RNA–Protein interactions for RNA: ENST00000556083.1

ACTN1-216, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 4,674 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-216ENST00000556083 BTBD18B2RXH4 712 aa11.63□□□□□ -0.55
ACTN1-216ENST00000556083 PGRMC1O00264 195 aaKnown RBP11.63□□□□□ -0.55
ACTN1-216ENST00000556083 BCAMP50895 628 aa11.63□□□□□ -0.55
ACTN1-216ENST00000556083 POLA2Q14181 598 aa11.63□□□□□ -0.55
ACTN1-216ENST00000556083 GCNAQ96QF7 691 aa11.63□□□□□ -0.55
ACTN1-216ENST00000556083 TRIM31Q9BZY9 425 aa11.63□□□□□ -0.55
ACTN1-216ENST00000556083 TBC1D22BQ9NU19 505 aa11.63□□□□□ -0.55
ACTN1-216ENST00000556083 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.63□□□□□ -0.55
ACTN1-216ENST00000556083 GSTA1P08263 222 aa11.63□□□□□ -0.55
ACTN1-216ENST00000556083 GSTA2P09210 222 aa11.63□□□□□ -0.55
ACTN1-216ENST00000556083 DDX5P17844 614 aaKnown RBP11.63□□□□□ -0.55
ACTN1-216ENST00000556083 COG7P83436 770 aa11.63□□□□□ -0.55
ACTN1-216ENST00000556083 NR1H3Q13133 447 aa11.63□□□□□ -0.55
ACTN1-216ENST00000556083 USPL1Q5W0Q7 1092 aa11.63□□□□□ -0.55
ACTN1-216ENST00000556083 MAEAQ7L5Y9 396 aa11.63□□□□□ -0.55
ACTN1-216ENST00000556083 WHAMMQ8TF30 809 aa11.63□□□□□ -0.55
ACTN1-216ENST00000556083 SYMPKQ92797 1274 aaKnown RBP11.63□□□□□ -0.55
ACTN1-216ENST00000556083 TBC1D7Q9P0N9 293 aa11.63□□□□□ -0.55
ACTN1-216ENST00000556083 SRPRBQ9Y5M8 271 aaKnown RBP11.63□□□□□ -0.55
ACTN1-216ENST00000556083 CAV1Q03135 178 aa11.63□□□□□ -0.55
ACTN1-216ENST00000556083 SCYL2Q6P3W7 929 aa11.63□□□□□ -0.55
ACTN1-216ENST00000556083 KIAA0825Q8IV33 1275 aa11.63□□□□□ -0.55
ACTN1-216ENST00000556083 NLRP7Q8WX94 980 aa11.63□□□□□ -0.55
ACTN1-216ENST00000556083 BLZF1Q9H2G9 400 aa11.63□□□□□ -0.55
ACTN1-216ENST00000556083 ERBB3P21860 1342 aa11.63□□□□□ -0.55
ACTN1-216ENST00000556083 ARAP3Q8WWN8 1544 aa11.63□□□□□ -0.55
ACTN1-216ENST00000556083 GOLGA8MH3BSY2 632 aa11.63□□□□□ -0.55
ACTN1-216ENST00000556083 MMP1P03956 469 aa11.63□□□□□ -0.55
ACTN1-216ENST00000556083 RXRBP28702 533 aa11.63□□□□□ -0.55
ACTN1-216ENST00000556083 DEUP1Q05D60 604 aa11.63□□□□□ -0.55
ACTN1-216ENST00000556083 RSRC2Q7L4I2 434 aaKnown RBP11.63□□□□□ -0.55
ACTN1-216ENST00000556083 MASTLQ96GX5 879 aa11.63□□□□□ -0.55
ACTN1-216ENST00000556083 FAM20AQ96MK3 541 aa11.63□□□□□ -0.55
ACTN1-216ENST00000556083 TOPORSQ9NS56 1045 aaPredicted RBP11.63□□□□□ -0.55
ACTN1-216ENST00000556083 FGFR1OP2Q9NVK5 253 aa11.63□□□□□ -0.55
ACTN1-216ENST00000556083 CDHR2Q9BYE9 1310 aa11.63□□□□□ -0.55
ACTN1-216ENST00000556083 USP17L3A6NCW0 530 aa11.62□□□□□ -0.55
ACTN1-216ENST00000556083 USP17L4A6NCW7 530 aa11.62□□□□□ -0.55
ACTN1-216ENST00000556083 ADD1P35611 737 aaKnown RBP11.62□□□□□ -0.55
ACTN1-216ENST00000556083 ANKRD20A4Q4UJ75 823 aa11.62□□□□□ -0.55
ACTN1-216ENST00000556083 ANKRD20A8PQ5CZ79 823 aa11.62□□□□□ -0.55
ACTN1-216ENST00000556083 ANKRD20A2Q5SQ80 823 aa11.62□□□□□ -0.55
ACTN1-216ENST00000556083 ANKRD20A1Q5TYW2 823 aa11.62□□□□□ -0.55
ACTN1-216ENST00000556083 USP17L1Q7RTZ2 530 aa11.62□□□□□ -0.55
ACTN1-216ENST00000556083 TIPINQ9BVW5 301 aa11.62□□□□□ -0.55
ACTN1-216ENST00000556083 KIAA1024Q9UPX6 916 aa11.62□□□□□ -0.55
ACTN1-216ENST00000556083 SFNP31947 248 aa11.62□□□□□ -0.55
ACTN1-216ENST00000556083 EAPPQ56P03 285 aaPredicted RBP11.62□□□□□ -0.55
ACTN1-216ENST00000556083 KCNV1Q6PIU1 500 aa11.62□□□□□ -0.55
ACTN1-216ENST00000556083 PROCA1Q8NCQ7 364 aaPredicted RBP11.62□□□□□ -0.55
ACTN1-216ENST00000556083 C2orf40Q9H1Z8 148 aa11.62□□□□□ -0.55
ACTN1-216ENST00000556083 SUGCTQ9HAC7 445 aa11.62□□□□□ -0.55
ACTN1-216ENST00000556083 LRRC4Q9HBW1 653 aa11.62□□□□□ -0.55
ACTN1-216ENST00000556083 MRPL40Q9NQ50 206 aaKnown RBP11.62□□□□□ -0.55
ACTN1-216ENST00000556083 HOXC10Q9NYD6 342 aa11.62□□□□□ -0.55
ACTN1-216ENST00000556083 H7C0C1 242 aa11.62□□□□□ -0.55
ACTN1-216ENST00000556083 SERPING1P05155 500 aa11.62□□□□□ -0.55
ACTN1-216ENST00000556083 ANXA13P27216 316 aa11.62□□□□□ -0.55
ACTN1-216ENST00000556083 ATP5OP48047 213 aa11.62□□□□□ -0.55
ACTN1-216ENST00000556083 NAA25Q14CX7 972 aa11.62□□□□□ -0.55
ACTN1-216ENST00000556083 CIAPIN1Q6FI81 312 aa11.62□□□□□ -0.55
ACTN1-216ENST00000556083 LRRC8AQ8IWT6 810 aa11.62□□□□□ -0.55
ACTN1-216ENST00000556083 PANX2Q96RD6 677 aa11.62□□□□□ -0.55
ACTN1-216ENST00000556083 TRPV6Q9H1D0 765 aa11.62□□□□□ -0.55
ACTN1-216ENST00000556083 RPS6KA4O75676 772 aa11.62□□□□□ -0.55
ACTN1-216ENST00000556083 MECOMQ03112 1051 aa11.62□□□□□ -0.55
ACTN1-216ENST00000556083 TFDP2Q14188 446 aa11.62□□□□□ -0.55
ACTN1-216ENST00000556083 VPS39Q96JC1 886 aa11.62□□□□□ -0.55
ACTN1-216ENST00000556083 STRIP2Q9ULQ0 834 aa11.62□□□□□ -0.55
ACTN1-216ENST00000556083 PCDHB4Q9Y5E5 795 aa11.62□□□□□ -0.55
ACTN1-216ENST00000556083 PODXLO00592 558 aa11.61□□□□□ -0.55
ACTN1-216ENST00000556083 ECEL1O95672 775 aa11.61□□□□□ -0.55
ACTN1-216ENST00000556083 MAPK4P31152 587 aa11.61□□□□□ -0.55
ACTN1-216ENST00000556083 IFNA8P32881 189 aa11.61□□□□□ -0.55
ACTN1-216ENST00000556083 PDE1BQ01064 536 aa11.61□□□□□ -0.55
ACTN1-216ENST00000556083 ELF2Q15723 593 aa11.61□□□□□ -0.55
ACTN1-216ENST00000556083 ARHGAP27Q6ZUM4 889 aa11.61□□□□□ -0.55
ACTN1-216ENST00000556083 ENOSF1Q7L5Y1 443 aa11.61□□□□□ -0.55
ACTN1-216ENST00000556083 NLRP10Q86W26 655 aa11.61□□□□□ -0.55
ACTN1-216ENST00000556083 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.61□□□□□ -0.55
ACTN1-216ENST00000556083 GREM2Q9H772 168 aa11.61□□□□□ -0.55
ACTN1-216ENST00000556083 SAMD9LQ8IVG5 1584 aa11.61□□□□□ -0.55
ACTN1-216ENST00000556083 PVALEFA0A1B0GWK0 134 aa11.61□□□□□ -0.55
ACTN1-216ENST00000556083 MXI1P50539 228 aa11.61□□□□□ -0.55
ACTN1-216ENST00000556083 KRT76Q01546 638 aa11.61□□□□□ -0.55
ACTN1-216ENST00000556083 CUL1Q13616 776 aa11.61□□□□□ -0.55
ACTN1-216ENST00000556083 ALS2CLQ60I27 953 aa11.61□□□□□ -0.55
ACTN1-216ENST00000556083 KRT27Q7Z3Y8 459 aa11.61□□□□□ -0.55
ACTN1-216ENST00000556083 EFHBQ8N7U6 833 aa11.61□□□□□ -0.55
ACTN1-216ENST00000556083 GBP7Q8N8V2 638 aaPredicted RBP11.61□□□□□ -0.55
ACTN1-216ENST00000556083 PLEKHF1Q96S99 279 aa11.61□□□□□ -0.55
ACTN1-216ENST00000556083 SEPT9Q9UHD8 586 aaPredicted RBP11.61□□□□□ -0.55
ACTN1-216ENST00000556083 TCP10L2B9ZVM9 353 aa11.61□□□□□ -0.55
ACTN1-216ENST00000556083 SH2B2O14492 632 aaPredicted RBP11.61□□□□□ -0.55
ACTN1-216ENST00000556083 DNAJC24Q6P3W2 148 aa11.61□□□□□ -0.55
ACTN1-216ENST00000556083 PCGF5Q86SE9 256 aa11.61□□□□□ -0.55
ACTN1-216ENST00000556083 LRRC47Q8N1G4 583 aaKnown RBP11.61□□□□□ -0.55
ACTN1-216ENST00000556083 NME8Q8N427 588 aa11.61□□□□□ -0.55
ACTN1-216ENST00000556083 GTF3C2Q8WUA4 911 aaPredicted RBP11.61□□□□□ -0.55
ACTN1-216ENST00000556083 QTRT2Q9H974 415 aaKnown RBP11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms