RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 GOLGA6L1Q8N7Z2 621 aa17.5■□□□□ 0.39
LDLR-204ENST00000545707 GGA1Q9UJY5 639 aa17.5■□□□□ 0.39
LDLR-204ENST00000545707 E9PMD0 336 aa17.49■□□□□ 0.39
LDLR-204ENST00000545707 COASYQ13057 564 aa17.49■□□□□ 0.39
LDLR-204ENST00000545707 HGSNATQ68CP4 663 aa17.49■□□□□ 0.39
LDLR-204ENST00000545707 DNAJC19Q96DA6 116 aa17.49■□□□□ 0.39
LDLR-204ENST00000545707 NGLY1Q96IV0 654 aa17.49■□□□□ 0.39
LDLR-204ENST00000545707 DDX25Q9UHL0 483 aaKnown RBP17.49■□□□□ 0.39
LDLR-204ENST00000545707 SBF2Q86WG5 1849 aa17.49■□□□□ 0.39
LDLR-204ENST00000545707 C6orf229H3BNL8 230 aa17.49■□□□□ 0.39
LDLR-204ENST00000545707 RIMBP2O15034 1052 aa17.49■□□□□ 0.39
LDLR-204ENST00000545707 RAD21O60216 631 aa17.49■□□□□ 0.39
LDLR-204ENST00000545707 TLR2O60603 784 aa17.49■□□□□ 0.39
LDLR-204ENST00000545707 GTF2IP78347 998 aa17.49■□□□□ 0.39
LDLR-204ENST00000545707 LRRC63Q05C16 580 aa17.49■□□□□ 0.39
LDLR-204ENST00000545707 EHHADHQ08426 723 aa17.49■□□□□ 0.39
LDLR-204ENST00000545707 PDIA5Q14554 519 aa17.49■□□□□ 0.39
LDLR-204ENST00000545707 CCDC40Q4G0X9 1142 aa17.49■□□□□ 0.39
LDLR-204ENST00000545707 KCTD1Q719H9 257 aa17.49■□□□□ 0.39
LDLR-204ENST00000545707 MYOCDQ8IZQ8 938 aa17.49■□□□□ 0.39
LDLR-204ENST00000545707 MMGT1Q8N4V1 131 aa17.49■□□□□ 0.39
LDLR-204ENST00000545707 AENQ8WTP8 325 aaKnown RBP17.49■□□□□ 0.39
LDLR-204ENST00000545707 TLR10Q9BXR5 811 aa17.49■□□□□ 0.39
LDLR-204ENST00000545707 RABEP2Q9H5N1 569 aa17.49■□□□□ 0.39
LDLR-204ENST00000545707 DDX4Q9NQI0 724 aaKnown RBP17.49■□□□□ 0.39
LDLR-204ENST00000545707 DAGLAQ9Y4D2 1042 aa17.49■□□□□ 0.39
LDLR-204ENST00000545707 MYH10P35580 1976 aa17.48■□□□□ 0.39
LDLR-204ENST00000545707 LCA5LO95447 670 aa17.48■□□□□ 0.39
LDLR-204ENST00000545707 IL1R1P14778 569 aa17.48■□□□□ 0.39
LDLR-204ENST00000545707 SMARCA1P28370 1054 aa17.48■□□□□ 0.39
LDLR-204ENST00000545707 ASTE1Q2TB18 679 aaPredicted RBP17.48■□□□□ 0.39
LDLR-204ENST00000545707 TMEM119Q4V9L6 283 aa17.48■□□□□ 0.39
LDLR-204ENST00000545707 CCDC181Q5TID7 509 aa17.48■□□□□ 0.39
LDLR-204ENST00000545707 MXD3Q9BW11 206 aa17.48■□□□□ 0.39
LDLR-204ENST00000545707 RAB34Q9BZG1 259 aa17.48■□□□□ 0.39
LDLR-204ENST00000545707 FAM184BQ9ULE4 1060 aa17.48■□□□□ 0.39
LDLR-204ENST00000545707 GOLGA6BA6NDN3 693 aa17.48■□□□□ 0.39
LDLR-204ENST00000545707 NOL4O94818 638 aa17.48■□□□□ 0.39
LDLR-204ENST00000545707 PLCG2P16885 1265 aa17.48■□□□□ 0.39
LDLR-204ENST00000545707 POLR2FP61218 127 aaKnown RBP17.48■□□□□ 0.39
LDLR-204ENST00000545707 IQCEQ6IPM2 695 aa17.48■□□□□ 0.39
LDLR-204ENST00000545707 ALS2CR12Q96Q35 445 aa17.48■□□□□ 0.39
LDLR-204ENST00000545707 TSG101Q99816 390 aa17.48■□□□□ 0.39
LDLR-204ENST00000545707 RBM12Q9NTZ6 932 aaKnown RBP17.48■□□□□ 0.39
LDLR-204ENST00000545707 PANK4Q9NVE7 773 aa17.48■□□□□ 0.39
LDLR-204ENST00000545707 HYOU1Q9Y4L1 999 aa17.48■□□□□ 0.39
LDLR-204ENST00000545707 USP17L10C9JJH3 530 aa17.47■□□□□ 0.39
LDLR-204ENST00000545707 FGFR1OPO95684 399 aaKnown RBP17.47■□□□□ 0.39
LDLR-204ENST00000545707 NOVP48745 357 aa17.47■□□□□ 0.39
LDLR-204ENST00000545707 RNASE9P60153 205 aaKnown RBP17.47■□□□□ 0.39
LDLR-204ENST00000545707 KLHDC7AQ5VTJ3 777 aa17.47■□□□□ 0.39
LDLR-204ENST00000545707 LSM14BQ9BX40 385 aaKnown RBP17.47■□□□□ 0.39
LDLR-204ENST00000545707 COL4A3BPQ9Y5P4 624 aa17.47■□□□□ 0.39
LDLR-204ENST00000545707 EP400Q96L91 3159 aa17.47■□□□□ 0.39
LDLR-204ENST00000545707 USP17L15C9J2P7 530 aa17.47■□□□□ 0.39
LDLR-204ENST00000545707 USP17L13C9JLJ4 530 aa17.47■□□□□ 0.39
LDLR-204ENST00000545707 USP17L11C9JVI0 530 aa17.47■□□□□ 0.39
LDLR-204ENST00000545707 USP17L18D6R9N7 530 aa17.47■□□□□ 0.39
LDLR-204ENST00000545707 USP17L22D6RA61 530 aa17.47■□□□□ 0.39
LDLR-204ENST00000545707 USP17L17D6RBQ6 530 aa17.47■□□□□ 0.39
LDLR-204ENST00000545707 USP17L19D6RCP7 530 aa17.47■□□□□ 0.39
LDLR-204ENST00000545707 USP17L20D6RJB6 530 aa17.47■□□□□ 0.39
LDLR-204ENST00000545707 IVLP07476 585 aa17.47■□□□□ 0.39
LDLR-204ENST00000545707 USP17L24Q0WX57 530 aa17.47■□□□□ 0.39
LDLR-204ENST00000545707 FAM83BQ5T0W9 1011 aa17.47■□□□□ 0.39
LDLR-204ENST00000545707 HAUS3Q68CZ6 603 aa17.47■□□□□ 0.39
LDLR-204ENST00000545707 CCDC70Q6NSX1 233 aa17.47■□□□□ 0.39
LDLR-204ENST00000545707 USP17L6PQ6QN14 398 aa17.47■□□□□ 0.39
LDLR-204ENST00000545707 EHD4Q9H223 541 aa17.47■□□□□ 0.39
LDLR-204ENST00000545707 ZHX3Q9H4I2 956 aa17.47■□□□□ 0.39
LDLR-204ENST00000545707 PCDHA12Q9UN75 941 aa17.47■□□□□ 0.39
LDLR-204ENST00000545707 PACSIN2Q9UNF0 486 aaPredicted RBP17.47■□□□□ 0.39
LDLR-204ENST00000545707 KIAA1024Q9UPX6 916 aa17.47■□□□□ 0.39
LDLR-204ENST00000545707 ZSCAN5CA6NGD5 496 aaPredicted RBP17.46■□□□□ 0.39
LDLR-204ENST00000545707 FTCDO95954 541 aa17.46■□□□□ 0.39
LDLR-204ENST00000545707 FKBP3Q00688 224 aaKnown RBP17.46■□□□□ 0.39
LDLR-204ENST00000545707 KCTD19Q17RG1 926 aaPredicted RBP17.46■□□□□ 0.39
LDLR-204ENST00000545707 ZCWPW2Q504Y3 356 aa17.46■□□□□ 0.39
LDLR-204ENST00000545707 ASPRV1Q53RT3 343 aa17.46■□□□□ 0.39
LDLR-204ENST00000545707 FAM26FQ5R3K3 315 aa17.46■□□□□ 0.39
LDLR-204ENST00000545707 C15orf52Q6ZUT6 534 aaKnown RBP17.46■□□□□ 0.39
LDLR-204ENST00000545707 DNAAF5Q86Y56 855 aa17.46■□□□□ 0.39
LDLR-204ENST00000545707 TSEN2Q8NCE0 465 aaKnown RBP17.46■□□□□ 0.39
LDLR-204ENST00000545707 TBC1D16Q8TBP0 767 aa17.46■□□□□ 0.39
LDLR-204ENST00000545707 RIC8AQ9NPQ8 531 aa17.46■□□□□ 0.39
LDLR-204ENST00000545707 COL24A1Q17RW2 1714 aa17.46■□□□□ 0.39
LDLR-204ENST00000545707 PNMA6FA0A0J9YX94 578 aa17.46■□□□□ 0.38
LDLR-204ENST00000545707 POTEB3A0JP26 581 aa17.46■□□□□ 0.38
LDLR-204ENST00000545707 POTECB2RU33 542 aa17.46■□□□□ 0.38
LDLR-204ENST00000545707 MPHOSPH10O00566 681 aaKnown RBP17.46■□□□□ 0.38
LDLR-204ENST00000545707 RPS6KA5O75582 802 aa17.46■□□□□ 0.38
LDLR-204ENST00000545707 TCP1P17987 556 aaKnown RBP17.46■□□□□ 0.38
LDLR-204ENST00000545707 ATP2B4P23634 1241 aa17.46■□□□□ 0.38
LDLR-204ENST00000545707 STAT3P40763 770 aa17.46■□□□□ 0.38
LDLR-204ENST00000545707 ZNF543Q08ER8 600 aa17.46■□□□□ 0.38
LDLR-204ENST00000545707 ORC2Q13416 577 aaPredicted RBP17.46■□□□□ 0.38
LDLR-204ENST00000545707 TTC19Q6DKK2 380 aaPredicted RBP17.46■□□□□ 0.38
LDLR-204ENST00000545707 POTEBQ6S5H4 581 aa17.46■□□□□ 0.38
LDLR-204ENST00000545707 ESYT3A0FGR9 886 aa17.45■□□□□ 0.38
LDLR-204ENST00000545707 SNHG28P0DPA3 235 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms