RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 RAB11FIP4Q86YS3 637 aa15.09■□□□□ 0.01
SHMT2-226ENST00000556825 TRMT44Q8IYL2 757 aaKnown RBP15.09■□□□□ 0.01
SHMT2-226ENST00000556825 KIF2BQ8N4N8 673 aa15.09■□□□□ 0.01
SHMT2-226ENST00000556825 USHBP1Q8N6Y0 703 aa15.09■□□□□ 0.01
SHMT2-226ENST00000556825 RHPN1Q8TCX5 695 aa15.09■□□□□ 0.01
SHMT2-226ENST00000556825 ABTB1Q969K4 478 aaPredicted RBP15.09■□□□□ 0.01
SHMT2-226ENST00000556825 CTAGE1Q96RT6 745 aa15.09■□□□□ 0.01
SHMT2-226ENST00000556825 CCDC28BQ9BUN5 200 aa15.09■□□□□ 0.01
SHMT2-226ENST00000556825 CYP39A1Q9NYL5 469 aa15.09■□□□□ 0.01
SHMT2-226ENST00000556825 INTUQ9ULD6 942 aa15.09■□□□□ 0.01
SHMT2-226ENST00000556825 EID1Q9Y6B2 187 aa15.09■□□□□ 0.01
SHMT2-226ENST00000556825 TAF6LQ9Y6J9 622 aa15.09■□□□□ 0.01
SHMT2-226ENST00000556825 TIMM44O43615 452 aa15.09■□□□□ 0.01
SHMT2-226ENST00000556825 FLT3P36888 993 aa15.09■□□□□ 0.01
SHMT2-226ENST00000556825 MATR3P43243 847 aaKnown RBP eCLIP15.09■□□□□ 0.01
SHMT2-226ENST00000556825 HERVK_113P62684 666 aa15.09■□□□□ 0.01
SHMT2-226ENST00000556825 PPARDQ03181 441 aa15.09■□□□□ 0.01
SHMT2-226ENST00000556825 NSUN2Q08J23 767 aaKnown RBP eCLIP15.09■□□□□ 0.01
SHMT2-226ENST00000556825 MAP7Q14244 749 aa15.09■□□□□ 0.01
SHMT2-226ENST00000556825 KRT32Q14532 448 aa15.09■□□□□ 0.01
SHMT2-226ENST00000556825 RCN1Q15293 331 aa15.09■□□□□ 0.01
SHMT2-226ENST00000556825 MEX3CQ5U5Q3 659 aaKnown RBP15.09■□□□□ 0.01
SHMT2-226ENST00000556825 PEX5LQ8IYB4 626 aa15.09■□□□□ 0.01
SHMT2-226ENST00000556825 ENDOVQ8N8Q3 282 aaKnown RBP15.09■□□□□ 0.01
SHMT2-226ENST00000556825 HAUS1Q96CS2 278 aa15.09■□□□□ 0.01
SHMT2-226ENST00000556825 PBKQ96KB5 322 aa15.09■□□□□ 0.01
SHMT2-226ENST00000556825 AGBL1Q96MI9 1066 aa15.09■□□□□ 0.01
SHMT2-226ENST00000556825 MED15Q96RN5 788 aa15.09■□□□□ 0.01
SHMT2-226ENST00000556825 OSBPL10Q9BXB5 764 aa15.09■□□□□ 0.01
SHMT2-226ENST00000556825 MAN1B1Q9UKM7 699 aa15.09■□□□□ 0.01
SHMT2-226ENST00000556825 TMEM110-MUSTN1A8MSY1 372 aa15.08■□□□□ 0
SHMT2-226ENST00000556825 H0YGN5 161 aa15.08■□□□□ 0
SHMT2-226ENST00000556825 WASLO00401 505 aaPredicted RBP15.08■□□□□ 0
SHMT2-226ENST00000556825 PEX11AO75192 247 aa15.08■□□□□ 0
SHMT2-226ENST00000556825 TPPPO94811 219 aa15.08■□□□□ 0
SHMT2-226ENST00000556825 FBLN1P23142 703 aa15.08■□□□□ 0
SHMT2-226ENST00000556825 GUCY2FP51841 1108 aa15.08■□□□□ 0
SHMT2-226ENST00000556825 SLC9C2Q5TAH2 1124 aa15.08■□□□□ 0
SHMT2-226ENST00000556825 TAF4BQ92750 862 aa15.08■□□□□ 0
SHMT2-226ENST00000556825 MAML3Q96JK9 1138 aa15.08■□□□□ 0
SHMT2-226ENST00000556825 ZNF333Q96JL9 665 aa15.08■□□□□ 0
SHMT2-226ENST00000556825 RAB3IPQ96QF0 476 aaPredicted RBP15.08■□□□□ 0
SHMT2-226ENST00000556825 NAP1L3Q99457 506 aaPredicted RBP15.08■□□□□ 0
SHMT2-226ENST00000556825 RETREG1Q9H6L5 497 aa15.08■□□□□ 0
SHMT2-226ENST00000556825 NFS1Q9Y697 457 aa15.08■□□□□ 0
SHMT2-226ENST00000556825 PLEKHG1Q9ULL1 1385 aa15.08■□□□□ 0
SHMT2-226ENST00000556825 TECPR2O15040 1411 aa15.08■□□□□ 0
SHMT2-226ENST00000556825 KIF20BQ96Q89 1820 aa15.08■□□□□ 0
SHMT2-226ENST00000556825 TJP3O95049 919 aa15.08■□□□□ 0
SHMT2-226ENST00000556825 LDHAP00338 332 aaKnown RBP15.08■□□□□ 0
SHMT2-226ENST00000556825 CHGBP05060 677 aa15.08■□□□□ 0
SHMT2-226ENST00000556825 GEMIN4P57678 1058 aaKnown RBP15.08■□□□□ 0
SHMT2-226ENST00000556825 PPARAQ07869 468 aa15.08■□□□□ 0
SHMT2-226ENST00000556825 MUM1Q2TAK8 710 aa15.08■□□□□ 0
SHMT2-226ENST00000556825 SOGA3Q5TF21 947 aa15.08■□□□□ 0
SHMT2-226ENST00000556825 DAB2IPQ5VWQ8 1189 aa15.08■□□□□ 0
SHMT2-226ENST00000556825 IFT81Q8WYA0 676 aa15.08■□□□□ 0
SHMT2-226ENST00000556825 GATA6Q92908 595 aa15.08■□□□□ 0
SHMT2-226ENST00000556825 PFDN4Q9NQP4 134 aa15.08■□□□□ 0
SHMT2-226ENST00000556825 CYP1A1P04798 512 aaPredicted RBP15.07■□□□□ 0
SHMT2-226ENST00000556825 ERCC5P28715 1186 aaPredicted RBP15.07■□□□□ 0
SHMT2-226ENST00000556825 PTDSS1P48651 473 aaKnown RBP15.07■□□□□ 0
SHMT2-226ENST00000556825 ARPC4P59998 168 aa15.07■□□□□ 0
SHMT2-226ENST00000556825 KRT83P78385 493 aa15.07■□□□□ 0
SHMT2-226ENST00000556825 TRIM14Q14142 442 aa15.07■□□□□ 0
SHMT2-226ENST00000556825 ZNF362Q5T0B9 420 aaPredicted RBP15.07■□□□□ 0
SHMT2-226ENST00000556825 BEND3Q5T5X7 828 aa15.07■□□□□ 0
SHMT2-226ENST00000556825 SYDE2Q5VT97 1194 aa15.07■□□□□ 0
SHMT2-226ENST00000556825 ANO1Q5XXA6 986 aa15.07■□□□□ 0
SHMT2-226ENST00000556825 GRAMD4Q6IC98 578 aa15.07■□□□□ 0
SHMT2-226ENST00000556825 C3orf67Q6ZVT6 689 aa15.07■□□□□ 0
SHMT2-226ENST00000556825 PALB2Q86YC2 1186 aa15.07■□□□□ 0
SHMT2-226ENST00000556825 CHP1Q99653 195 aa15.07■□□□□ 0
SHMT2-226ENST00000556825 SIKE1Q9BRV8 207 aa15.07■□□□□ 0
SHMT2-226ENST00000556825 EIF2AQ9BY44 585 aaKnown RBP15.07■□□□□ 0
SHMT2-226ENST00000556825 LARSQ9P2J5 1176 aaKnown RBP15.07■□□□□ 0
SHMT2-226ENST00000556825 USH1CQ9Y6N9 552 aa15.07■□□□□ 0
SHMT2-226ENST00000556825 ADAMTS13Q76LX8 1427 aa15.07■□□□□ 0
SHMT2-226ENST00000556825 F6X3S4 739 aa15.07■□□□□ 0
SHMT2-226ENST00000556825 CTNND1O60716 968 aaKnown RBP15.07■□□□□ 0
SHMT2-226ENST00000556825 GLI1P08151 1106 aa15.07■□□□□ 0
SHMT2-226ENST00000556825 SKIP12755 728 aa15.07■□□□□ 0
SHMT2-226ENST00000556825 RXRBP28702 533 aa15.07■□□□□ 0
SHMT2-226ENST00000556825 CCT6AP40227 531 aaKnown RBP15.07■□□□□ 0
SHMT2-226ENST00000556825 ZNF844Q08AG5 666 aa15.07■□□□□ 0
SHMT2-226ENST00000556825 RCN2Q14257 317 aa15.07■□□□□ 0
SHMT2-226ENST00000556825 SSH3Q8TE77 659 aa15.07■□□□□ 0
SHMT2-226ENST00000556825 PIGOQ8TEQ8 1089 aa15.07■□□□□ 0
SHMT2-226ENST00000556825 LTV1Q96GA3 475 aaPredicted RBP15.07■□□□□ 0
SHMT2-226ENST00000556825 NEK1Q96PY6 1258 aa15.07■□□□□ 0
SHMT2-226ENST00000556825 SRPK1Q96SB4 655 aaKnown RBP15.07■□□□□ 0
SHMT2-226ENST00000556825 ELAC2Q9BQ52 826 aaKnown RBP15.07■□□□□ 0
SHMT2-226ENST00000556825 NRDE2Q9H7Z3 1164 aa15.07■□□□□ 0
SHMT2-226ENST00000556825 EPB41L5Q9HCM4 733 aa15.07■□□□□ 0
SHMT2-226ENST00000556825 RABL2AQ9UBK7 228 aaPredicted RBP15.07■□□□□ 0
SHMT2-226ENST00000556825 NOVA2Q9UNW9 492 aaKnown RBP15.07■□□□□ 0
SHMT2-226ENST00000556825 SALL1Q9NSC2 1324 aa15.06■□□□□ 0
SHMT2-226ENST00000556825 HIP1O00291 1037 aa15.06■□□□□ 0
SHMT2-226ENST00000556825 NVLO15381 856 aaKnown RBP15.06■□□□□ 0
SHMT2-226ENST00000556825 PORP16435 677 aaPredicted RBP15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms