RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 XBP1P17861 261 aa12.22□□□□□ -0.45
LINC00239-201ENST00000556973 PURAQ00577 322 aaKnown RBP12.22□□□□□ -0.45
LINC00239-201ENST00000556973 SP2Q02086 613 aa12.22□□□□□ -0.45
LINC00239-201ENST00000556973 NEDD9Q14511 834 aa12.22□□□□□ -0.45
LINC00239-201ENST00000556973 RABEP1Q15276 862 aa12.22□□□□□ -0.45
LINC00239-201ENST00000556973 TRIM60Q495X7 471 aa12.22□□□□□ -0.45
LINC00239-201ENST00000556973 MYSM1Q5VVJ2 828 aa12.22□□□□□ -0.45
LINC00239-201ENST00000556973 ANKRD33Q7Z3H0 272 aa12.22□□□□□ -0.45
LINC00239-201ENST00000556973 GIMAP8Q8ND71 665 aaPredicted RBP12.22□□□□□ -0.45
LINC00239-201ENST00000556973 PPTC7Q8NI37 304 aa12.22□□□□□ -0.45
LINC00239-201ENST00000556973 WASF1Q92558 559 aa12.22□□□□□ -0.45
LINC00239-201ENST00000556973 GTF3C6Q969F1 213 aa12.22□□□□□ -0.45
LINC00239-201ENST00000556973 GPRASP2Q96D09 838 aa12.22□□□□□ -0.45
LINC00239-201ENST00000556973 ZSCAN31Q96LW9 406 aaPredicted RBP12.22□□□□□ -0.45
LINC00239-201ENST00000556973 TOX2Q96NM4 488 aa12.22□□□□□ -0.45
LINC00239-201ENST00000556973 SENP7Q9BQF6 1050 aa12.22□□□□□ -0.45
LINC00239-201ENST00000556973 MLXIPQ9HAP2 919 aa12.22□□□□□ -0.45
LINC00239-201ENST00000556973 JADE2Q9NQC1 790 aa12.22□□□□□ -0.45
LINC00239-201ENST00000556973 TMEM260Q9NX78 707 aa12.22□□□□□ -0.45
LINC00239-201ENST00000556973 UBIAD1Q9Y5Z9 338 aa12.22□□□□□ -0.45
LINC00239-201ENST00000556973 A0A0U1RQG5 324 aaPredicted RBP12.21□□□□□ -0.45
LINC00239-201ENST00000556973 DCDC2CA8MYV0 355 aa12.21□□□□□ -0.45
LINC00239-201ENST00000556973 PPFIA4O75335 1185 aa12.21□□□□□ -0.45
LINC00239-201ENST00000556973 LARGE1O95461 756 aa12.21□□□□□ -0.45
LINC00239-201ENST00000556973 CTDNEP1O95476 244 aa12.21□□□□□ -0.45
LINC00239-201ENST00000556973 MYL3P08590 195 aa12.21□□□□□ -0.45
LINC00239-201ENST00000556973 ITGB5P18084 799 aa12.21□□□□□ -0.45
LINC00239-201ENST00000556973 SREBF1P36956 1147 aa12.21□□□□□ -0.45
LINC00239-201ENST00000556973 TLE2Q04725 743 aa12.21□□□□□ -0.45
LINC00239-201ENST00000556973 ITGA7Q13683 1181 aa12.21□□□□□ -0.45
LINC00239-201ENST00000556973 DGKDQ16760 1214 aa12.21□□□□□ -0.45
LINC00239-201ENST00000556973 JAKMIP3Q5VZ66 844 aa12.21□□□□□ -0.45
LINC00239-201ENST00000556973 GALNT17Q6IS24 598 aa12.21□□□□□ -0.45
LINC00239-201ENST00000556973 REXO1Q8N1G1 1221 aaKnown RBP12.21□□□□□ -0.45
LINC00239-201ENST00000556973 SLC43A3Q8NBI5 491 aa12.21□□□□□ -0.45
LINC00239-201ENST00000556973 AFG1LQ8WV93 481 aa12.21□□□□□ -0.45
LINC00239-201ENST00000556973 PGBD1Q96JS3 809 aa12.21□□□□□ -0.45
LINC00239-201ENST00000556973 MXRA8Q9BRK3 442 aa12.21□□□□□ -0.45
LINC00239-201ENST00000556973 MTG1Q9BT17 334 aaPredicted RBP12.21□□□□□ -0.45
LINC00239-201ENST00000556973 ANO3Q9BYT9 981 aa12.21□□□□□ -0.45
LINC00239-201ENST00000556973 BACH2Q9BYV9 841 aa12.21□□□□□ -0.45
LINC00239-201ENST00000556973 ORC3Q9UBD5 711 aaPredicted RBP12.21□□□□□ -0.45
LINC00239-201ENST00000556973 PRKAG2Q9UGJ0 569 aa12.21□□□□□ -0.45
LINC00239-201ENST00000556973 PCDHA4Q9UN74 947 aa12.21□□□□□ -0.45
LINC00239-201ENST00000556973 ST18O60284 1047 aa12.2□□□□□ -0.46
LINC00239-201ENST00000556973 GGPS1O95749 300 aa12.2□□□□□ -0.46
LINC00239-201ENST00000556973 MMP3P08254 477 aa12.2□□□□□ -0.46
LINC00239-201ENST00000556973 CYP3A4P08684 503 aa12.2□□□□□ -0.46
LINC00239-201ENST00000556973 UBA1P22314 1058 aaKnown RBP12.2□□□□□ -0.46
LINC00239-201ENST00000556973 ZNF76P36508 570 aa12.2□□□□□ -0.46
LINC00239-201ENST00000556973 SEMA3FQ13275 785 aa12.2□□□□□ -0.46
LINC00239-201ENST00000556973 MTMR1Q13613 665 aa12.2□□□□□ -0.46
LINC00239-201ENST00000556973 HSDL1Q3SXM5 330 aa12.2□□□□□ -0.46
LINC00239-201ENST00000556973 SPATA33Q96N06 139 aa12.2□□□□□ -0.46
LINC00239-201ENST00000556973 TBC1D32Q96NH3 1257 aa12.2□□□□□ -0.46
LINC00239-201ENST00000556973 SH2B1Q9NRF2 756 aaPredicted RBP12.2□□□□□ -0.46
LINC00239-201ENST00000556973 DOCK5Q9H7D0 1870 aa12.2□□□□□ -0.46
LINC00239-201ENST00000556973 GRIN2DO15399 1336 aa12.19□□□□□ -0.46
LINC00239-201ENST00000556973 MEIS1O00470 390 aa12.19□□□□□ -0.46
LINC00239-201ENST00000556973 ADAMTS3O15072 1205 aa12.19□□□□□ -0.46
LINC00239-201ENST00000556973 TLR3O15455 904 aaKnown RBP12.19□□□□□ -0.46
LINC00239-201ENST00000556973 PQBP1O60828 265 aaKnown RBP12.19□□□□□ -0.46
LINC00239-201ENST00000556973 CLTBP09497 229 aa12.19□□□□□ -0.46
LINC00239-201ENST00000556973 FDPSP14324 419 aaKnown RBP12.19□□□□□ -0.46
LINC00239-201ENST00000556973 SYN1P17600 705 aa12.19□□□□□ -0.46
LINC00239-201ENST00000556973 PSMC6P62333 389 aa12.19□□□□□ -0.46
LINC00239-201ENST00000556973 ARHGAP4P98171 946 aa12.19□□□□□ -0.46
LINC00239-201ENST00000556973 FAAP100Q0VG06 881 aa12.19□□□□□ -0.46
LINC00239-201ENST00000556973 CEP55Q53EZ4 464 aa12.19□□□□□ -0.46
LINC00239-201ENST00000556973 METTL7BQ6UX53 244 aa12.19□□□□□ -0.46
LINC00239-201ENST00000556973 CYFIP1Q7L576 1253 aa12.19□□□□□ -0.46
LINC00239-201ENST00000556973 NIPA1Q7RTP0 329 aa12.19□□□□□ -0.46
LINC00239-201ENST00000556973 BLIDQ8IZY5 108 aa12.19□□□□□ -0.46
LINC00239-201ENST00000556973 DAGLBQ8NCG7 672 aa12.19□□□□□ -0.46
LINC00239-201ENST00000556973 NSUN7Q8NE18 718 aaKnown RBP12.19□□□□□ -0.46
LINC00239-201ENST00000556973 CRYGNQ8WXF5 182 aa12.19□□□□□ -0.46
LINC00239-201ENST00000556973 AIFM3Q96NN9 605 aa12.19□□□□□ -0.46
LINC00239-201ENST00000556973 PHF20Q9BVI0 1012 aa12.19□□□□□ -0.46
LINC00239-201ENST00000556973 BCAS3Q9H6U6 928 aa12.19□□□□□ -0.46
LINC00239-201ENST00000556973 ZMYND8Q9ULU4 1186 aaPredicted RBP12.19□□□□□ -0.46
LINC00239-201ENST00000556973 M0R2N6 131 aa12.18□□□□□ -0.46
LINC00239-201ENST00000556973 ATP9AO75110 1047 aa12.18□□□□□ -0.46
LINC00239-201ENST00000556973 CD4P01730 458 aa12.18□□□□□ -0.46
LINC00239-201ENST00000556973 HOXD8P13378 290 aaPredicted RBP12.18□□□□□ -0.46
LINC00239-201ENST00000556973 KCNA2P16389 499 aa12.18□□□□□ -0.46
LINC00239-201ENST00000556973 USP11P51784 963 aa12.18□□□□□ -0.46
LINC00239-201ENST00000556973 PTPN11Q06124 597 aaPredicted RBP12.18□□□□□ -0.46
LINC00239-201ENST00000556973 NBPF20Q3BBV1 942 aa12.18□□□□□ -0.46
LINC00239-201ENST00000556973 NFRKBQ6P4R8 1299 aa12.18□□□□□ -0.46
LINC00239-201ENST00000556973 FAM126BQ8IXS8 530 aa12.18□□□□□ -0.46
LINC00239-201ENST00000556973 CYP2W1Q8TAV3 490 aa12.18□□□□□ -0.46
LINC00239-201ENST00000556973 LLPHQ9BRT6 129 aaKnown RBP12.18□□□□□ -0.46
LINC00239-201ENST00000556973 ALG1Q9BT22 464 aa12.18□□□□□ -0.46
LINC00239-201ENST00000556973 KATNAL1Q9BW62 490 aa12.18□□□□□ -0.46
LINC00239-201ENST00000556973 KCNH7Q9NS40 1196 aa12.18□□□□□ -0.46
LINC00239-201ENST00000556973 TMEM39AQ9NV64 488 aa12.18□□□□□ -0.46
LINC00239-201ENST00000556973 NFASCO94856 1347 aa12.17□□□□□ -0.46
LINC00239-201ENST00000556973 NOP56O00567 594 aaKnown RBP12.17□□□□□ -0.46
LINC00239-201ENST00000556973 KIAA0355O15063 1070 aa12.17□□□□□ -0.46
LINC00239-201ENST00000556973 SORBS3O60504 671 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms