RNA–Protein interactions for RNA: ENST00000545889.5

CLIP1-218, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 4,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-218ENST00000545889 NAA25Q14CX7 972 aa9.44□□□□□ -0.9
CLIP1-218ENST00000545889 PPP1R21Q6ZMI0 780 aa9.44□□□□□ -0.9
CLIP1-218ENST00000545889 NLGN2Q8NFZ4 835 aa9.44□□□□□ -0.9
CLIP1-218ENST00000545889 GANCQ8TET4 914 aa9.44□□□□□ -0.9
CLIP1-218ENST00000545889 CCT6BQ92526 530 aa9.44□□□□□ -0.9
CLIP1-218ENST00000545889 TBC1D31Q96DN5 1066 aa9.44□□□□□ -0.9
CLIP1-218ENST00000545889 USP54Q70EL1 1684 aa9.43□□□□□ -0.9
CLIP1-218ENST00000545889 IL1R1P14778 569 aa9.43□□□□□ -0.9
CLIP1-218ENST00000545889 STAT2P52630 851 aa9.43□□□□□ -0.9
CLIP1-218ENST00000545889 AP1ARQ63HQ0 302 aa9.43□□□□□ -0.9
CLIP1-218ENST00000545889 TMEM47Q9BQJ4 181 aa9.43□□□□□ -0.9
CLIP1-218ENST00000545889 NOC4LQ9BVI4 516 aaKnown RBP9.43□□□□□ -0.9
CLIP1-218ENST00000545889 TMEM39BQ9GZU3 492 aa9.43□□□□□ -0.9
CLIP1-218ENST00000545889 OSBPL5Q9H0X9 879 aaPredicted RBP9.43□□□□□ -0.9
CLIP1-218ENST00000545889 BAZ2BQ9UIF8 2168 aaKnown RBP9.43□□□□□ -0.9
CLIP1-218ENST00000545889 TCRBV5S4A2TA0A5A2 114 aa9.43□□□□□ -0.9
CLIP1-218ENST00000545889 ESYT2A0FGR8 921 aa9.43□□□□□ -0.9
CLIP1-218ENST00000545889 KIF28PB7ZC32 967 aa9.43□□□□□ -0.9
CLIP1-218ENST00000545889 GNAT1P11488 350 aa9.43□□□□□ -0.9
CLIP1-218ENST00000545889 LIFRP42702 1097 aa9.43□□□□□ -0.9
CLIP1-218ENST00000545889 CLCN6P51797 869 aa9.43□□□□□ -0.9
CLIP1-218ENST00000545889 KRT83P78385 493 aa9.43□□□□□ -0.9
CLIP1-218ENST00000545889 RASGRP4Q8TDF6 673 aa9.43□□□□□ -0.9
CLIP1-218ENST00000545889 CSRNP2Q9H175 543 aa9.43□□□□□ -0.9
CLIP1-218ENST00000545889 LY9Q9HBG7 655 aa9.43□□□□□ -0.9
CLIP1-218ENST00000545889 IRAK4Q9NWZ3 460 aa9.43□□□□□ -0.9
CLIP1-218ENST00000545889 DONSONQ9NYP3 566 aa9.43□□□□□ -0.9
CLIP1-218ENST00000545889 SEPT9Q9UHD8 586 aaPredicted RBP9.43□□□□□ -0.9
CLIP1-218ENST00000545889 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.43□□□□□ -0.9
CLIP1-218ENST00000545889 EIF3CLB5ME19 914 aaKnown RBP9.43□□□□□ -0.9
CLIP1-218ENST00000545889 KRT86O43790 486 aa9.43□□□□□ -0.9
CLIP1-218ENST00000545889 ANTXR2P58335 489 aa9.43□□□□□ -0.9
CLIP1-218ENST00000545889 SPP2Q13103 211 aa9.43□□□□□ -0.9
CLIP1-218ENST00000545889 CABP7Q86V35 215 aa9.43□□□□□ -0.9
CLIP1-218ENST00000545889 FAM178BQ8IXR5 827 aa9.43□□□□□ -0.9
CLIP1-218ENST00000545889 EIF3CQ99613 913 aaKnown RBP9.43□□□□□ -0.9
CLIP1-218ENST00000545889 PIDD1Q9HB75 910 aa9.43□□□□□ -0.9
CLIP1-218ENST00000545889 SUGT1Q9Y2Z0 365 aa9.43□□□□□ -0.9
CLIP1-218ENST00000545889 SLURP2P0DP57 97 aa9.43□□□□□ -0.9
CLIP1-218ENST00000545889 CDC27P30260 824 aa9.43□□□□□ -0.9
CLIP1-218ENST00000545889 CYP4A11Q02928 519 aa9.43□□□□□ -0.9
CLIP1-218ENST00000545889 DMP1Q13316 513 aaPredicted RBP9.43□□□□□ -0.9
CLIP1-218ENST00000545889 EGFL6Q8IUX8 553 aa9.43□□□□□ -0.9
CLIP1-218ENST00000545889 CERS5Q8N5B7 392 aa9.43□□□□□ -0.9
CLIP1-218ENST00000545889 CSGALNACT2Q8N6G5 542 aa9.43□□□□□ -0.9
CLIP1-218ENST00000545889 SMC1BQ8NDV3 1235 aa9.43□□□□□ -0.9
CLIP1-218ENST00000545889 NLRP7Q8WX94 980 aa9.43□□□□□ -0.9
CLIP1-218ENST00000545889 ANKFY1Q9P2R3 1169 aa9.43□□□□□ -0.9
CLIP1-218ENST00000545889 RPAP1Q9BWH6 1393 aaPredicted RBP9.42□□□□□ -0.9
CLIP1-218ENST00000545889 A0A1B0GVL5 298 aa9.42□□□□□ -0.9
CLIP1-218ENST00000545889 ERCC5P28715 1186 aaPredicted RBP9.42□□□□□ -0.9
CLIP1-218ENST00000545889 NBPF9Q3BBW0 867 aa9.42□□□□□ -0.9
CLIP1-218ENST00000545889 VWA3BQ502W6 1294 aa9.42□□□□□ -0.9
CLIP1-218ENST00000545889 HHIPL2Q6UWX4 724 aa9.42□□□□□ -0.9
CLIP1-218ENST00000545889 SND1Q7KZF4 910 aaKnown RBP eCLIP9.42□□□□□ -0.9
CLIP1-218ENST00000545889 FBXO18Q8NFZ0 1043 aa9.42□□□□□ -0.9
CLIP1-218ENST00000545889 RTFDC1Q9BY42 306 aaPredicted RBP9.42□□□□□ -0.9
CLIP1-218ENST00000545889 ZNF70Q9UC06 446 aaPredicted RBP9.42□□□□□ -0.9
CLIP1-218ENST00000545889 AFG3L2Q9Y4W6 797 aa9.42□□□□□ -0.9
CLIP1-218ENST00000545889 DPYSL4O14531 572 aa9.42□□□□□ -0.9
CLIP1-218ENST00000545889 ANO6Q4KMQ2 910 aa9.42□□□□□ -0.9
CLIP1-218ENST00000545889 ANGEL2Q5VTE6 544 aaKnown RBP9.42□□□□□ -0.9
CLIP1-218ENST00000545889 ARMCX5Q6P1M9 558 aa9.42□□□□□ -0.9
CLIP1-218ENST00000545889 FAM160B2Q86V87 743 aa9.42□□□□□ -0.9
CLIP1-218ENST00000545889 SLFN12Q8IYM2 578 aa9.42□□□□□ -0.9
CLIP1-218ENST00000545889 PFDN4Q9NQP4 134 aa9.42□□□□□ -0.9
CLIP1-218ENST00000545889 DDAH1O94760 285 aa9.42□□□□□ -0.9
CLIP1-218ENST00000545889 BCRP11274 1271 aa9.42□□□□□ -0.9
CLIP1-218ENST00000545889 SCG2P13521 617 aa9.42□□□□□ -0.9
CLIP1-218ENST00000545889 PTPREP23469 700 aa9.42□□□□□ -0.9
CLIP1-218ENST00000545889 C9orf131Q5VYM1 1079 aa9.42□□□□□ -0.9
CLIP1-218ENST00000545889 TTC19Q6DKK2 380 aaPredicted RBP9.42□□□□□ -0.9
CLIP1-218ENST00000545889 MMS22LQ6ZRQ5 1243 aa9.42□□□□□ -0.9
CLIP1-218ENST00000545889 AOPEPQ8N6M6 819 aa9.42□□□□□ -0.9
CLIP1-218ENST00000545889 PIGSQ96S52 555 aa9.42□□□□□ -0.9
CLIP1-218ENST00000545889 FAM107BQ9H098 131 aa9.42□□□□□ -0.9
CLIP1-218ENST00000545889 KDM3AQ9Y4C1 1321 aa9.41□□□□□ -0.9
CLIP1-218ENST00000545889 USP17L5A8MUK1 530 aa9.41□□□□□ -0.9
CLIP1-218ENST00000545889 DDNO94850 711 aaPredicted RBP9.41□□□□□ -0.9
CLIP1-218ENST00000545889 ERCC3P19447 782 aa9.41□□□□□ -0.9
CLIP1-218ENST00000545889 GCKP35557 465 aa9.41□□□□□ -0.9
CLIP1-218ENST00000545889 EXOSC10Q01780 885 aaKnown RBP9.41□□□□□ -0.9
CLIP1-218ENST00000545889 EVX2Q03828 476 aa9.41□□□□□ -0.9
CLIP1-218ENST00000545889 CALCOCO2Q13137 446 aa9.41□□□□□ -0.9
CLIP1-218ENST00000545889 SEMA3FQ13275 785 aa9.41□□□□□ -0.9
CLIP1-218ENST00000545889 COL9A3Q14050 684 aaPredicted RBP9.41□□□□□ -0.9
CLIP1-218ENST00000545889 PPP1R7Q15435 360 aa9.41□□□□□ -0.9
CLIP1-218ENST00000545889 FASTKD5Q7L8L6 764 aaKnown RBP9.41□□□□□ -0.9
CLIP1-218ENST00000545889 TTC30AQ86WT1 665 aa9.41□□□□□ -0.9
CLIP1-218ENST00000545889 PRPF31Q8WWY3 499 aaKnown RBP9.41□□□□□ -0.9
CLIP1-218ENST00000545889 USP28Q96RU2 1077 aa9.41□□□□□ -0.9
CLIP1-218ENST00000545889 MYOZ2Q9NPC6 264 aa9.41□□□□□ -0.9
CLIP1-218ENST00000545889 USTQ9Y2C2 406 aa9.41□□□□□ -0.9
CLIP1-218ENST00000545889 COL22A1Q8NFW1 1626 aaPredicted RBP9.41□□□□□ -0.9
CLIP1-218ENST00000545889 ITGB4P16144 1822 aa9.41□□□□□ -0.9
CLIP1-218ENST00000545889 CRCPO75575 148 aa9.41□□□□□ -0.9
CLIP1-218ENST00000545889 ATXN8OSP0DMR3 200 aa9.41□□□□□ -0.9
CLIP1-218ENST00000545889 POLR2BP30876 1174 aaKnown RBP9.41□□□□□ -0.9
CLIP1-218ENST00000545889 CYP2J2P51589 502 aa9.41□□□□□ -0.9
CLIP1-218ENST00000545889 NR5A1Q13285 461 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms