RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 YME1L1Q96TA2 773 aa15.2■□□□□ 0.02
VPS29-211ENST00000553128 UPF3BQ9BZI7 483 aaKnown RBP15.2■□□□□ 0.02
VPS29-211ENST00000553128 DDX41Q9UJV9 622 aaKnown RBP15.2■□□□□ 0.02
VPS29-211ENST00000553128 WDR19Q8NEZ3 1342 aa15.19■□□□□ 0.02
VPS29-211ENST00000553128 RSPH10B2B2RC85 870 aa15.19■□□□□ 0.02
VPS29-211ENST00000553128 LINC01565O15544 149 aa15.19■□□□□ 0.02
VPS29-211ENST00000553128 ST18O60284 1047 aa15.19■□□□□ 0.02
VPS29-211ENST00000553128 SORBS3O60504 671 aa15.19■□□□□ 0.02
VPS29-211ENST00000553128 TBX10O75333 385 aa15.19■□□□□ 0.02
VPS29-211ENST00000553128 CSPG5O95196 566 aa15.19■□□□□ 0.02
VPS29-211ENST00000553128 RSPH10BP0C881 870 aa15.19■□□□□ 0.02
VPS29-211ENST00000553128 TOP1P11387 765 aaKnown RBP15.19■□□□□ 0.02
VPS29-211ENST00000553128 SYTL5Q8TDW5 730 aaPredicted RBP15.19■□□□□ 0.02
VPS29-211ENST00000553128 EDAQ92838 391 aa15.19■□□□□ 0.02
VPS29-211ENST00000553128 ALG13Q9NP73 1137 aaKnown RBP15.19■□□□□ 0.02
VPS29-211ENST00000553128 FAM86C1Q9NVL1 165 aa15.19■□□□□ 0.02
VPS29-211ENST00000553128 GRM6O15303 877 aa15.18■□□□□ 0.02
VPS29-211ENST00000553128 ORC4O43929 436 aa15.18■□□□□ 0.02
VPS29-211ENST00000553128 LINC00271P0C7V0 271 aa15.18■□□□□ 0.02
VPS29-211ENST00000553128 GOLGA8HP0CJ92 632 aa15.18■□□□□ 0.02
VPS29-211ENST00000553128 ZNF543Q08ER8 600 aa15.18■□□□□ 0.02
VPS29-211ENST00000553128 KATNAL1Q9BW62 490 aa15.18■□□□□ 0.02
VPS29-211ENST00000553128 ANAPC4Q9UJX5 808 aa15.18■□□□□ 0.02
VPS29-211ENST00000553128 EMSYQ7Z589 1322 aa15.17■□□□□ 0.02
VPS29-211ENST00000553128 NLRC5Q86WI3 1866 aa15.17■□□□□ 0.02
VPS29-211ENST00000553128 COL4A6Q14031 1691 aa15.17■□□□□ 0.02
VPS29-211ENST00000553128 TMEM221A6NGB7 291 aa15.17■□□□□ 0.02
VPS29-211ENST00000553128 B4DLN1 442 aa15.17■□□□□ 0.02
VPS29-211ENST00000553128 M0R296 226 aa15.17■□□□□ 0.02
VPS29-211ENST00000553128 FGRP09769 529 aa15.17■□□□□ 0.02
VPS29-211ENST00000553128 MRPL12P52815 198 aaKnown RBP15.17■□□□□ 0.02
VPS29-211ENST00000553128 PTPN5P54829 565 aa15.17■□□□□ 0.02
VPS29-211ENST00000553128 HNRNPUQ00839 825 aaKnown RBP eCLIP15.17■□□□□ 0.02
VPS29-211ENST00000553128 STXBP2Q15833 593 aa15.17■□□□□ 0.02
VPS29-211ENST00000553128 RRP12Q5JTH9 1297 aaKnown RBP15.17■□□□□ 0.02
VPS29-211ENST00000553128 SERINC5Q86VE9 423 aa15.17■□□□□ 0.02
VPS29-211ENST00000553128 DHX37Q8IY37 1157 aaKnown RBP15.17■□□□□ 0.02
VPS29-211ENST00000553128 RGS22Q8NE09 1264 aa15.17■□□□□ 0.02
VPS29-211ENST00000553128 PPTC7Q8NI37 304 aa15.17■□□□□ 0.02
VPS29-211ENST00000553128 OTUD7AQ8TE49 926 aaPredicted RBP15.17■□□□□ 0.02
VPS29-211ENST00000553128 EMID1Q96A84 441 aaPredicted RBP15.17■□□□□ 0.02
VPS29-211ENST00000553128 PBXIP1Q96AQ6 731 aa15.17■□□□□ 0.02
VPS29-211ENST00000553128 UBA5Q9GZZ9 404 aa15.17■□□□□ 0.02
VPS29-211ENST00000553128 IGFLR1Q9H665 355 aa15.17■□□□□ 0.02
VPS29-211ENST00000553128 STXBP3O00186 592 aa15.16■□□□□ 0.02
VPS29-211ENST00000553128 CTSHP09668 335 aa15.16■□□□□ 0.02
VPS29-211ENST00000553128 SNHG28P0DPA3 235 aa15.16■□□□□ 0.02
VPS29-211ENST00000553128 HOXD8P13378 290 aaPredicted RBP15.16■□□□□ 0.02
VPS29-211ENST00000553128 EIF2AK2P19525 551 aaKnown RBP15.16■□□□□ 0.02
VPS29-211ENST00000553128 CTNNB1P35222 781 aa15.16■□□□□ 0.02
VPS29-211ENST00000553128 SMAD4Q13485 552 aaKnown RBP15.16■□□□□ 0.02
VPS29-211ENST00000553128 HSDL1Q3SXM5 330 aa15.16■□□□□ 0.02
VPS29-211ENST00000553128 TRIM67Q6ZTA4 783 aa15.16■□□□□ 0.02
VPS29-211ENST00000553128 BMP8AQ7Z5Y6 402 aa15.16■□□□□ 0.02
VPS29-211ENST00000553128 PI4K2BQ8TCG2 481 aa15.16■□□□□ 0.02
VPS29-211ENST00000553128 NSUN6Q8TEA1 469 aaKnown RBP15.16■□□□□ 0.02
VPS29-211ENST00000553128 GPATCH3Q96I76 525 aa15.16■□□□□ 0.02
VPS29-211ENST00000553128 RMDN3Q96TC7 470 aa15.16■□□□□ 0.02
VPS29-211ENST00000553128 FSD1Q9BTV5 496 aa15.16■□□□□ 0.02
VPS29-211ENST00000553128 IFIH1Q9BYX4 1025 aaKnown RBP15.16■□□□□ 0.02
VPS29-211ENST00000553128 TOMM22Q9NS69 142 aa15.16■□□□□ 0.02
VPS29-211ENST00000553128 MRVI1Q9Y6F6 885 aa15.16■□□□□ 0.02
VPS29-211ENST00000553128 DCHS1Q96JQ0 3298 aa15.16■□□□□ 0.02
VPS29-211ENST00000553128 KIAA1217Q5T5P2 1943 aa15.15■□□□□ 0.02
VPS29-211ENST00000553128 RGS20O76081 388 aa15.15■□□□□ 0.02
VPS29-211ENST00000553128 MS4A1P11836 297 aa15.15■□□□□ 0.02
VPS29-211ENST00000553128 LAMC2Q13753 1193 aa15.15■□□□□ 0.02
VPS29-211ENST00000553128 SEPT8Q92599 483 aa15.15■□□□□ 0.02
VPS29-211ENST00000553128 POP1Q99575 1024 aaKnown RBP15.15■□□□□ 0.02
VPS29-211ENST00000553128 TCP11L1Q9NUJ3 509 aa15.15■□□□□ 0.02
VPS29-211ENST00000553128 PNMA2Q9UL42 364 aa15.15■□□□□ 0.02
VPS29-211ENST00000553128 ZFHX2Q9C0A1 2572 aaPredicted RBP15.15■□□□□ 0.02
VPS29-211ENST00000553128 C5orf67F2Z3F1 127 aa15.14■□□□□ 0.01
VPS29-211ENST00000553128 TREHO43280 583 aa15.14■□□□□ 0.01
VPS29-211ENST00000553128 GFRA3O60609 400 aa15.14■□□□□ 0.01
VPS29-211ENST00000553128 CAMK1Q14012 370 aa15.14■□□□□ 0.01
VPS29-211ENST00000553128 CDC37Q16543 378 aaPredicted RBP15.14■□□□□ 0.01
VPS29-211ENST00000553128 C20orf194Q5TEA3 1177 aa15.14■□□□□ 0.01
VPS29-211ENST00000553128 MYSM1Q5VVJ2 828 aa15.14■□□□□ 0.01
VPS29-211ENST00000553128 ATP6V0A1Q93050 837 aa15.14■□□□□ 0.01
VPS29-211ENST00000553128 IWS1Q96ST2 819 aa15.14■□□□□ 0.01
VPS29-211ENST00000553128 C16orf70Q9BSU1 422 aa15.14■□□□□ 0.01
VPS29-211ENST00000553128 BCAS3Q9H6U6 928 aa15.14■□□□□ 0.01
VPS29-211ENST00000553128 CD207Q9UJ71 328 aa15.14■□□□□ 0.01
VPS29-211ENST00000553128 VPS13AQ96RL7 3174 aa15.14■□□□□ 0.01
VPS29-211ENST00000553128 C17orf102A2RUQ5 167 aa15.13■□□□□ 0.01
VPS29-211ENST00000553128 NCK2O43639 380 aa15.13■□□□□ 0.01
VPS29-211ENST00000553128 EIF3JO75822 258 aaKnown RBP15.13■□□□□ 0.01
VPS29-211ENST00000553128 NR3C2P08235 984 aa15.13■□□□□ 0.01
VPS29-211ENST00000553128 HOXC8P31273 242 aa15.13■□□□□ 0.01
VPS29-211ENST00000553128 BMPR1AP36894 532 aa15.13■□□□□ 0.01
VPS29-211ENST00000553128 VCPP55072 806 aaKnown RBP15.13■□□□□ 0.01
VPS29-211ENST00000553128 ZXDAP98168 799 aa15.13■□□□□ 0.01
VPS29-211ENST00000553128 SP2Q02086 613 aa15.13■□□□□ 0.01
VPS29-211ENST00000553128 RALGAPA2Q2PPJ7 1873 aa15.13■□□□□ 0.01
VPS29-211ENST00000553128 ARHGEF16Q5VV41 709 aa15.13■□□□□ 0.01
VPS29-211ENST00000553128 KMT2EQ8IZD2 1858 aa15.13■□□□□ 0.01
VPS29-211ENST00000553128 FIBCD1Q8N539 461 aa15.13■□□□□ 0.01
VPS29-211ENST00000553128 GPKOWQ92917 476 aaPredicted RBP eCLIP15.13■□□□□ 0.01
VPS29-211ENST00000553128 IL17RAQ96F46 866 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms