RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 C1orf112Q9NSG2 853 aa7.32□□□□□ -1.24
SCFD1-208ENST00000553278 GTF2IRD1Q9UHL9 959 aa7.32□□□□□ -1.24
SCFD1-208ENST00000553278 SAP30BPQ9UHR5 308 aaKnown RBP7.32□□□□□ -1.24
SCFD1-208ENST00000553278 CNTNAP4Q9C0A0 1308 aa7.31□□□□□ -1.24
SCFD1-208ENST00000553278 SHISA3A0PJX4 238 aa7.31□□□□□ -1.24
SCFD1-208ENST00000553278 KRT37O76014 449 aa7.31□□□□□ -1.24
SCFD1-208ENST00000553278 YBX3P16989 372 aaKnown RBP eCLIP7.31□□□□□ -1.24
SCFD1-208ENST00000553278 HOXB4P17483 251 aaPredicted RBP7.31□□□□□ -1.24
SCFD1-208ENST00000553278 TPP2P29144 1249 aaPredicted RBP7.31□□□□□ -1.24
SCFD1-208ENST00000553278 HTR3AP46098 478 aa7.31□□□□□ -1.24
SCFD1-208ENST00000553278 PHC1P78364 1004 aa7.31□□□□□ -1.24
SCFD1-208ENST00000553278 LACTBP83111 547 aaPredicted RBP7.31□□□□□ -1.24
SCFD1-208ENST00000553278 LSAMPQ13449 338 aa7.31□□□□□ -1.24
SCFD1-208ENST00000553278 ACAP2Q15057 778 aa7.31□□□□□ -1.24
SCFD1-208ENST00000553278 TERF2Q15554 542 aa7.31□□□□□ -1.24
SCFD1-208ENST00000553278 SGO2Q562F6 1265 aa7.31□□□□□ -1.24
SCFD1-208ENST00000553278 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.31□□□□□ -1.24
SCFD1-208ENST00000553278 C22orf34Q6ZV56 151 aa7.31□□□□□ -1.24
SCFD1-208ENST00000553278 STRBPQ96SI9 672 aaKnown RBP7.31□□□□□ -1.24
SCFD1-208ENST00000553278 ELAC2Q9BQ52 826 aaKnown RBP7.31□□□□□ -1.24
SCFD1-208ENST00000553278 CBLCQ9ULV8 474 aa7.31□□□□□ -1.24
SCFD1-208ENST00000553278 FAM50BQ9Y247 325 aa7.31□□□□□ -1.24
SCFD1-208ENST00000553278 DAAM1Q9Y4D1 1078 aa7.31□□□□□ -1.24
SCFD1-208ENST00000553278 SPO11Q9Y5K1 396 aa7.31□□□□□ -1.24
SCFD1-208ENST00000553278 ERBB4Q15303 1308 aa7.3□□□□□ -1.24
SCFD1-208ENST00000553278 FAM95CA0A1B0GW59 222 aa7.3□□□□□ -1.24
SCFD1-208ENST00000553278 SLC12A8A0AV02 714 aa7.3□□□□□ -1.24
SCFD1-208ENST00000553278 FAM229AH3BQW9 127 aa7.3□□□□□ -1.24
SCFD1-208ENST00000553278 PCDHGA12O60330 932 aa7.3□□□□□ -1.24
SCFD1-208ENST00000553278 ALX3O95076 343 aa7.3□□□□□ -1.24
SCFD1-208ENST00000553278 ZNF205O95201 554 aa7.3□□□□□ -1.24
SCFD1-208ENST00000553278 LORP23490 312 aaPredicted RBP7.3□□□□□ -1.24
SCFD1-208ENST00000553278 AKAP5P24588 427 aa7.3□□□□□ -1.24
SCFD1-208ENST00000553278 GTF2A2P52657 109 aa7.3□□□□□ -1.24
SCFD1-208ENST00000553278 IFIT1BQ5T764 474 aaKnown RBP7.3□□□□□ -1.24
SCFD1-208ENST00000553278 MORC1Q86VD1 984 aa7.3□□□□□ -1.24
SCFD1-208ENST00000553278 TICAM2Q86XR7 235 aa7.3□□□□□ -1.24
SCFD1-208ENST00000553278 NEDD1Q8NHV4 660 aa7.3□□□□□ -1.24
SCFD1-208ENST00000553278 IRF7Q92985 503 aa7.3□□□□□ -1.24
SCFD1-208ENST00000553278 FAM46AQ96IP4 442 aaKnown RBP7.3□□□□□ -1.24
SCFD1-208ENST00000553278 GPR62Q9BZJ7 368 aa7.3□□□□□ -1.24
SCFD1-208ENST00000553278 PCIF1Q9H4Z3 704 aa7.3□□□□□ -1.24
SCFD1-208ENST00000553278 C1GALT1Q9NS00 363 aa7.3□□□□□ -1.24
SCFD1-208ENST00000553278 DDX20Q9UHI6 824 aaKnown RBP7.3□□□□□ -1.24
SCFD1-208ENST00000553278 PUF60Q9UHX1 559 aaKnown RBP7.3□□□□□ -1.24
SCFD1-208ENST00000553278 PCDHGA9Q9Y5G4 932 aaKnown RBP7.3□□□□□ -1.24
SCFD1-208ENST00000553278 PCDHGA8Q9Y5G5 932 aa7.3□□□□□ -1.24
SCFD1-208ENST00000553278 PCDHGA7Q9Y5G6 932 aa7.3□□□□□ -1.24
SCFD1-208ENST00000553278 PCDHGA6Q9Y5G7 932 aa7.3□□□□□ -1.24
SCFD1-208ENST00000553278 PCDHGA3Q9Y5H0 932 aa7.3□□□□□ -1.24
SCFD1-208ENST00000553278 PCDHGA2Q9Y5H1 932 aa7.3□□□□□ -1.24
SCFD1-208ENST00000553278 TIMM13Q9Y5L4 95 aaPredicted RBP7.3□□□□□ -1.24
SCFD1-208ENST00000553278 SSU72P8A0A1W2PR75 194 aa7.29□□□□□ -1.24
SCFD1-208ENST00000553278 RASSF10A6NK89 507 aa7.29□□□□□ -1.24
SCFD1-208ENST00000553278 APAF1O14727 1248 aa7.29□□□□□ -1.24
SCFD1-208ENST00000553278 NRDCO43847 1150 aa7.29□□□□□ -1.24
SCFD1-208ENST00000553278 LEFTY1O75610 366 aa7.29□□□□□ -1.24
SCFD1-208ENST00000553278 WDHD1O75717 1129 aaPredicted RBP7.29□□□□□ -1.24
SCFD1-208ENST00000553278 ENDOUP21128 410 aaKnown RBP7.29□□□□□ -1.24
SCFD1-208ENST00000553278 PCBP3P57721 371 aaKnown RBP7.29□□□□□ -1.24
SCFD1-208ENST00000553278 RPL11P62913 178 aaKnown RBP7.29□□□□□ -1.24
SCFD1-208ENST00000553278 HTRA3P83110 453 aa7.29□□□□□ -1.24
SCFD1-208ENST00000553278 TNK2Q07912 1038 aa7.29□□□□□ -1.24
SCFD1-208ENST00000553278 RAPGEF1Q13905 1077 aa7.29□□□□□ -1.24
SCFD1-208ENST00000553278 INF2Q27J81 1249 aa7.29□□□□□ -1.24
SCFD1-208ENST00000553278 UVSSAQ2YD98 709 aa7.29□□□□□ -1.24
SCFD1-208ENST00000553278 RRP12Q5JTH9 1297 aaKnown RBP7.29□□□□□ -1.24
SCFD1-208ENST00000553278 PAOXQ6QHF9 649 aa7.29□□□□□ -1.24
SCFD1-208ENST00000553278 LYPD4Q6UWN0 246 aa7.29□□□□□ -1.24
SCFD1-208ENST00000553278 Q6ZS46 218 aa7.29□□□□□ -1.24
SCFD1-208ENST00000553278 MFSD4AQ8N468 514 aa7.29□□□□□ -1.24
SCFD1-208ENST00000553278 KIAA1958Q8N8K9 716 aa7.29□□□□□ -1.24
SCFD1-208ENST00000553278 ENAHQ8N8S7 591 aaPredicted RBP7.29□□□□□ -1.24
SCFD1-208ENST00000553278 ZNF610Q8N9Z0 462 aa7.29□□□□□ -1.24
SCFD1-208ENST00000553278 LMBR1Q8WVP7 490 aa7.29□□□□□ -1.24
SCFD1-208ENST00000553278 RUNDC1Q96C34 613 aa7.29□□□□□ -1.24
SCFD1-208ENST00000553278 KCNJ15Q99712 375 aa7.29□□□□□ -1.24
SCFD1-208ENST00000553278 MAF1Q9H063 256 aa7.29□□□□□ -1.24
SCFD1-208ENST00000553278 TRIT1Q9H3H1 467 aaKnown RBP7.29□□□□□ -1.24
SCFD1-208ENST00000553278 PPCSQ9HAB8 311 aa7.29□□□□□ -1.24
SCFD1-208ENST00000553278 DDX21Q9NR30 783 aaKnown RBP eCLIP7.29□□□□□ -1.24
SCFD1-208ENST00000553278 TOPORSQ9NS56 1045 aaPredicted RBP7.29□□□□□ -1.24
SCFD1-208ENST00000553278 TOMM22Q9NS69 142 aa7.29□□□□□ -1.24
SCFD1-208ENST00000553278 GNL3LQ9NVN8 582 aaKnown RBP7.29□□□□□ -1.24
SCFD1-208ENST00000553278 PPARGC1AQ9UBK2 798 aaKnown RBP7.29□□□□□ -1.24
SCFD1-208ENST00000553278 USP21Q9UK80 565 aa7.29□□□□□ -1.24
SCFD1-208ENST00000553278 GNB5O14775 395 aa7.28□□□□□ -1.24
SCFD1-208ENST00000553278 CTNND1O60716 968 aaKnown RBP7.28□□□□□ -1.24
SCFD1-208ENST00000553278 H2AFYO75367 372 aaKnown RBP7.28□□□□□ -1.24
SCFD1-208ENST00000553278 OFD1O75665 1012 aa7.28□□□□□ -1.24
SCFD1-208ENST00000553278 SYPP08247 313 aa7.28□□□□□ -1.24
SCFD1-208ENST00000553278 FAM87AP0C7U9 286 aa7.28□□□□□ -1.24
SCFD1-208ENST00000553278 ZNF865P0CJ78 1059 aaPredicted RBP7.28□□□□□ -1.24
SCFD1-208ENST00000553278 BMP3P12645 472 aa7.28□□□□□ -1.24
SCFD1-208ENST00000553278 PDE6AP16499 860 aa7.28□□□□□ -1.24
SCFD1-208ENST00000553278 SLC9A1P19634 815 aa7.28□□□□□ -1.24
SCFD1-208ENST00000553278 MAP4P27816 1152 aaKnown RBP7.28□□□□□ -1.24
SCFD1-208ENST00000553278 GPR3P46089 330 aa7.28□□□□□ -1.24
SCFD1-208ENST00000553278 SMAD3P84022 425 aaKnown RBP7.28□□□□□ -1.24
SCFD1-208ENST00000553278 IRF9Q00978 393 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms