RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 NUDT12Q9BQG2 462 aa8.59□□□□□ -1.03
LIMA1-216ENST00000552909 BPIFA3Q9BQP9 254 aa8.59□□□□□ -1.03
LIMA1-216ENST00000552909 AGXT2Q9BYV1 514 aa8.59□□□□□ -1.03
LIMA1-216ENST00000552909 GOLPH3LQ9H4A5 285 aa8.59□□□□□ -1.03
LIMA1-216ENST00000552909 BIN2Q9UBW5 565 aaPredicted RBP8.59□□□□□ -1.03
LIMA1-216ENST00000552909 PRR12Q9ULL5 1215 aa8.59□□□□□ -1.03
LIMA1-216ENST00000552909 RANBP2P49792 3224 aaKnown RBP8.59□□□□□ -1.03
LIMA1-216ENST00000552909 ZNF536O15090 1300 aa8.59□□□□□ -1.03
LIMA1-216ENST00000552909 BAZ2BQ9UIF8 2168 aaKnown RBP8.59□□□□□ -1.03
LIMA1-216ENST00000552909 GOLGA6L9A6NEM1 432 aa8.59□□□□□ -1.03
LIMA1-216ENST00000552909 IFIT3O14879 490 aaKnown RBP8.59□□□□□ -1.03
LIMA1-216ENST00000552909 PDIA3P30101 505 aaKnown RBP8.59□□□□□ -1.03
LIMA1-216ENST00000552909 CEBPZQ03701 1054 aaKnown RBP8.59□□□□□ -1.03
LIMA1-216ENST00000552909 GRB14Q14449 540 aa8.59□□□□□ -1.03
LIMA1-216ENST00000552909 MCM6Q14566 821 aa8.59□□□□□ -1.03
LIMA1-216ENST00000552909 SNRNP48Q6IEG0 339 aaKnown RBP8.59□□□□□ -1.03
LIMA1-216ENST00000552909 TADA2BQ86TJ2 420 aa8.59□□□□□ -1.03
LIMA1-216ENST00000552909 FBXL16Q8N461 479 aa8.59□□□□□ -1.03
LIMA1-216ENST00000552909 ANKRD20A12PQ8NF67 263 aa8.59□□□□□ -1.03
LIMA1-216ENST00000552909 NPLOC4Q8TAT6 608 aa8.59□□□□□ -1.03
LIMA1-216ENST00000552909 IGDCC4Q8TDY8 1250 aa8.59□□□□□ -1.03
LIMA1-216ENST00000552909 PXYLP1Q8TE99 480 aa8.59□□□□□ -1.03
LIMA1-216ENST00000552909 CHURC1Q8WUH1 139 aa8.59□□□□□ -1.03
LIMA1-216ENST00000552909 DCAF4Q8WV16 495 aa8.59□□□□□ -1.03
LIMA1-216ENST00000552909 HNRNPLLQ8WVV9 542 aaKnown RBP8.59□□□□□ -1.03
LIMA1-216ENST00000552909 AGBL1Q96MI9 1066 aa8.59□□□□□ -1.03
LIMA1-216ENST00000552909 UBAC1Q9BSL1 405 aa8.59□□□□□ -1.03
LIMA1-216ENST00000552909 UBA5Q9GZZ9 404 aa8.59□□□□□ -1.03
LIMA1-216ENST00000552909 FAM107BQ9H098 131 aa8.59□□□□□ -1.03
LIMA1-216ENST00000552909 FLRT1Q9NZU1 646 aa8.59□□□□□ -1.03
LIMA1-216ENST00000552909 A0A087WUV0 522 aaPredicted RBP8.58□□□□□ -1.04
LIMA1-216ENST00000552909 POTEB2H3BUK9 544 aa8.58□□□□□ -1.04
LIMA1-216ENST00000552909 COBLO75128 1261 aa8.58□□□□□ -1.04
LIMA1-216ENST00000552909 ERLIN1O75477 346 aa8.58□□□□□ -1.04
LIMA1-216ENST00000552909 INHAP05111 366 aa8.58□□□□□ -1.04
LIMA1-216ENST00000552909 ADORA2AP29274 412 aa8.58□□□□□ -1.04
LIMA1-216ENST00000552909 GNG11P61952 73 aa8.58□□□□□ -1.04
LIMA1-216ENST00000552909 CCT2P78371 535 aaKnown RBP8.58□□□□□ -1.04
LIMA1-216ENST00000552909 ZNF543Q08ER8 600 aa8.58□□□□□ -1.04
LIMA1-216ENST00000552909 MAP2K5Q13163 448 aa8.58□□□□□ -1.04
LIMA1-216ENST00000552909 HSP90B2PQ58FF3 399 aa8.58□□□□□ -1.04
LIMA1-216ENST00000552909 TMEM67Q5HYA8 995 aa8.58□□□□□ -1.04
LIMA1-216ENST00000552909 IFIT1BQ5T764 474 aaKnown RBP8.58□□□□□ -1.04
LIMA1-216ENST00000552909 RIOX2Q8IUF8 465 aa8.58□□□□□ -1.04
LIMA1-216ENST00000552909 FAM177A1Q8N128 213 aaPredicted RBP8.58□□□□□ -1.04
LIMA1-216ENST00000552909 SLAIN1Q8ND83 568 aa8.58□□□□□ -1.04
LIMA1-216ENST00000552909 ZNF274Q96GC6 653 aaPredicted RBP8.58□□□□□ -1.04
LIMA1-216ENST00000552909 TEX13BQ9BXU2 312 aa8.58□□□□□ -1.04
LIMA1-216ENST00000552909 KAT14Q9H8E8 782 aa8.58□□□□□ -1.04
LIMA1-216ENST00000552909 RCOR1Q9UKL0 485 aa8.58□□□□□ -1.04
LIMA1-216ENST00000552909 FAN1Q9Y2M0 1017 aa8.58□□□□□ -1.04
LIMA1-216ENST00000552909 IVNS1ABPQ9Y6Y0 642 aa8.58□□□□□ -1.04
LIMA1-216ENST00000552909 WDR19Q8NEZ3 1342 aa8.58□□□□□ -1.04
LIMA1-216ENST00000552909 PDE4DIPQ5VU43 2346 aa8.58□□□□□ -1.04
LIMA1-216ENST00000552909 KLF18A0A0U1RQI7 1052 aa8.58□□□□□ -1.04
LIMA1-216ENST00000552909 VWA3AA6NCI4 1184 aa8.58□□□□□ -1.04
LIMA1-216ENST00000552909 SLC15A5A6NIM6 579 aa8.58□□□□□ -1.04
LIMA1-216ENST00000552909 SH2B2O14492 632 aaPredicted RBP8.58□□□□□ -1.04
LIMA1-216ENST00000552909 PLA2G6O60733 806 aa8.58□□□□□ -1.04
LIMA1-216ENST00000552909 ZBED4O75132 1171 aa8.58□□□□□ -1.04
LIMA1-216ENST00000552909 PGK2P07205 417 aa8.58□□□□□ -1.04
LIMA1-216ENST00000552909 EN2P19622 333 aaPredicted RBP8.58□□□□□ -1.04
LIMA1-216ENST00000552909 SCRN1Q12765 414 aa8.58□□□□□ -1.04
LIMA1-216ENST00000552909 CCDC174Q6PII3 467 aa8.58□□□□□ -1.04
LIMA1-216ENST00000552909 LRRC31Q6UY01 552 aa8.58□□□□□ -1.04
LIMA1-216ENST00000552909 NFXL1Q6ZNB6 911 aa8.58□□□□□ -1.04
LIMA1-216ENST00000552909 FAM160B2Q86V87 743 aa8.58□□□□□ -1.04
LIMA1-216ENST00000552909 RAB11FIP4Q86YS3 637 aa8.58□□□□□ -1.04
LIMA1-216ENST00000552909 STAG2Q8N3U4 1231 aa8.58□□□□□ -1.04
LIMA1-216ENST00000552909 FSIP1Q8NA03 581 aa8.58□□□□□ -1.04
LIMA1-216ENST00000552909 SHCBP1Q8NEM2 672 aa8.58□□□□□ -1.04
LIMA1-216ENST00000552909 ENGASEQ8NFI3 743 aa8.58□□□□□ -1.04
LIMA1-216ENST00000552909 SOCS4Q8WXH5 440 aa8.58□□□□□ -1.04
LIMA1-216ENST00000552909 TMEM87BQ96K49 555 aa8.58□□□□□ -1.04
LIMA1-216ENST00000552909 UNC93B1Q9H1C4 597 aa8.58□□□□□ -1.04
LIMA1-216ENST00000552909 MROH8Q9H579 483 aa8.58□□□□□ -1.04
LIMA1-216ENST00000552909 HOMER2Q9NSB8 354 aa8.58□□□□□ -1.04
LIMA1-216ENST00000552909 CCDC196A0A1B0GTZ2 297 aa8.57□□□□□ -1.04
LIMA1-216ENST00000552909 ERICH2A1L162 156 aa8.57□□□□□ -1.04
LIMA1-216ENST00000552909 ANKRD65E5RJM6 399 aa8.57□□□□□ -1.04
LIMA1-216ENST00000552909 ATP2A1O14983 1001 aa8.57□□□□□ -1.04
LIMA1-216ENST00000552909 ARHGAP6O43182 974 aa8.57□□□□□ -1.04
LIMA1-216ENST00000552909 STRNO43815 780 aa8.57□□□□□ -1.04
LIMA1-216ENST00000552909 PFKFB2O60825 505 aa8.57□□□□□ -1.04
LIMA1-216ENST00000552909 PPFIA4O75335 1185 aa8.57□□□□□ -1.04
LIMA1-216ENST00000552909 SLC25A27O95847 323 aa8.57□□□□□ -1.04
LIMA1-216ENST00000552909 XRCC5P13010 732 aaKnown RBP8.57□□□□□ -1.04
LIMA1-216ENST00000552909 RGS2P41220 211 aa8.57□□□□□ -1.04
LIMA1-216ENST00000552909 NT5C2P49902 561 aa8.57□□□□□ -1.04
LIMA1-216ENST00000552909 DPCR1Q3MIW9 517 aa8.57□□□□□ -1.04
LIMA1-216ENST00000552909 CCDC178Q5BJE1 867 aa8.57□□□□□ -1.04
LIMA1-216ENST00000552909 DNAJC21Q5F1R6 531 aaKnown RBP8.57□□□□□ -1.04
LIMA1-216ENST00000552909 BEND6Q5SZJ8 279 aaPredicted RBP8.57□□□□□ -1.04
LIMA1-216ENST00000552909 BTNL9Q6UXG8 535 aa8.57□□□□□ -1.04
LIMA1-216ENST00000552909 EP400NLQ6ZTU2 488 aa8.57□□□□□ -1.04
LIMA1-216ENST00000552909 MICALL1Q8N3F8 863 aa8.57□□□□□ -1.04
LIMA1-216ENST00000552909 FAM71BQ8TC56 605 aa8.57□□□□□ -1.04
LIMA1-216ENST00000552909 DDX11Q96FC9 970 aa8.57□□□□□ -1.04
LIMA1-216ENST00000552909 SDF4Q9BRK5 362 aa8.57□□□□□ -1.04
LIMA1-216ENST00000552909 NCOA5Q9HCD5 579 aaKnown RBP8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms