RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 LSM14BQ9BX40 385 aaKnown RBP6.21□□□□□ -1.42
LIMA1-215ENST00000552823 AMNQ9BXJ7 453 aa6.21□□□□□ -1.42
LIMA1-215ENST00000552823 PACSIN2Q9UNF0 486 aaPredicted RBP6.21□□□□□ -1.42
LIMA1-215ENST00000552823 C4AP0C0L4 1744 aa6.21□□□□□ -1.42
LIMA1-215ENST00000552823 C4BP0C0L5 1744 aa6.21□□□□□ -1.42
LIMA1-215ENST00000552823 SMCHD1A6NHR9 2005 aa6.21□□□□□ -1.42
LIMA1-215ENST00000552823 FAM86B1E9PN63 330 aa6.21□□□□□ -1.42
LIMA1-215ENST00000552823 NDUFA10O95299 355 aa6.21□□□□□ -1.42
LIMA1-215ENST00000552823 FAM86B2P0C5J1 330 aa6.21□□□□□ -1.42
LIMA1-215ENST00000552823 GTF2F1P35269 517 aaKnown RBP eCLIP6.21□□□□□ -1.42
LIMA1-215ENST00000552823 EIF4A3P38919 411 aaKnown RBP6.21□□□□□ -1.42
LIMA1-215ENST00000552823 USP8P40818 1118 aa6.21□□□□□ -1.42
LIMA1-215ENST00000552823 CYP2J2P51589 502 aa6.21□□□□□ -1.42
LIMA1-215ENST00000552823 CHMP4BP1P59074 171 aa6.21□□□□□ -1.42
LIMA1-215ENST00000552823 RASSF7Q02833 373 aa6.21□□□□□ -1.42
LIMA1-215ENST00000552823 COASYQ13057 564 aa6.21□□□□□ -1.42
LIMA1-215ENST00000552823 ZC2HC1CQ53FD0 456 aaPredicted RBP6.21□□□□□ -1.42
LIMA1-215ENST00000552823 GJB7Q6PEY0 223 aa6.21□□□□□ -1.42
LIMA1-215ENST00000552823 SFR1Q86XK3 245 aa6.21□□□□□ -1.42
LIMA1-215ENST00000552823 SIAH1Q8IUQ4 282 aa6.21□□□□□ -1.42
LIMA1-215ENST00000552823 MYOCDQ8IZQ8 938 aa6.21□□□□□ -1.42
LIMA1-215ENST00000552823 ANKS1AQ92625 1134 aa6.21□□□□□ -1.42
LIMA1-215ENST00000552823 RAD54LQ92698 747 aa6.21□□□□□ -1.42
LIMA1-215ENST00000552823 JAKMIP2Q96AA8 810 aa6.21□□□□□ -1.42
LIMA1-215ENST00000552823 AGBL1Q96MI9 1066 aa6.21□□□□□ -1.42
LIMA1-215ENST00000552823 TSG101Q99816 390 aa6.21□□□□□ -1.42
LIMA1-215ENST00000552823 PARD6BQ9BYG5 372 aa6.21□□□□□ -1.42
LIMA1-215ENST00000552823 PCIF1Q9H4Z3 704 aa6.21□□□□□ -1.42
LIMA1-215ENST00000552823 PRR12Q9ULL5 1215 aa6.21□□□□□ -1.42
LIMA1-215ENST00000552823 USP20Q9Y2K6 914 aa6.21□□□□□ -1.42
LIMA1-215ENST00000552823 ANKRD36CQ5JPF3 1778 aa6.2□□□□□ -1.42
LIMA1-215ENST00000552823 LGALS16A8MUM7 142 aa6.2□□□□□ -1.42
LIMA1-215ENST00000552823 MOCS3O95396 460 aa6.2□□□□□ -1.42
LIMA1-215ENST00000552823 NMT1P30419 496 aaKnown RBP6.2□□□□□ -1.42
LIMA1-215ENST00000552823 CASP5P51878 434 aa6.2□□□□□ -1.42
LIMA1-215ENST00000552823 GFPT1Q06210 699 aaPredicted RBP6.2□□□□□ -1.42
LIMA1-215ENST00000552823 ADAM9Q13443 819 aa6.2□□□□□ -1.42
LIMA1-215ENST00000552823 SPA17Q15506 151 aa6.2□□□□□ -1.42
LIMA1-215ENST00000552823 SLC15A2Q16348 729 aa6.2□□□□□ -1.42
LIMA1-215ENST00000552823 GPATCH4Q5T3I0 446 aaKnown RBP6.2□□□□□ -1.42
LIMA1-215ENST00000552823 CC2D2BQ6DHV5 1058 aa6.2□□□□□ -1.42
LIMA1-215ENST00000552823 POTEAQ6S8J7 498 aa6.2□□□□□ -1.42
LIMA1-215ENST00000552823 TMTC1Q8IUR5 882 aa6.2□□□□□ -1.42
LIMA1-215ENST00000552823 MYCT1Q8N699 235 aa6.2□□□□□ -1.42
LIMA1-215ENST00000552823 NOA1Q8NC60 698 aaKnown RBP6.2□□□□□ -1.42
LIMA1-215ENST00000552823 BANK1Q8NDB2 785 aa6.2□□□□□ -1.42
LIMA1-215ENST00000552823 CNKSR1Q969H4 720 aa6.2□□□□□ -1.42
LIMA1-215ENST00000552823 FAM163AQ96GL9 167 aaPredicted RBP6.2□□□□□ -1.42
LIMA1-215ENST00000552823 CCDC43Q96MW1 224 aaKnown RBP6.2□□□□□ -1.42
LIMA1-215ENST00000552823 NDST4Q9H3R1 872 aa6.2□□□□□ -1.42
LIMA1-215ENST00000552823 NHEJ1Q9H9Q4 299 aaPredicted RBP6.2□□□□□ -1.42
LIMA1-215ENST00000552823 RAVER2Q9HCJ3 691 aaKnown RBP6.2□□□□□ -1.42
LIMA1-215ENST00000552823 RIC8AQ9NPQ8 531 aa6.2□□□□□ -1.42
LIMA1-215ENST00000552823 LIMA1Q9UHB6 759 aaKnown RBP6.2□□□□□ -1.42
LIMA1-215ENST00000552823 BTAF1O14981 1849 aa6.2□□□□□ -1.42
LIMA1-215ENST00000552823 LRRC53A6NM62 1247 aa6.2□□□□□ -1.42
LIMA1-215ENST00000552823 EML1O00423 815 aa6.2□□□□□ -1.42
LIMA1-215ENST00000552823 RHOBTB3O94955 611 aa6.2□□□□□ -1.42
LIMA1-215ENST00000552823 ATP1A1P05023 1023 aaKnown RBP6.2□□□□□ -1.42
LIMA1-215ENST00000552823 MYBP10242 640 aa6.2□□□□□ -1.42
LIMA1-215ENST00000552823 EIF2AK2P19525 551 aaKnown RBP6.2□□□□□ -1.42
LIMA1-215ENST00000552823 NOP2P46087 812 aaKnown RBP6.2□□□□□ -1.42
LIMA1-215ENST00000552823 STRIP1Q5VSL9 837 aa6.2□□□□□ -1.42
LIMA1-215ENST00000552823 GALNT17Q6IS24 598 aa6.2□□□□□ -1.42
LIMA1-215ENST00000552823 MTERF4Q7Z6M4 381 aaKnown RBP6.2□□□□□ -1.42
LIMA1-215ENST00000552823 CATSPER3Q86XQ3 398 aa6.2□□□□□ -1.42
LIMA1-215ENST00000552823 TTLL6Q8N841 843 aa6.2□□□□□ -1.42
LIMA1-215ENST00000552823 CCDC102AQ96A19 550 aa6.2□□□□□ -1.42
LIMA1-215ENST00000552823 ZNF341Q9BYN7 854 aa6.2□□□□□ -1.42
LIMA1-215ENST00000552823 ARGLU1Q9NWB6 273 aaPredicted RBP6.2□□□□□ -1.42
LIMA1-215ENST00000552823 ZNF446Q9NWS9 450 aa6.2□□□□□ -1.42
LIMA1-215ENST00000552823 SWAP70Q9UH65 585 aa6.2□□□□□ -1.42
LIMA1-215ENST00000552823 CHORDC1Q9UHD1 332 aaPredicted RBP6.2□□□□□ -1.42
LIMA1-215ENST00000552823 TCEAL9Q9UHQ7 104 aa6.2□□□□□ -1.42
LIMA1-215ENST00000552823 HYOU1Q9Y4L1 999 aa6.2□□□□□ -1.42
LIMA1-215ENST00000552823 CHD4Q14839 1912 aa6.2□□□□□ -1.42
LIMA1-215ENST00000552823 BICDL2A1A5D9 508 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 ONECUT3O60422 494 aaPredicted RBP6.19□□□□□ -1.42
LIMA1-215ENST00000552823 POLD1P28340 1107 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 MAGEA1P43355 309 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 CASP4P49662 377 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 DNM2P50570 870 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 SLC7A5Q01650 507 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 UTP14CQ5TAP6 766 aaKnown RBP6.19□□□□□ -1.42
LIMA1-215ENST00000552823 HHIPL2Q6UWX4 724 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 FAM133AQ8N9E0 248 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 NEK11Q8NG66 645 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 DYDC2Q96IM9 177 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 MTMR9Q96QG7 549 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 NAPGQ99747 312 aaPredicted RBP6.19□□□□□ -1.42
LIMA1-215ENST00000552823 PYM1Q9BRP8 204 aaKnown RBP6.19□□□□□ -1.42
LIMA1-215ENST00000552823 EMILIN3Q9NT22 766 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 ZNF70Q9UC06 446 aaPredicted RBP6.19□□□□□ -1.42
LIMA1-215ENST00000552823 DNM3Q9UQ16 869 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 TNRC6CQ9HCJ0 1690 aaKnown RBP6.19□□□□□ -1.42
LIMA1-215ENST00000552823 ABCB11O95342 1321 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 CTAGE15A4D2H0 777 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 TISP43B9A030 160 aa6.19□□□□□ -1.42
LIMA1-215ENST00000552823 TBCAO75347 108 aaKnown RBP6.19□□□□□ -1.42
LIMA1-215ENST00000552823 TADA3O75528 432 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 133.4 ms