RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 CCDC113Q9H0I3 377 aa3.28□□□□□ -1.88
LIMA1-209ENST00000552008 GBP3Q9H0R5 595 aa3.28□□□□□ -1.88
LIMA1-209ENST00000552008 SNTG2Q9NY99 539 aa3.28□□□□□ -1.88
LIMA1-209ENST00000552008 SUCOQ9UBS9 1254 aaKnown RBP3.28□□□□□ -1.88
LIMA1-209ENST00000552008 LOC105371045A0A1W2PR82 267 aa3.27□□□□□ -1.89
LIMA1-209ENST00000552008 B2RBV5 119 aa3.27□□□□□ -1.89
LIMA1-209ENST00000552008 NOP56O00567 594 aaKnown RBP3.27□□□□□ -1.89
LIMA1-209ENST00000552008 ZNF623O75123 536 aa3.27□□□□□ -1.89
LIMA1-209ENST00000552008 PPM1BO75688 479 aa3.27□□□□□ -1.89
LIMA1-209ENST00000552008 UBOX5O94941 541 aa3.27□□□□□ -1.89
LIMA1-209ENST00000552008 CYP2C8P10632 490 aa3.27□□□□□ -1.89
LIMA1-209ENST00000552008 MCM7P33993 719 aa3.27□□□□□ -1.89
LIMA1-209ENST00000552008 CTSKP43235 329 aa3.27□□□□□ -1.89
LIMA1-209ENST00000552008 PMS1P54277 932 aaKnown RBP3.27□□□□□ -1.89
LIMA1-209ENST00000552008 RTP2Q5QGT7 225 aa3.27□□□□□ -1.89
LIMA1-209ENST00000552008 LRP10Q7Z4F1 713 aa3.27□□□□□ -1.89
LIMA1-209ENST00000552008 TMEM192Q8IY95 271 aa3.27□□□□□ -1.89
LIMA1-209ENST00000552008 ZNF503Q96F45 646 aa3.27□□□□□ -1.89
LIMA1-209ENST00000552008 GORASP1Q9BQQ3 440 aa3.27□□□□□ -1.89
LIMA1-209ENST00000552008 DSCC1Q9BVC3 393 aa3.27□□□□□ -1.89
LIMA1-209ENST00000552008 PIF1Q9H611 641 aa3.27□□□□□ -1.89
LIMA1-209ENST00000552008 RXFP1Q9HBX9 757 aa3.27□□□□□ -1.89
LIMA1-209ENST00000552008 PFDN2Q9UHV9 154 aa3.27□□□□□ -1.89
LIMA1-209ENST00000552008 ZNF214Q9UL59 606 aaPredicted RBP3.27□□□□□ -1.89
LIMA1-209ENST00000552008 PCDHB12Q9Y5F1 795 aa3.27□□□□□ -1.89
LIMA1-209ENST00000552008 KDM2BQ8NHM5 1336 aa3.26□□□□□ -1.89
LIMA1-209ENST00000552008 TLDC2A0PJX2 215 aa3.26□□□□□ -1.89
LIMA1-209ENST00000552008 ANKRD34BA5PLL1 514 aa3.26□□□□□ -1.89
LIMA1-209ENST00000552008 IQCA1LA6NCM1 817 aa3.26□□□□□ -1.89
LIMA1-209ENST00000552008 NARSO43776 548 aaKnown RBP3.26□□□□□ -1.89
LIMA1-209ENST00000552008 SUSD5O60279 629 aa3.26□□□□□ -1.89
LIMA1-209ENST00000552008 ITGA4P13612 1032 aa3.26□□□□□ -1.89
LIMA1-209ENST00000552008 EPHB4P54760 987 aa3.26□□□□□ -1.89
LIMA1-209ENST00000552008 CORO7P57737 925 aa3.26□□□□□ -1.89
LIMA1-209ENST00000552008 SSRP1Q08945 709 aaKnown RBP3.26□□□□□ -1.89
LIMA1-209ENST00000552008 SERINC3Q13530 473 aa3.26□□□□□ -1.89
LIMA1-209ENST00000552008 RASGRF1Q13972 1273 aa3.26□□□□□ -1.89
LIMA1-209ENST00000552008 GIMAP6Q6P9H5 292 aa3.26□□□□□ -1.89
LIMA1-209ENST00000552008 CRTC3Q6UUV7 619 aa3.26□□□□□ -1.89
LIMA1-209ENST00000552008 RNF207Q6ZRF8 634 aa3.26□□□□□ -1.89
LIMA1-209ENST00000552008 CRACR2BQ8N4Y2 399 aaPredicted RBP3.26□□□□□ -1.89
LIMA1-209ENST00000552008 ST13P5Q8NFI4 369 aaPredicted RBP3.26□□□□□ -1.89
LIMA1-209ENST00000552008 MICAL1Q8TDZ2 1067 aa3.26□□□□□ -1.89
LIMA1-209ENST00000552008 FGD4Q96M96 766 aa3.26□□□□□ -1.89
LIMA1-209ENST00000552008 DNAJC7Q99615 494 aa3.26□□□□□ -1.89
LIMA1-209ENST00000552008 C11orf84Q9BUA3 381 aaPredicted RBP3.26□□□□□ -1.89
LIMA1-209ENST00000552008 CSRNP2Q9H175 543 aa3.26□□□□□ -1.89
LIMA1-209ENST00000552008 EPN3Q9H201 632 aa3.26□□□□□ -1.89
LIMA1-209ENST00000552008 JADE2Q9NQC1 790 aa3.26□□□□□ -1.89
LIMA1-209ENST00000552008 FAM221BA6H8Z2 402 aa3.25□□□□□ -1.89
LIMA1-209ENST00000552008 C9orf118A6NHY6 69 aa3.25□□□□□ -1.89
LIMA1-209ENST00000552008 C9IYK1 514 aa3.25□□□□□ -1.89
LIMA1-209ENST00000552008 DDX3XO00571 662 aaKnown RBP eCLIP3.25□□□□□ -1.89
LIMA1-209ENST00000552008 GSTM1P09488 218 aa3.25□□□□□ -1.89
LIMA1-209ENST00000552008 GLI4P10075 376 aa3.25□□□□□ -1.89
LIMA1-209ENST00000552008 CANXP27824 592 aaKnown RBP3.25□□□□□ -1.89
LIMA1-209ENST00000552008 ZNF143P52747 638 aaPredicted RBP3.25□□□□□ -1.89
LIMA1-209ENST00000552008 AUHQ13825 339 aaKnown RBP3.25□□□□□ -1.89
LIMA1-209ENST00000552008 RASA3Q14644 834 aa3.25□□□□□ -1.89
LIMA1-209ENST00000552008 NRN1LQ496H8 165 aa3.25□□□□□ -1.89
LIMA1-209ENST00000552008 TAF7LQ5H9L4 462 aa3.25□□□□□ -1.89
LIMA1-209ENST00000552008 DCAF15Q66K64 600 aa3.25□□□□□ -1.89
LIMA1-209ENST00000552008 CWF19L1Q69YN2 538 aaKnown RBP3.25□□□□□ -1.89
LIMA1-209ENST00000552008 C7orf61Q8IZ16 206 aa3.25□□□□□ -1.89
LIMA1-209ENST00000552008 LRRC47Q8N1G4 583 aaKnown RBP3.25□□□□□ -1.89
LIMA1-209ENST00000552008 Q8TCH9 128 aa3.25□□□□□ -1.89
LIMA1-209ENST00000552008 HAUS7Q99871 368 aa3.25□□□□□ -1.89
LIMA1-209ENST00000552008 GFOD1Q9NXC2 390 aa3.25□□□□□ -1.89
LIMA1-209ENST00000552008 APPP05067 770 aa3.24□□□□□ -1.89
LIMA1-209ENST00000552008 EPHX1P07099 455 aa3.24□□□□□ -1.89
LIMA1-209ENST00000552008 C8BP07358 591 aa3.24□□□□□ -1.89
LIMA1-209ENST00000552008 CD247P20963 164 aa3.24□□□□□ -1.89
LIMA1-209ENST00000552008 PPP2CBP62714 309 aa3.24□□□□□ -1.89
LIMA1-209ENST00000552008 PPP2CAP67775 309 aa3.24□□□□□ -1.89
LIMA1-209ENST00000552008 PPP2R5DQ14738 602 aa3.24□□□□□ -1.89
LIMA1-209ENST00000552008 SLC9A5Q14940 896 aa3.24□□□□□ -1.89
LIMA1-209ENST00000552008 PRKD1Q15139 912 aaPredicted RBP3.24□□□□□ -1.89
LIMA1-209ENST00000552008 ANKRD39Q53RE8 183 aa3.24□□□□□ -1.89
LIMA1-209ENST00000552008 AXDND1Q5T1B0 1012 aaPredicted RBP3.24□□□□□ -1.89
LIMA1-209ENST00000552008 POMZP3Q6PJE2 187 aa3.24□□□□□ -1.89
LIMA1-209ENST00000552008 CYP2R1Q6VVX0 501 aa3.24□□□□□ -1.89
LIMA1-209ENST00000552008 ARHGEF18Q6ZSZ5 1173 aa3.24□□□□□ -1.89
LIMA1-209ENST00000552008 SPATC1Q76KD6 591 aa3.24□□□□□ -1.89
LIMA1-209ENST00000552008 BHLHA9Q7RTU4 235 aa3.24□□□□□ -1.89
LIMA1-209ENST00000552008 CABP7Q86V35 215 aa3.24□□□□□ -1.89
LIMA1-209ENST00000552008 PPFIBP1Q86W92 1011 aa3.24□□□□□ -1.89
LIMA1-209ENST00000552008 KYQ8NBH2 561 aa3.24□□□□□ -1.89
LIMA1-209ENST00000552008 ADCY4Q8NFM4 1077 aa3.24□□□□□ -1.89
LIMA1-209ENST00000552008 NEU4Q8WWR8 484 aaPredicted RBP3.24□□□□□ -1.89
LIMA1-209ENST00000552008 KLHL6Q8WZ60 621 aa3.24□□□□□ -1.89
LIMA1-209ENST00000552008 APPBP2Q92624 585 aa3.24□□□□□ -1.89
LIMA1-209ENST00000552008 BRF1Q92994 677 aa3.24□□□□□ -1.89
LIMA1-209ENST00000552008 CDC6Q99741 560 aa3.24□□□□□ -1.89
LIMA1-209ENST00000552008 SLKQ9H2G2 1235 aaPredicted RBP3.24□□□□□ -1.89
LIMA1-209ENST00000552008 PCDH18Q9HCL0 1135 aa3.24□□□□□ -1.89
LIMA1-209ENST00000552008 WHRNQ9P202 907 aa3.24□□□□□ -1.89
LIMA1-209ENST00000552008 AKT3Q9Y243 479 aa3.24□□□□□ -1.89
LIMA1-209ENST00000552008 SF3B6Q9Y3B4 125 aaKnown RBP3.24□□□□□ -1.89
LIMA1-209ENST00000552008 MSRB2Q9Y3D2 182 aa3.24□□□□□ -1.89
LIMA1-209ENST00000552008 ZNF451Q9Y4E5 1061 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms