RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 SLC39A5Q6ZMH5 540 aa16.25■□□□□ 0.19
SHMT2-217ENST00000555116 CCDC83Q8IWF9 413 aa16.25■□□□□ 0.19
SHMT2-217ENST00000555116 BICD2Q8TD16 824 aa16.25■□□□□ 0.19
SHMT2-217ENST00000555116 RASGRP4Q8TDF6 673 aa16.25■□□□□ 0.19
SHMT2-217ENST00000555116 CRYGNQ8WXF5 182 aa16.25■□□□□ 0.19
SHMT2-217ENST00000555116 DPF3Q92784 378 aa16.25■□□□□ 0.19
SHMT2-217ENST00000555116 A6NJR5 290 aa16.25■□□□□ 0.19
SHMT2-217ENST00000555116 ITGB5P18084 799 aa16.25■□□□□ 0.19
SHMT2-217ENST00000555116 SNX17Q15036 470 aa16.25■□□□□ 0.19
SHMT2-217ENST00000555116 MCTP2Q6DN12 878 aa16.25■□□□□ 0.19
SHMT2-217ENST00000555116 DAGLBQ8NCG7 672 aa16.25■□□□□ 0.19
SHMT2-217ENST00000555116 EMID1Q96A84 441 aaPredicted RBP16.25■□□□□ 0.19
SHMT2-217ENST00000555116 PCDHA4Q9UN74 947 aa16.25■□□□□ 0.19
SHMT2-217ENST00000555116 FIBPO43427 364 aa16.24■□□□□ 0.19
SHMT2-217ENST00000555116 UBA1P22314 1058 aaKnown RBP16.24■□□□□ 0.19
SHMT2-217ENST00000555116 CPT1AP50416 773 aa16.24■□□□□ 0.19
SHMT2-217ENST00000555116 CXCL17Q6UXB2 119 aa16.24■□□□□ 0.19
SHMT2-217ENST00000555116 GJB4Q9NTQ9 266 aa16.24■□□□□ 0.19
SHMT2-217ENST00000555116 KCNJ14Q9UNX9 436 aa16.24■□□□□ 0.19
SHMT2-217ENST00000555116 M0R2N6 131 aa16.23■□□□□ 0.19
SHMT2-217ENST00000555116 ZEB2O60315 1214 aa16.23■□□□□ 0.19
SHMT2-217ENST00000555116 ARHGAP4P98171 946 aa16.23■□□□□ 0.19
SHMT2-217ENST00000555116 CELF3Q5SZQ8 465 aaKnown RBP16.23■□□□□ 0.19
SHMT2-217ENST00000555116 C1orf53Q5VUE5 145 aa16.23■□□□□ 0.19
SHMT2-217ENST00000555116 GALNT17Q6IS24 598 aa16.23■□□□□ 0.19
SHMT2-217ENST00000555116 NLRX1Q86UT6 975 aa16.23■□□□□ 0.19
SHMT2-217ENST00000555116 BLIDQ8IZY5 108 aa16.23■□□□□ 0.19
SHMT2-217ENST00000555116 AFG1LQ8WV93 481 aa16.23■□□□□ 0.19
SHMT2-217ENST00000555116 WASF1Q92558 559 aa16.23■□□□□ 0.19
SHMT2-217ENST00000555116 GPRASP2Q96D09 838 aa16.23■□□□□ 0.19
SHMT2-217ENST00000555116 ALG1Q9BT22 464 aa16.23■□□□□ 0.19
SHMT2-217ENST00000555116 PHF20Q9BVI0 1012 aa16.23■□□□□ 0.19
SHMT2-217ENST00000555116 BCAS3Q9H6U6 928 aa16.23■□□□□ 0.19
SHMT2-217ENST00000555116 JADE2Q9NQC1 790 aa16.23■□□□□ 0.19
SHMT2-217ENST00000555116 ELP1O95163 1332 aa16.23■□□□□ 0.19
SHMT2-217ENST00000555116 EVI5O60447 810 aa16.22■□□□□ 0.19
SHMT2-217ENST00000555116 GGPS1O95749 300 aa16.22■□□□□ 0.19
SHMT2-217ENST00000555116 CYP3A4P08684 503 aa16.22■□□□□ 0.19
SHMT2-217ENST00000555116 RTP1P59025 263 aa16.22■□□□□ 0.19
SHMT2-217ENST00000555116 LAMC2Q13753 1193 aa16.22■□□□□ 0.19
SHMT2-217ENST00000555116 MYSM1Q5VVJ2 828 aa16.22■□□□□ 0.19
SHMT2-217ENST00000555116 DHX37Q8IY37 1157 aaKnown RBP16.22■□□□□ 0.19
SHMT2-217ENST00000555116 GLT1D1Q96MS3 346 aa16.22■□□□□ 0.19
SHMT2-217ENST00000555116 MXRA8Q9BRK3 442 aa16.22■□□□□ 0.19
SHMT2-217ENST00000555116 LLPHQ9BRT6 129 aaKnown RBP16.22■□□□□ 0.19
SHMT2-217ENST00000555116 STARD7Q9NQZ5 370 aa16.22■□□□□ 0.19
SHMT2-217ENST00000555116 CABYRO75952 493 aa16.22■□□□□ 0.19
SHMT2-217ENST00000555116 MMP3P08254 477 aa16.22■□□□□ 0.19
SHMT2-217ENST00000555116 PURAQ00577 322 aaKnown RBP16.22■□□□□ 0.19
SHMT2-217ENST00000555116 CYP2W1Q8TAV3 490 aa16.22■□□□□ 0.19
SHMT2-217ENST00000555116 POLR3EQ9NVU0 708 aa16.22■□□□□ 0.19
SHMT2-217ENST00000555116 DNAH12Q6ZR08 3092 aa16.21■□□□□ 0.19
SHMT2-217ENST00000555116 EDIL3O43854 480 aa16.21■□□□□ 0.19
SHMT2-217ENST00000555116 SORBS3O60504 671 aa16.21■□□□□ 0.19
SHMT2-217ENST00000555116 MYL3P08590 195 aa16.21■□□□□ 0.19
SHMT2-217ENST00000555116 XBP1P17861 261 aa16.21■□□□□ 0.19
SHMT2-217ENST00000555116 TRIM60Q495X7 471 aa16.21■□□□□ 0.19
SHMT2-217ENST00000555116 BRDTQ58F21 947 aaPredicted RBP16.21■□□□□ 0.19
SHMT2-217ENST00000555116 C7orf61Q8IZ16 206 aa16.21■□□□□ 0.19
SHMT2-217ENST00000555116 PPTC7Q8NI37 304 aa16.21■□□□□ 0.19
SHMT2-217ENST00000555116 SENP7Q9BQF6 1050 aa16.21■□□□□ 0.19
SHMT2-217ENST00000555116 GRIN2DO15399 1336 aa16.21■□□□□ 0.19
SHMT2-217ENST00000555116 MEIS1O00470 390 aa16.2■□□□□ 0.18
SHMT2-217ENST00000555116 KPNA6O60684 536 aa16.2■□□□□ 0.18
SHMT2-217ENST00000555116 ATP9AO75110 1047 aa16.2■□□□□ 0.18
SHMT2-217ENST00000555116 HOXD8P13378 290 aaPredicted RBP16.2■□□□□ 0.18
SHMT2-217ENST00000555116 KCNA2P16389 499 aa16.2■□□□□ 0.18
SHMT2-217ENST00000555116 MCM2P49736 904 aa16.2■□□□□ 0.18
SHMT2-217ENST00000555116 CDK7P50613 346 aa16.2■□□□□ 0.18
SHMT2-217ENST00000555116 MTMR1Q13613 665 aa16.2■□□□□ 0.18
SHMT2-217ENST00000555116 NEDD9Q14511 834 aa16.2■□□□□ 0.18
SHMT2-217ENST00000555116 CEP55Q53EZ4 464 aa16.2■□□□□ 0.18
SHMT2-217ENST00000555116 TMX3Q96JJ7 454 aa16.2■□□□□ 0.18
SHMT2-217ENST00000555116 CDHR1Q96JP9 859 aa16.2■□□□□ 0.18
SHMT2-217ENST00000555116 DAXXQ9UER7 740 aaPredicted RBP16.2■□□□□ 0.18
SHMT2-217ENST00000555116 A0A0U1RQG5 324 aaPredicted RBP16.2■□□□□ 0.18
SHMT2-217ENST00000555116 MAFGO15525 162 aa16.2■□□□□ 0.18
SHMT2-217ENST00000555116 HSDL1Q3SXM5 330 aa16.2■□□□□ 0.18
SHMT2-217ENST00000555116 NIPA1Q7RTP0 329 aa16.2■□□□□ 0.18
SHMT2-217ENST00000555116 SLC43A3Q8NBI5 491 aa16.2■□□□□ 0.18
SHMT2-217ENST00000555116 VTI1AQ96AJ9 217 aa16.2■□□□□ 0.18
SHMT2-217ENST00000555116 SPATA33Q96N06 139 aa16.2■□□□□ 0.18
SHMT2-217ENST00000555116 MTG1Q9BT17 334 aaPredicted RBP16.2■□□□□ 0.18
SHMT2-217ENST00000555116 ATP11BQ9Y2G3 1177 aa16.2■□□□□ 0.18
SHMT2-217ENST00000555116 NR2E3Q9Y5X4 410 aa16.2■□□□□ 0.18
SHMT2-217ENST00000555116 IGLV3-22A0A075B6J6 115 aa16.19■□□□□ 0.18
SHMT2-217ENST00000555116 FAM86B1E9PN63 330 aa16.19■□□□□ 0.18
SHMT2-217ENST00000555116 H0YGN5 161 aa16.19■□□□□ 0.18
SHMT2-217ENST00000555116 ARVCFO00192 962 aa16.19■□□□□ 0.18
SHMT2-217ENST00000555116 FAM86B2P0C5J1 330 aa16.19■□□□□ 0.18
SHMT2-217ENST00000555116 ARP10275 920 aa16.19■□□□□ 0.18
SHMT2-217ENST00000555116 PSMC6P62333 389 aa16.19■□□□□ 0.18
SHMT2-217ENST00000555116 METTL7BQ6UX53 244 aa16.19■□□□□ 0.18
SHMT2-217ENST00000555116 CYFIP1Q7L576 1253 aa16.19■□□□□ 0.18
SHMT2-217ENST00000555116 OXER1Q8TDS5 423 aa16.19■□□□□ 0.18
SHMT2-217ENST00000555116 MLXIPQ9HAP2 919 aa16.19■□□□□ 0.18
SHMT2-217ENST00000555116 KCNH7Q9NS40 1196 aa16.19■□□□□ 0.18
SHMT2-217ENST00000555116 WDR81Q562E7 1941 aa16.19■□□□□ 0.18
SHMT2-217ENST00000555116 CIITAP33076 1130 aa16.18■□□□□ 0.18
SHMT2-217ENST00000555116 ZNF76P36508 570 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms