RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 LRIG3Q6UXM1 1119 aa17.95■□□□□ 0.46
SHMT2-231ENST00000557433 NEDD1Q8NHV4 660 aa17.95■□□□□ 0.46
SHMT2-231ENST00000557433 ARL8AQ96BM9 186 aa17.95■□□□□ 0.46
SHMT2-231ENST00000557433 NLRP3Q96P20 1036 aa17.95■□□□□ 0.46
SHMT2-231ENST00000557433 ATP6V0A2Q9Y487 856 aa17.95■□□□□ 0.46
SHMT2-231ENST00000557433 ATP8B3O60423 1300 aa17.95■□□□□ 0.46
SHMT2-231ENST00000557433 HEXIM1O94992 359 aaKnown RBP17.94■□□□□ 0.46
SHMT2-231ENST00000557433 KLRK1P26718 216 aa17.94■□□□□ 0.46
SHMT2-231ENST00000557433 SLC1A4P43007 532 aa17.94■□□□□ 0.46
SHMT2-231ENST00000557433 NAP1L1P55209 391 aaKnown RBP17.94■□□□□ 0.46
SHMT2-231ENST00000557433 GFPT1Q06210 699 aaPredicted RBP17.94■□□□□ 0.46
SHMT2-231ENST00000557433 CDC37Q16543 378 aaPredicted RBP17.94■□□□□ 0.46
SHMT2-231ENST00000557433 SLC18A3Q16572 532 aa17.94■□□□□ 0.46
SHMT2-231ENST00000557433 ZCWPW2Q504Y3 356 aa17.94■□□□□ 0.46
SHMT2-231ENST00000557433 ARFGAP2Q8N6H7 521 aa17.94■□□□□ 0.46
SHMT2-231ENST00000557433 DYNLL2Q96FJ2 89 aa17.94■□□□□ 0.46
SHMT2-231ENST00000557433 CXCR5P32302 372 aa17.94■□□□□ 0.46
SHMT2-231ENST00000557433 TXKP42681 527 aa17.94■□□□□ 0.46
SHMT2-231ENST00000557433 IFI16Q16666 785 aaKnown RBP17.94■□□□□ 0.46
SHMT2-231ENST00000557433 MEI1Q5TIA1 1274 aa17.94■□□□□ 0.46
SHMT2-231ENST00000557433 MCTP2Q6DN12 878 aa17.94■□□□□ 0.46
SHMT2-231ENST00000557433 C3orf20Q8ND61 904 aa17.94■□□□□ 0.46
SHMT2-231ENST00000557433 CCDC43Q96MW1 224 aaKnown RBP17.94■□□□□ 0.46
SHMT2-231ENST00000557433 EPN3Q9H201 632 aa17.94■□□□□ 0.46
SHMT2-231ENST00000557433 BMP2KQ9NSY1 1161 aaPredicted RBP17.94■□□□□ 0.46
SHMT2-231ENST00000557433 TFCP2L1Q9NZI6 479 aa17.94■□□□□ 0.46
SHMT2-231ENST00000557433 SALL4Q9UJQ4 1053 aa17.94■□□□□ 0.46
SHMT2-231ENST00000557433 IRS2Q9Y4H2 1338 aa17.93■□□□□ 0.46
SHMT2-231ENST00000557433 NAV1Q8NEY1 1877 aa17.93■□□□□ 0.46
SHMT2-231ENST00000557433 COL5A3P25940 1745 aaPredicted RBP17.93■□□□□ 0.46
SHMT2-231ENST00000557433 NCK2O43639 380 aa17.93■□□□□ 0.46
SHMT2-231ENST00000557433 ANXA13P27216 316 aa17.93■□□□□ 0.46
SHMT2-231ENST00000557433 NOVP48745 357 aa17.93■□□□□ 0.46
SHMT2-231ENST00000557433 HSPA2P54652 639 aa17.93■□□□□ 0.46
SHMT2-231ENST00000557433 KCNMA1Q12791 1236 aa17.93■□□□□ 0.46
SHMT2-231ENST00000557433 DDB1Q16531 1140 aa17.93■□□□□ 0.46
SHMT2-231ENST00000557433 FAM83BQ5T0W9 1011 aa17.93■□□□□ 0.46
SHMT2-231ENST00000557433 PPP1R18Q6NYC8 613 aa17.93■□□□□ 0.46
SHMT2-231ENST00000557433 C16orf86Q6ZW13 317 aa17.93■□□□□ 0.46
SHMT2-231ENST00000557433 SH3RF3Q8TEJ3 882 aaPredicted RBP17.93■□□□□ 0.46
SHMT2-231ENST00000557433 INPP4AQ96PE3 977 aaPredicted RBP17.93■□□□□ 0.46
SHMT2-231ENST00000557433 TANGO6Q9C0B7 1094 aa17.93■□□□□ 0.46
SHMT2-231ENST00000557433 RIOX1Q9H6W3 641 aa17.93■□□□□ 0.46
SHMT2-231ENST00000557433 EPB41L5Q9HCM4 733 aa17.93■□□□□ 0.46
SHMT2-231ENST00000557433 AIPL1Q9NZN9 384 aa17.93■□□□□ 0.46
SHMT2-231ENST00000557433 GLI1P08151 1106 aa17.92■□□□□ 0.46
SHMT2-231ENST00000557433 HSPA9P38646 679 aaKnown RBP17.92■□□□□ 0.46
SHMT2-231ENST00000557433 CUL1Q13616 776 aa17.92■□□□□ 0.46
SHMT2-231ENST00000557433 CCDC40Q4G0X9 1142 aa17.92■□□□□ 0.46
SHMT2-231ENST00000557433 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.92■□□□□ 0.46
SHMT2-231ENST00000557433 DDX12PQ92771 950 aa17.92■□□□□ 0.46
SHMT2-231ENST00000557433 HPS3Q969F9 1004 aa17.92■□□□□ 0.46
SHMT2-231ENST00000557433 ATP6V1G3Q96LB4 118 aa17.92■□□□□ 0.46
SHMT2-231ENST00000557433 NAP1L4Q99733 375 aaKnown RBP17.92■□□□□ 0.46
SHMT2-231ENST00000557433 ANKRD65E5RJM6 399 aa17.92■□□□□ 0.46
SHMT2-231ENST00000557433 NKRFO15226 690 aaKnown RBP eCLIP17.92■□□□□ 0.46
SHMT2-231ENST00000557433 MEFVO15553 781 aaPredicted RBP17.92■□□□□ 0.46
SHMT2-231ENST00000557433 PALMO75781 387 aa17.92■□□□□ 0.46
SHMT2-231ENST00000557433 FSBPO95073 299 aa17.92■□□□□ 0.46
SHMT2-231ENST00000557433 MYBP10242 640 aa17.92■□□□□ 0.46
SHMT2-231ENST00000557433 CARSP49589 748 aaKnown RBP17.92■□□□□ 0.46
SHMT2-231ENST00000557433 GUCY2DQ02846 1103 aa17.92■□□□□ 0.46
SHMT2-231ENST00000557433 PPP4R3AQ6IN85 833 aa17.92■□□□□ 0.46
SHMT2-231ENST00000557433 PPP4R3CPQ6ZMV5 832 aa17.92■□□□□ 0.46
SHMT2-231ENST00000557433 CNPY4Q8N129 248 aa17.92■□□□□ 0.46
SHMT2-231ENST00000557433 SNX29Q8TEQ0 813 aa17.92■□□□□ 0.46
SHMT2-231ENST00000557433 TAF4BQ92750 862 aa17.92■□□□□ 0.46
SHMT2-231ENST00000557433 PBKQ96KB5 322 aa17.92■□□□□ 0.46
SHMT2-231ENST00000557433 EYA3Q99504 573 aa17.92■□□□□ 0.46
SHMT2-231ENST00000557433 NFU1Q9UMS0 254 aa17.92■□□□□ 0.46
SHMT2-231ENST00000557433 BZW2Q9Y6E2 419 aaKnown RBP17.92■□□□□ 0.46
SHMT2-231ENST00000557433 KDM3AQ9Y4C1 1321 aa17.92■□□□□ 0.46
SHMT2-231ENST00000557433 GOLGA6L10A6NI86 522 aa17.91■□□□□ 0.46
SHMT2-231ENST00000557433 ZNF233A6NK53 670 aa17.91■□□□□ 0.46
SHMT2-231ENST00000557433 BUB1O43683 1085 aa17.91■□□□□ 0.46
SHMT2-231ENST00000557433 PLCG2P16885 1265 aa17.91■□□□□ 0.46
SHMT2-231ENST00000557433 NR1D1P20393 614 aa17.91■□□□□ 0.46
SHMT2-231ENST00000557433 LSP1P33241 339 aa17.91■□□□□ 0.46
SHMT2-231ENST00000557433 LIG3P49916 1009 aa17.91■□□□□ 0.46
SHMT2-231ENST00000557433 ADCY7P51828 1080 aa17.91■□□□□ 0.46
SHMT2-231ENST00000557433 HYIQ5T013 277 aa17.91■□□□□ 0.46
SHMT2-231ENST00000557433 OTUD6BQ8N6M0 293 aa17.91■□□□□ 0.46
SHMT2-231ENST00000557433 CALR3Q96L12 384 aaKnown RBP17.91■□□□□ 0.46
SHMT2-231ENST00000557433 PSMB7Q99436 277 aa17.91■□□□□ 0.46
SHMT2-231ENST00000557433 NT5C3AQ9H0P0 336 aa17.91■□□□□ 0.46
SHMT2-231ENST00000557433 TMEM59LQ9UK28 342 aa17.91■□□□□ 0.46
SHMT2-231ENST00000557433 LEMD3Q9Y2U8 911 aa17.91■□□□□ 0.46
SHMT2-231ENST00000557433 MYH10P35580 1976 aa17.91■□□□□ 0.46
SHMT2-231ENST00000557433 PPP1R37O75864 691 aa17.9■□□□□ 0.46
SHMT2-231ENST00000557433 NOL4O94818 638 aa17.9■□□□□ 0.46
SHMT2-231ENST00000557433 GOLGA8HP0CJ92 632 aa17.9■□□□□ 0.46
SHMT2-231ENST00000557433 PDCLQ13371 301 aa17.9■□□□□ 0.46
SHMT2-231ENST00000557433 DRP2Q13474 957 aa17.9■□□□□ 0.46
SHMT2-231ENST00000557433 DYMQ7RTS9 669 aa17.9■□□□□ 0.46
SHMT2-231ENST00000557433 ZC3H3Q8IXZ2 948 aaKnown RBP17.9■□□□□ 0.46
SHMT2-231ENST00000557433 ANKRD13CQ8N6S4 541 aa17.9■□□□□ 0.46
SHMT2-231ENST00000557433 PRPF38AQ8NAV1 312 aaKnown RBP17.9■□□□□ 0.46
SHMT2-231ENST00000557433 USP38Q8NB14 1042 aa17.9■□□□□ 0.46
SHMT2-231ENST00000557433 SNED1Q8TER0 1413 aa17.9■□□□□ 0.46
SHMT2-231ENST00000557433 LRRC45Q96CN5 670 aa17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms