8N3F8 863 aa17.98■□□□□ 0.47
SHMT2-232ENST00000557487 DRC1Q96MC2 740 aa17.98■□□□□ 0.47
SHMT2-232ENST00000557487 PLEKHA4Q9H4M7 779 aa17.98■□□□□ 0.47
SHMT2-232ENST00000557487 RBM12Q9NTZ6 932 aaKnown RBP17.98■□□□□ 0.47
SHMT2-232ENST00000557487 GGA2Q9UJY4 613 aa17.98■□□□□ 0.47
SHMT2-232ENST00000557487 BTNL10A8MVZ5 291 aa17.97■□□□□ 0.47
SHMT2-232ENST00000557487 SLC26A4O43511 780 aa17.97■□□□□ 0.47
SHMT2-232ENST00000557487 FKBP3Q00688 224 aaKnown RBP17.97■□□□□ 0.47
SHMT2-232ENST00000557487 NAB2Q15742 525 aa17.97■□□□□ 0.47
SHMT2-232ENST00000557487 CALCRLQ16602 461 aa17.97■□□□□ 0.47
SHMT2-232ENST00000557487 TTMPQ5BVD1 217 aa17.97■□□□□ 0.47
SHMT2-232ENST00000557487 C10orf76Q5T2E6 689 aa17.97■□□□□ 0.47
SHMT2-232ENST00000557487 SWT1Q5T5J6 900 aaKnown RBP17.97■□□□□ 0.47
SHMT2-232ENST00000557487 SFMBT2Q5VUG0 894 aa17.97■□□□□ 0.47
SHMT2-232ENST00000557487 HGSNATQ68CP4 663 aa17.97■□□□□ 0.47
SHMT2-232ENST00000557487 C3orf67Q6ZVT6 689 aa17.97■□□□□ 0.47
SHMT2-232ENST00000557487 YTHDF3Q7Z739 585 aaKnown RBP17.97■□□□□ 0.47
SHMT2-232ENST00000557487 TSEN2Q8NCE0 465 aaKnown RBP17.97■□□□□ 0.47
SHMT2-232ENST00000557487 TBCKQ8TEA7 893 aa17.97■□□□□ 0.47
SHMT2-232ENST00000557487 RAD54LQ92698 747 aa17.97■□□□□ 0.47
SHMT2-232ENST00000557487 USP17L3A6NCW0 530 aa17.96■□□□□ 0.47
SHMT2-232ENST00000557487 USP17L4A6NCW7 530 aa17.96■□□□□ 0.47
SHMT2-232ENST00000557487 MATR3P43243 847 aaKnown RBP eCLIP17.96■□□□□ 0.47
SHMT2-232ENST00000557487 SLC7A5Q01650 507 aa17.96■□□□□ 0.47
SHMT2-232ENST00000557487 USP17L1Q7RTZ2 530 aa17.96■□□□□ 0.47
SHMT2-232ENST00000557487 COL23A1Q86Y22 540 aaPredicted RBP17.96■□□□□ 0.47
SHMT2-232ENST00000557487 ZIM3Q96PE6 472 aa17.96■□□□□ 0.47
SHMT2-232ENST00000557487 CEP89Q96ST8 783 aa17.96■□□□□ 0.47
SHMT2-232ENST00000557487 PCDHGC5Q9Y5F6 944 aa17.96■□□□□ 0.47
SHMT2-232ENST00000557487 COL4A3BPQ9Y5P4 624 aa17.96■□□□□ 0.47
SHMT2-232ENST00000557487 MYH14Q7Z406 1995 aaKnown RBP17.96■□□□□ 0.47
SHMT2-232ENST00000557487 WTIPA6NIX2 430 aaPredicted RBP17.96■□□□□ 0.47
SHMT2-232ENST00000557487 HMGB1P1B2RPK0 211 aaPredicted RBP17.96■□□□□ 0.47
SHMT2-232ENST00000557487 RPS6KA4O75676 772 aa17.96■□□□□ 0.47
SHMT2-232ENST00000557487 LDHBP07195 334 aaKnown RBP17.96■□□□□ 0.47
SHMT2-232ENST00000557487 INPP5BP32019 993 aa17.96■□□□□ 0.47
SHMT2-232ENST00000557487 MARSP56192 900 aaKnown RBP17.96■□□□□ 0.47
SHMT2-232ENST00000557487 TNNC1P63316 161 aa17.96■□□□□ 0.47
SHMT2-232ENST00000557487 RASSF7Q02833 373 aa17.96■□□□□ 0.47
SHMT2-232ENST00000557487 KRT79Q5XKE5 535 aa17.96■□□□□ 0.47
SHMT2-232ENST00000557487 MYOCDQ8IZQ8 938 aa17.96■□□□□ 0.47
SHMT2-232ENST00000557487 MTMR8Q96EF0 704 aa17.96■□□□□ 0.47
SHMT2-232ENST00000557487 EEF2KMTQ96G04 330 aa17.96■□□□□ 0.47
SHMT2-232ENST00000557487 PNMA5Q96PV4 448 aa17.96■□□□□ 0.47
SHMT2-232ENST00000557487 MTFR1LQ9H019 292 aa17.96■□□□□ 0.47
SHMT2-232ENST00000557487 STX8Q9UNK0 236 aa17.96■□□□□ 0.47
SHMT2-232ENST00000557487 NDUFAB1O14561 156 aa17.95■□□□□ 0.46
SHMT2-232ENST00000557487 GNPATO15228 680 aa17.95■□□□□ 0.46
SHMT2-232ENST00000557487 KIAA0754O94854 1291 aa17.95■□□□□ 0.46
SHMT2-232ENST00000557487 RASA1P20936 1047 aa17.95■□□□□ 0.46
SHMT2-232ENST00000557487 TMEM119Q4V9L6 283 aa17.95■□□□□ 0.46
SHMT2-232ENST00000557487 TDRD12Q587J7 1177 aaKnown RBP17.95■□□□□ 0.46
SHMT2-232ENST00000557487 LRIG3Q6UXM1 1119 aa17.95■□□□□ 0.46
SHMT2-232ENST00000557487 AMIGO3Q86WK7 504 aa17.95■□□□□ 0.46
SHMT2-232ENST00000557487 NEDD1Q8NHV4 660 aa17.95■□□□□ 0.46
SHMT2-232ENST00000557487 ARL8AQ96BM9 186 aa17.95■□□□□ 0.46
SHMT2-232ENST00000557487 NLRP3Q96P20 1036 aa17.95■□□□□ 0.46
SHMT2-232ENST00000557487 SPON1Q9HCB6 807 aa17.95■□□□□ 0.46
SHMT2-232ENST00000557487 ATP6V0A2Q9Y487 856 aa17.95■□□□□ 0.46
SHMT2-232ENST00000557487 ATP8B3O60423 1300 aa17.95■□□□□ 0.46
SHMT2-232ENST00000557487 HEXIM1O94992 359 aaKnown RBP17.94■□□□□ 0.46
SHMT2-232ENST00000557487 KLRK1P26718 216 aa17.94■□□□□ 0.46
SHMT2-232ENST00000557487 SLC1A4P43007 532 aa17.94■□□□□ 0.46
SHMT2-232ENST00000557487 NAP1L1P55209 391 aaKnown RBP17.94■□□□□ 0.46
SHMT2-232ENST00000557487 GFPT1Q06210 699 aaPredicted RBP17.94■□□□□ 0.46
SHMT2-232ENST00000557487 CDC37Q16543 378 aaPredicted RBP17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms