RNA–Protein interactions for RNA: ENST00000553529.5

SHMT2-206, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-206ENST00000553529 IL23AQ9NPF7 189 aa21.01■□□□□ 0.95
SHMT2-206ENST00000553529 PKD2L1Q9P0L9 805 aa21.01■□□□□ 0.95
SHMT2-206ENST00000553529 HDAC6Q9UBN7 1215 aa21.01■□□□□ 0.95
SHMT2-206ENST00000553529 ZBTB43O43298 467 aa21■□□□□ 0.95
SHMT2-206ENST00000553529 NEFLP07196 543 aa21■□□□□ 0.95
SHMT2-206ENST00000553529 CALM1P0DP23 149 aa21■□□□□ 0.95
SHMT2-206ENST00000553529 CALM2P0DP24 149 aa21■□□□□ 0.95
SHMT2-206ENST00000553529 CALM3P0DP25 149 aa21■□□□□ 0.95
SHMT2-206ENST00000553529 ADD1P35611 737 aaKnown RBP21■□□□□ 0.95
SHMT2-206ENST00000553529 PSEN2P49810 448 aa21■□□□□ 0.95
SHMT2-206ENST00000553529 RASIP1Q5U651 963 aa21■□□□□ 0.95
SHMT2-206ENST00000553529 TRIM50Q86XT4 487 aa21■□□□□ 0.95
SHMT2-206ENST00000553529 BRF1Q92994 677 aa21■□□□□ 0.95
SHMT2-206ENST00000553529 LZTS2Q9BRK4 669 aa21■□□□□ 0.95
SHMT2-206ENST00000553529 TMEM260Q9NX78 707 aa21■□□□□ 0.95
SHMT2-206ENST00000553529 MAP3K20Q9NYL2 800 aaKnown RBP21■□□□□ 0.95
SHMT2-206ENST00000553529 SMARCA1P28370 1054 aa20.99■□□□□ 0.95
SHMT2-206ENST00000553529 GNAQP50148 359 aa20.99■□□□□ 0.95
SHMT2-206ENST00000553529 MFSD10Q14728 455 aa20.99■□□□□ 0.95
SHMT2-206ENST00000553529 GPNMBQ14956 572 aa20.99■□□□□ 0.95
SHMT2-206ENST00000553529 TCTN1Q2MV58 587 aa20.99■□□□□ 0.95
SHMT2-206ENST00000553529 GPR153Q6NV75 609 aa20.99■□□□□ 0.95
SHMT2-206ENST00000553529 NFRKBQ6P4R8 1299 aa20.99■□□□□ 0.95
SHMT2-206ENST00000553529 PPTC7Q8NI37 304 aa20.99■□□□□ 0.95
SHMT2-206ENST00000553529 EMID1Q96A84 441 aaPredicted RBP20.99■□□□□ 0.95
SHMT2-206ENST00000553529 INPP4AQ96PE3 977 aaPredicted RBP20.99■□□□□ 0.95
SHMT2-206ENST00000553529 V9GY48 417 aaPredicted RBP20.99■□□□□ 0.95
SHMT2-206ENST00000553529 TRIP12Q14669 1992 aaPredicted RBP20.98■□□□□ 0.95
SHMT2-206ENST00000553529 PIK3CDO00329 1044 aa20.98■□□□□ 0.95
SHMT2-206ENST00000553529 ATP9AO75110 1047 aa20.98■□□□□ 0.95
SHMT2-206ENST00000553529 RABGGTBP53611 331 aa20.98■□□□□ 0.95
SHMT2-206ENST00000553529 LAMC2Q13753 1193 aa20.98■□□□□ 0.95
SHMT2-206ENST00000553529 PTGISQ16647 500 aa20.98■□□□□ 0.95
SHMT2-206ENST00000553529 DGKDQ16760 1214 aa20.98■□□□□ 0.95
SHMT2-206ENST00000553529 KIAA0753Q2KHM9 967 aa20.98■□□□□ 0.95
SHMT2-206ENST00000553529 BRDTQ58F21 947 aaPredicted RBP20.98■□□□□ 0.95
SHMT2-206ENST00000553529 ZNF697Q5TEC3 545 aa20.98■□□□□ 0.95
SHMT2-206ENST00000553529 CYFIP1Q7L576 1253 aa20.98■□□□□ 0.95
SHMT2-206ENST00000553529 C16orf70Q9BSU1 422 aa20.98■□□□□ 0.95
SHMT2-206ENST00000553529 SEMA6BQ9H3T3 888 aa20.98■□□□□ 0.95
SHMT2-206ENST00000553529 PSTPIP2Q9H939 334 aa20.98■□□□□ 0.95
SHMT2-206ENST00000553529 EYSQ5T1H1 3165 aa20.97■□□□□ 0.95
SHMT2-206ENST00000553529 SPATA31C2B4DYI2 1134 aa20.97■□□□□ 0.95
SHMT2-206ENST00000553529 STXBP3O00186 592 aa20.97■□□□□ 0.95
SHMT2-206ENST00000553529 HAS3O00219 553 aa20.97■□□□□ 0.95
SHMT2-206ENST00000553529 F2P00734 622 aa20.97■□□□□ 0.95
SHMT2-206ENST00000553529 MYOGP15173 224 aa20.97■□□□□ 0.95
SHMT2-206ENST00000553529 ITGB5P18084 799 aa20.97■□□□□ 0.95
SHMT2-206ENST00000553529 CASTP20810 708 aaKnown RBP20.97■□□□□ 0.95
SHMT2-206ENST00000553529 SMAD3P84022 425 aaKnown RBP20.97■□□□□ 0.95
SHMT2-206ENST00000553529 MYLIPQ8WY64 445 aa20.97■□□□□ 0.95
SHMT2-206ENST00000553529 UIMC1Q96RL1 719 aa20.97■□□□□ 0.95
SHMT2-206ENST00000553529 CDX2Q99626 313 aaPredicted RBP20.97■□□□□ 0.95
SHMT2-206ENST00000553529 PBX4Q9BYU1 374 aa20.97■□□□□ 0.95
SHMT2-206ENST00000553529 PTPRSQ13332 1948 aa20.96■□□□□ 0.95
SHMT2-206ENST00000553529 KPNA6O60684 536 aa20.96■□□□□ 0.95
SHMT2-206ENST00000553529 HOXD8P13378 290 aaPredicted RBP20.96■□□□□ 0.95
SHMT2-206ENST00000553529 RPS6KB1P23443 525 aa20.96■□□□□ 0.95
SHMT2-206ENST00000553529 DNAJB2P25686 324 aa20.96■□□□□ 0.95
SHMT2-206ENST00000553529 PCNX4Q63HM2 1172 aa20.96■□□□□ 0.95
SHMT2-206ENST00000553529 SYNE3Q6ZMZ3 975 aa20.96■□□□□ 0.95
SHMT2-206ENST00000553529 SAMD3Q8N6K7 520 aa20.96■□□□□ 0.95
SHMT2-206ENST00000553529 CYP2W1Q8TAV3 490 aa20.96■□□□□ 0.95
SHMT2-206ENST00000553529 CUL5Q93034 780 aa20.96■□□□□ 0.95
SHMT2-206ENST00000553529 OSBPL7Q9BZF2 842 aa20.96■□□□□ 0.95
SHMT2-206ENST00000553529 MLXIPQ9HAP2 919 aa20.96■□□□□ 0.95
SHMT2-206ENST00000553529 NCOA5Q9HCD5 579 aaKnown RBP20.96■□□□□ 0.95
SHMT2-206ENST00000553529 GTF2IRD1Q9UHL9 959 aa20.96■□□□□ 0.95
SHMT2-206ENST00000553529 PCDHA6Q9UN73 950 aa20.96■□□□□ 0.95
SHMT2-206ENST00000553529 YBX2Q9Y2T7 364 aaKnown RBP20.96■□□□□ 0.95
SHMT2-206ENST00000553529 PCDHA8Q9Y5H6 950 aa20.96■□□□□ 0.95
SHMT2-206ENST00000553529 TET1Q8NFU7 2136 aa20.96■□□□□ 0.95
SHMT2-206ENST00000553529 FGBP02675 491 aa20.95■□□□□ 0.94
SHMT2-206ENST00000553529 LGALS2P05162 132 aa20.95■□□□□ 0.94
SHMT2-206ENST00000553529 IQCF3P0C7M6 154 aa20.95■□□□□ 0.94
SHMT2-206ENST00000553529 NAPAP54920 295 aa20.95■□□□□ 0.94
SHMT2-206ENST00000553529 KRT32Q14532 448 aa20.95■□□□□ 0.94
SHMT2-206ENST00000553529 PSRC1Q6PGN9 363 aaPredicted RBP20.95■□□□□ 0.94
SHMT2-206ENST00000553529 BLOC1S2Q6QNY1 142 aa20.95■□□□□ 0.94
SHMT2-206ENST00000553529 TMCO2Q7Z6W1 182 aaPredicted RBP20.95■□□□□ 0.94
SHMT2-206ENST00000553529 HERVK_113Q902F9 699 aa20.95■□□□□ 0.94
SHMT2-206ENST00000553529 PHKBQ93100 1093 aa20.95■□□□□ 0.94
SHMT2-206ENST00000553529 ICAM3P32942 547 aa20.94■□□□□ 0.94
SHMT2-206ENST00000553529 METAP2P50579 478 aaKnown RBP eCLIP20.94■□□□□ 0.942e-6■■■■□ 21
SHMT2-206ENST00000553529 CCT2P78371 535 aaKnown RBP20.94■□□□□ 0.94
SHMT2-206ENST00000553529 FGD1P98174 961 aa20.94■□□□□ 0.94
SHMT2-206ENST00000553529 TRAF1Q13077 416 aa20.94■□□□□ 0.94
SHMT2-206ENST00000553529 TOB2Q14106 344 aaPredicted RBP20.94■□□□□ 0.94
SHMT2-206ENST00000553529 GRIN2CQ14957 1233 aa20.94■□□□□ 0.94
SHMT2-206ENST00000553529 UTP14CQ5TAP6 766 aaKnown RBP20.94■□□□□ 0.94
SHMT2-206ENST00000553529 GPR20Q99678 358 aa20.94■□□□□ 0.94
SHMT2-206ENST00000553529 UPF3BQ9BZI7 483 aaKnown RBP20.94■□□□□ 0.94
SHMT2-206ENST00000553529 RBM28Q9NW13 759 aaKnown RBP20.94■□□□□ 0.94
SHMT2-206ENST00000553529 PPP4R2Q9NY27 417 aa20.94■□□□□ 0.94
SHMT2-206ENST00000553529 NOD1Q9Y239 953 aa20.94■□□□□ 0.94
SHMT2-206ENST00000553529 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.93■□□□□ 0.94
SHMT2-206ENST00000553529 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.93■□□□□ 0.94
SHMT2-206ENST00000553529 ZBBXA8MT70 800 aa20.93■□□□□ 0.94
SHMT2-206ENST00000553529 FIBPO43427 364 aa20.93■□□□□ 0.94
SHMT2-206ENST00000553529 SUPT20HL2P0C7V6 817 aa20.93■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms