RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 GGPS1O95749 300 aa18.44■□□□□ 0.54
CCDC88C-209ENST00000554872 CSF2RAP15509 400 aa18.44■□□□□ 0.54
CCDC88C-209ENST00000554872 CDC27P30260 824 aa18.44■□□□□ 0.54
CCDC88C-209ENST00000554872 METAP2P50579 478 aaKnown RBP eCLIP18.44■□□□□ 0.54
CCDC88C-209ENST00000554872 FGD1P98174 961 aa18.44■□□□□ 0.54
CCDC88C-209ENST00000554872 NEDD9Q14511 834 aa18.44■□□□□ 0.54
CCDC88C-209ENST00000554872 WWC2Q6AWC2 1192 aa18.44■□□□□ 0.54
CCDC88C-209ENST00000554872 METTL7BQ6UX53 244 aa18.44■□□□□ 0.54
CCDC88C-209ENST00000554872 HEATR3Q7Z4Q2 680 aa18.44■□□□□ 0.54
CCDC88C-209ENST00000554872 RNPC3Q96LT9 517 aaKnown RBP18.44■□□□□ 0.54
CCDC88C-209ENST00000554872 PPP1R12CQ9BZL4 782 aa18.44■□□□□ 0.54
CCDC88C-209ENST00000554872 WNT8AQ9H1J5 351 aa18.44■□□□□ 0.54
CCDC88C-209ENST00000554872 ZSWIM6Q9HCJ5 1215 aa18.44■□□□□ 0.54
CCDC88C-209ENST00000554872 IL23AQ9NPF7 189 aa18.44■□□□□ 0.54
CCDC88C-209ENST00000554872 TRMT13Q9NUP7 481 aaKnown RBP18.44■□□□□ 0.54
CCDC88C-209ENST00000554872 BARHL2Q9NY43 387 aa18.44■□□□□ 0.54
CCDC88C-209ENST00000554872 TMEM265A0A087WTH1 108 aa18.43■□□□□ 0.54
CCDC88C-209ENST00000554872 PFKMP08237 780 aa18.43■□□□□ 0.54
CCDC88C-209ENST00000554872 CYP2C18P33260 490 aa18.43■□□□□ 0.54
CCDC88C-209ENST00000554872 RBL2Q08999 1139 aa18.43■□□□□ 0.54
CCDC88C-209ENST00000554872 SEMA3FQ13275 785 aa18.43■□□□□ 0.54
CCDC88C-209ENST00000554872 HSDL1Q3SXM5 330 aa18.43■□□□□ 0.54
CCDC88C-209ENST00000554872 TMEM240Q5SV17 173 aa18.43■□□□□ 0.54
CCDC88C-209ENST00000554872 C16orf59Q7L2K0 433 aa18.43■□□□□ 0.54
CCDC88C-209ENST00000554872 CCDC82Q8N4S0 544 aa18.43■□□□□ 0.54
CCDC88C-209ENST00000554872 BRF1Q92994 677 aa18.43■□□□□ 0.54
CCDC88C-209ENST00000554872 GPRASP2Q96D09 838 aa18.43■□□□□ 0.54
CCDC88C-209ENST00000554872 CDHR1Q96JP9 859 aa18.43■□□□□ 0.54
CCDC88C-209ENST00000554872 SPATA33Q96N06 139 aa18.43■□□□□ 0.54
CCDC88C-209ENST00000554872 BUD13Q9BRD0 619 aaKnown RBP eCLIP18.43■□□□□ 0.549e-6■■■■■ 27.7
CCDC88C-209ENST00000554872 RIC8AQ9NPQ8 531 aa18.43■□□□□ 0.54
CCDC88C-209ENST00000554872 TANC1Q9C0D5 1861 aa18.42■□□□□ 0.54
CCDC88C-209ENST00000554872 hCG_1642624A0A1W2PR95 340 aa18.42■□□□□ 0.54
CCDC88C-209ENST00000554872 ESYT2A0FGR8 921 aa18.42■□□□□ 0.54
CCDC88C-209ENST00000554872 SPDYE3A6NKU9 549 aa18.42■□□□□ 0.54
CCDC88C-209ENST00000554872 STXBP3O00186 592 aa18.42■□□□□ 0.54
CCDC88C-209ENST00000554872 FOSP01100 380 aaPredicted RBP18.42■□□□□ 0.54
CCDC88C-209ENST00000554872 CPA1P15085 419 aa18.42■□□□□ 0.54
CCDC88C-209ENST00000554872 APOBRQ0VD83 1088 aa18.42■□□□□ 0.54
CCDC88C-209ENST00000554872 TYW1BQ6NUM6 668 aa18.42■□□□□ 0.54
CCDC88C-209ENST00000554872 RUFY3Q7L099 469 aa18.42■□□□□ 0.54
CCDC88C-209ENST00000554872 GIMAP8Q8ND71 665 aaPredicted RBP18.42■□□□□ 0.54
CCDC88C-209ENST00000554872 GPKOWQ92917 476 aaPredicted RBP eCLIP18.42■□□□□ 0.54
CCDC88C-209ENST00000554872 EHMT1Q9H9B1 1298 aa18.42■□□□□ 0.54
CCDC88C-209ENST00000554872 GTF2IRD1Q9UHL9 959 aa18.42■□□□□ 0.54
CCDC88C-209ENST00000554872 V9GY48 417 aaPredicted RBP18.42■□□□□ 0.54
CCDC88C-209ENST00000554872 UMODL1Q5DID0 1318 aa18.42■□□□□ 0.54
CCDC88C-209ENST00000554872 MAFGO15525 162 aa18.41■□□□□ 0.54
CCDC88C-209ENST00000554872 HOXC8P31273 242 aa18.41■□□□□ 0.54
CCDC88C-209ENST00000554872 RFC2P35250 354 aa18.41■□□□□ 0.54
CCDC88C-209ENST00000554872 PSEN2P49810 448 aa18.41■□□□□ 0.54
CCDC88C-209ENST00000554872 NAPAP54920 295 aa18.41■□□□□ 0.54
CCDC88C-209ENST00000554872 AP3B2Q13367 1082 aa18.41■□□□□ 0.54
CCDC88C-209ENST00000554872 PFKFB3Q16875 520 aaPredicted RBP18.41■□□□□ 0.54
CCDC88C-209ENST00000554872 FAM47CQ5HY64 1035 aa18.41■□□□□ 0.54
CCDC88C-209ENST00000554872 NLRX1Q86UT6 975 aa18.41■□□□□ 0.54
CCDC88C-209ENST00000554872 CAGE1Q8TC20 777 aa18.41■□□□□ 0.54
CCDC88C-209ENST00000554872 HERVK_113Q902F9 699 aa18.41■□□□□ 0.54
CCDC88C-209ENST00000554872 CTAGE1Q96RT6 745 aa18.41■□□□□ 0.54
CCDC88C-209ENST00000554872 C16orf70Q9BSU1 422 aa18.41■□□□□ 0.54
CCDC88C-209ENST00000554872 MLXIPQ9HAP2 919 aa18.41■□□□□ 0.54
CCDC88C-209ENST00000554872 UBIAD1Q9Y5Z9 338 aa18.41■□□□□ 0.54
CCDC88C-209ENST00000554872 MYH7BA7E2Y1 1941 aa18.41■□□□□ 0.54
CCDC88C-209ENST00000554872 ADD1P35611 737 aaKnown RBP18.4■□□□□ 0.54
CCDC88C-209ENST00000554872 CLK2P49760 499 aaKnown RBP18.4■□□□□ 0.54
CCDC88C-209ENST00000554872 BFSP2Q13515 415 aa18.4■□□□□ 0.54
CCDC88C-209ENST00000554872 MFSD10Q14728 455 aa18.4■□□□□ 0.54
CCDC88C-209ENST00000554872 MCTP2Q6DN12 878 aa18.4■□□□□ 0.54
CCDC88C-209ENST00000554872 RPUSD2Q8IZ73 545 aaKnown RBP18.4■□□□□ 0.54
CCDC88C-209ENST00000554872 DEFB123Q8N688 67 aa18.4■□□□□ 0.54
CCDC88C-209ENST00000554872 CCDC155Q8N6L0 562 aa18.4■□□□□ 0.54
CCDC88C-209ENST00000554872 VWCEQ96DN2 955 aa18.4■□□□□ 0.54
CCDC88C-209ENST00000554872 IL17RAQ96F46 866 aa18.4■□□□□ 0.54
CCDC88C-209ENST00000554872 MTMR10Q9NXD2 777 aa18.4■□□□□ 0.54
CCDC88C-209ENST00000554872 PCDHA6Q9UN73 950 aa18.4■□□□□ 0.54
CCDC88C-209ENST00000554872 PCDHA8Q9Y5H6 950 aa18.4■□□□□ 0.54
CCDC88C-209ENST00000554872 HSFX4A0A1B0GTS1 333 aaPredicted RBP18.39■□□□□ 0.53
CCDC88C-209ENST00000554872 HSFX3A0A1B0GWH4 333 aaPredicted RBP18.39■□□□□ 0.53
CCDC88C-209ENST00000554872 PRPF3O43395 683 aaKnown RBP18.39■□□□□ 0.53
CCDC88C-209ENST00000554872 EIF5BO60841 1220 aaKnown RBP18.39■□□□□ 0.53
CCDC88C-209ENST00000554872 ZNF286BP0CG31 522 aa18.39■□□□□ 0.53
CCDC88C-209ENST00000554872 CYP2C9P11712 490 aa18.39■□□□□ 0.53
CCDC88C-209ENST00000554872 SCG2P13521 617 aa18.39■□□□□ 0.53
CCDC88C-209ENST00000554872 ITGB5P18084 799 aa18.39■□□□□ 0.53
CCDC88C-209ENST00000554872 ADCY7P51828 1080 aa18.39■□□□□ 0.53
CCDC88C-209ENST00000554872 NTRK3Q16288 839 aa18.39■□□□□ 0.53
CCDC88C-209ENST00000554872 PTGISQ16647 500 aa18.39■□□□□ 0.53
CCDC88C-209ENST00000554872 UBE2SQ16763 222 aa18.39■□□□□ 0.53
CCDC88C-209ENST00000554872 KIAA0753Q2KHM9 967 aa18.39■□□□□ 0.53
CCDC88C-209ENST00000554872 GDF6Q6KF10 455 aaPredicted RBP18.39■□□□□ 0.53
CCDC88C-209ENST00000554872 GPR20Q99678 358 aa18.39■□□□□ 0.53
CCDC88C-209ENST00000554872 RNF26Q9BY78 433 aaPredicted RBP18.39■□□□□ 0.53
CCDC88C-209ENST00000554872 MTIF3Q9H2K0 278 aaKnown RBP18.39■□□□□ 0.53
CCDC88C-209ENST00000554872 CYP46A1Q9Y6A2 500 aa18.39■□□□□ 0.53
CCDC88C-209ENST00000554872 COL6A3P12111 3177 aa18.38■□□□□ 0.53
CCDC88C-209ENST00000554872 NOP56O00567 594 aaKnown RBP18.38■□□□□ 0.53
CCDC88C-209ENST00000554872 PARNO95453 639 aaKnown RBP18.38■□□□□ 0.53
CCDC88C-209ENST00000554872 KCNA2P16389 499 aa18.38■□□□□ 0.53
CCDC88C-209ENST00000554872 IFNAR1P17181 557 aa18.38■□□□□ 0.53
CCDC88C-209ENST00000554872 PDIA3P30101 505 aaKnown RBP18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms