RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 SMC3Q9UQE7 1217 aa19.94■□□□□ 0.78
SHMT2-225ENST00000556798 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.94■□□□□ 0.78
SHMT2-225ENST00000556798 FAM205CA6NFA0 338 aa19.93■□□□□ 0.78
SHMT2-225ENST00000556798 SPATA31C2B4DYI2 1134 aa19.93■□□□□ 0.78
SHMT2-225ENST00000556798 FAM86B1E9PN63 330 aa19.93■□□□□ 0.78
SHMT2-225ENST00000556798 FIBPO43427 364 aa19.93■□□□□ 0.78
SHMT2-225ENST00000556798 FAM86B2P0C5J1 330 aa19.93■□□□□ 0.78
SHMT2-225ENST00000556798 ICAM3P32942 547 aa19.93■□□□□ 0.78
SHMT2-225ENST00000556798 ARHGAP1Q07960 439 aa19.93■□□□□ 0.78
SHMT2-225ENST00000556798 MTMR1Q13613 665 aa19.93■□□□□ 0.78
SHMT2-225ENST00000556798 FSCN1Q16658 493 aaKnown RBP19.93■□□□□ 0.78
SHMT2-225ENST00000556798 KRT25Q7Z3Z0 450 aa19.93■□□□□ 0.78
SHMT2-225ENST00000556798 HSCBQ8IWL3 235 aa19.93■□□□□ 0.78
SHMT2-225ENST00000556798 DIS3L2Q8IYB7 885 aaKnown RBP19.93■□□□□ 0.78
SHMT2-225ENST00000556798 TBCKQ8TEA7 893 aa19.93■□□□□ 0.78
SHMT2-225ENST00000556798 GPRASP2Q96D09 838 aa19.93■□□□□ 0.78
SHMT2-225ENST00000556798 MXRA8Q9BRK3 442 aa19.93■□□□□ 0.78
SHMT2-225ENST00000556798 BRMS1Q9HCU9 246 aa19.93■□□□□ 0.78
SHMT2-225ENST00000556798 JADE2Q9NQC1 790 aa19.93■□□□□ 0.78
SHMT2-225ENST00000556798 FOXD4L1Q9NU39 408 aa19.93■□□□□ 0.78
SHMT2-225ENST00000556798 Q9Y3F1 56 aa19.93■□□□□ 0.78
SHMT2-225ENST00000556798 CCDC194A0A1B0GVG4 234 aa19.92■□□□□ 0.78
SHMT2-225ENST00000556798 BTBD18B2RXH4 712 aa19.92■□□□□ 0.78
SHMT2-225ENST00000556798 EDIL3O43854 480 aa19.92■□□□□ 0.78
SHMT2-225ENST00000556798 GGPS1O95749 300 aa19.92■□□□□ 0.78
SHMT2-225ENST00000556798 GH1P01241 217 aa19.92■□□□□ 0.78
SHMT2-225ENST00000556798 CYP3A4P08684 503 aa19.92■□□□□ 0.78
SHMT2-225ENST00000556798 CAPN2P17655 700 aa19.92■□□□□ 0.78
SHMT2-225ENST00000556798 CST5P28325 142 aaPredicted RBP19.92■□□□□ 0.78
SHMT2-225ENST00000556798 NONOQ15233 471 aaKnown RBP eCLIP19.92■□□□□ 0.78
SHMT2-225ENST00000556798 KCNA10Q16322 511 aa19.92■□□□□ 0.78
SHMT2-225ENST00000556798 INF2Q27J81 1249 aa19.92■□□□□ 0.78
SHMT2-225ENST00000556798 CEP55Q53EZ4 464 aa19.92■□□□□ 0.78
SHMT2-225ENST00000556798 EARS2Q5JPH6 523 aaKnown RBP19.92■□□□□ 0.78
SHMT2-225ENST00000556798 GNASQ5JWF2 1037 aa19.92■□□□□ 0.78
SHMT2-225ENST00000556798 IFFO2Q5TF58 517 aa19.92■□□□□ 0.78
SHMT2-225ENST00000556798 KCNV1Q6PIU1 500 aa19.92■□□□□ 0.78
SHMT2-225ENST00000556798 PIK3AP1Q6ZUJ8 805 aa19.92■□□□□ 0.78
SHMT2-225ENST00000556798 NECAB2Q7Z6G3 386 aa19.92■□□□□ 0.78
SHMT2-225ENST00000556798 TNFRSF25Q93038 417 aa19.92■□□□□ 0.78
SHMT2-225ENST00000556798 FERMT2Q96AC1 680 aa19.92■□□□□ 0.78
SHMT2-225ENST00000556798 C11orf49Q9H6J7 331 aa19.92■□□□□ 0.78
SHMT2-225ENST00000556798 BCAS3Q9H6U6 928 aa19.92■□□□□ 0.78
SHMT2-225ENST00000556798 ATP9AO75110 1047 aa19.91■□□□□ 0.78
SHMT2-225ENST00000556798 ARP10275 920 aa19.91■□□□□ 0.78
SHMT2-225ENST00000556798 CCSAPQ6IQ19 270 aaPredicted RBP19.91■□□□□ 0.78
SHMT2-225ENST00000556798 DHX37Q8IY37 1157 aaKnown RBP19.91■□□□□ 0.78
SHMT2-225ENST00000556798 FBXO18Q8NFZ0 1043 aa19.91■□□□□ 0.78
SHMT2-225ENST00000556798 AFG1LQ8WV93 481 aa19.91■□□□□ 0.78
SHMT2-225ENST00000556798 UIMC1Q96RL1 719 aa19.91■□□□□ 0.78
SHMT2-225ENST00000556798 WDR81Q562E7 1941 aa19.9■□□□□ 0.78
SHMT2-225ENST00000556798 DNAH12Q6ZR08 3092 aa19.9■□□□□ 0.78
SHMT2-225ENST00000556798 IGLV3-22A0A075B6J6 115 aa19.9■□□□□ 0.78
SHMT2-225ENST00000556798 TGFB3P10600 412 aa19.9■□□□□ 0.78
SHMT2-225ENST00000556798 COL6A1P12109 1028 aa19.9■□□□□ 0.78
SHMT2-225ENST00000556798 KCNA2P16389 499 aa19.9■□□□□ 0.78
SHMT2-225ENST00000556798 ACLYP53396 1101 aa19.9■□□□□ 0.78
SHMT2-225ENST00000556798 NKX3-2P78367 333 aa19.9■□□□□ 0.78
SHMT2-225ENST00000556798 SAFBQ15424 915 aaKnown RBP eCLIP19.9■□□□□ 0.78
SHMT2-225ENST00000556798 CELF3Q5SZQ8 465 aaKnown RBP19.9■□□□□ 0.78
SHMT2-225ENST00000556798 PLA2G4DQ86XP0 818 aa19.9■□□□□ 0.78
SHMT2-225ENST00000556798 SENP6Q9GZR1 1112 aaPredicted RBP19.9■□□□□ 0.78
SHMT2-225ENST00000556798 KCNH7Q9NS40 1196 aa19.9■□□□□ 0.78
SHMT2-225ENST00000556798 PHF24Q9UPV7 400 aa19.9■□□□□ 0.78
SHMT2-225ENST00000556798 KIF3AQ9Y496 699 aa19.9■□□□□ 0.78
SHMT2-225ENST00000556798 A0A1W2PQ45 241 aaPredicted RBP19.89■□□□□ 0.77
SHMT2-225ENST00000556798 A0A1W2PQY0 241 aa19.89■□□□□ 0.77
SHMT2-225ENST00000556798 MEIS1O00470 390 aa19.89■□□□□ 0.77
SHMT2-225ENST00000556798 TDP2O95551 362 aa19.89■□□□□ 0.77
SHMT2-225ENST00000556798 ASGR1P07306 291 aa19.89■□□□□ 0.77
SHMT2-225ENST00000556798 MMP3P08254 477 aa19.89■□□□□ 0.77
SHMT2-225ENST00000556798 RGS19P49795 217 aa19.89■□□□□ 0.77
SHMT2-225ENST00000556798 CPT1AP50416 773 aa19.89■□□□□ 0.77
SHMT2-225ENST00000556798 SP4Q02446 784 aa19.89■□□□□ 0.77
SHMT2-225ENST00000556798 PRR16Q569H4 304 aa19.89■□□□□ 0.77
SHMT2-225ENST00000556798 MYSM1Q5VVJ2 828 aa19.89■□□□□ 0.77
SHMT2-225ENST00000556798 CYFIP1Q7L576 1253 aa19.89■□□□□ 0.77
SHMT2-225ENST00000556798 PCSK9Q8NBP7 692 aaKnown RBP19.89■□□□□ 0.77
SHMT2-225ENST00000556798 CDHR1Q96JP9 859 aa19.89■□□□□ 0.77
SHMT2-225ENST00000556798 MLXIPQ9HAP2 919 aa19.89■□□□□ 0.77
SHMT2-225ENST00000556798 TELO2Q9Y4R8 837 aa19.89■□□□□ 0.77
SHMT2-225ENST00000556798 SCN10AQ9Y5Y9 1956 aa19.88■□□□□ 0.77
SHMT2-225ENST00000556798 MOXD2PA6NHM9 499 aa19.88■□□□□ 0.77
SHMT2-225ENST00000556798 A6NJR5 290 aa19.88■□□□□ 0.77
SHMT2-225ENST00000556798 MYL3P08590 195 aa19.88■□□□□ 0.77
SHMT2-225ENST00000556798 CIITAP33076 1130 aa19.88■□□□□ 0.77
SHMT2-225ENST00000556798 USP11P51784 963 aa19.88■□□□□ 0.77
SHMT2-225ENST00000556798 LAMC2Q13753 1193 aa19.88■□□□□ 0.77
SHMT2-225ENST00000556798 NEDD9Q14511 834 aa19.88■□□□□ 0.77
SHMT2-225ENST00000556798 LETM2Q2VYF4 491 aa19.88■□□□□ 0.77
SHMT2-225ENST00000556798 CXCL17Q6UXB2 119 aa19.88■□□□□ 0.77
SHMT2-225ENST00000556798 NIPA1Q7RTP0 329 aa19.88■□□□□ 0.77
SHMT2-225ENST00000556798 EMID1Q96A84 441 aaPredicted RBP19.88■□□□□ 0.77
SHMT2-225ENST00000556798 SPATA33Q96N06 139 aa19.88■□□□□ 0.77
SHMT2-225ENST00000556798 TSEN34Q9BSV6 310 aaKnown RBP19.88■□□□□ 0.77
SHMT2-225ENST00000556798 AGO4Q9HCK5 861 aaKnown RBP19.88■□□□□ 0.77
SHMT2-225ENST00000556798 TNRC18O15417 2968 aaPredicted RBP19.88■□□□□ 0.77
SHMT2-225ENST00000556798 KIF28PB7ZC32 967 aa19.87■□□□□ 0.77
SHMT2-225ENST00000556798 ZEB2O60315 1214 aa19.87■□□□□ 0.77
SHMT2-225ENST00000556798 ATN1P54259 1190 aaPredicted RBP19.87■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 347.1 ms